Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47095 * 2 1 4 4 C 1.52995 * 109.46826 * 120.00871 * 2 1 3 5 5 C 1.53005 * 109.46961 * 185.00048 * 4 2 1 6 6 N 1.46495 * 109.47292 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00534 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99314 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00346 * 180.02562 * 7 6 5 10 10 H 1.09002 * 115.55180 * 325.58428 * 9 7 6 11 11 C 1.53001 * 117.51704 * 111.28562 * 9 7 6 12 12 C 1.52991 * 117.49917 * 179.91285 * 9 7 6 13 13 C 1.53001 * 138.58964 * 121.58989 * 12 9 7 14 14 C 1.53000 * 60.00037 * 229.11382 * 13 12 9 15 15 N 1.46508 * 109.46945 * 240.00692 * 2 1 3 16 16 C 1.34768 * 120.00194 * 84.99969 * 15 2 1 17 17 O 1.21280 * 119.99939 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99998 * 179.97438 * 16 15 2 19 19 S 1.81000 * 109.47216 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99903 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00430 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99692 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47336 * 60.00360 * 24 22 20 26 26 H 1.48505 * 109.47014 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47481 * 299.99702 * 24 22 20 28 28 H 1.08990 * 109.47512 * 299.99508 * 1 2 3 29 29 H 1.09003 * 109.46834 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47682 * 65.00237 * 4 2 1 32 32 H 1.09007 * 109.47046 * 304.99507 * 4 2 1 33 33 H 1.09000 * 109.47176 * 59.99950 * 5 4 2 34 34 H 1.08994 * 109.46762 * 299.99947 * 5 4 2 35 35 H 0.97006 * 119.99979 * 0.02562 * 6 5 4 36 36 H 1.09004 * 117.49834 * 214.96873 * 11 9 7 37 37 H 1.09005 * 117.50045 * 359.97438 * 11 9 7 38 38 H 1.08998 * 117.49651 * 336.60366 * 13 12 9 39 39 H 1.08996 * 117.49630 * 121.62132 * 13 12 9 40 40 H 1.08998 * 117.49727 * 252.51693 * 14 13 12 41 41 H 1.08999 * 117.51847 * 107.48309 * 14 13 12 42 42 H 0.97000 * 119.99189 * 264.99771 * 15 2 1 43 43 H 1.08999 * 109.47365 * 300.00257 * 18 16 15 44 44 H 1.08998 * 109.47083 * 60.00414 * 18 16 15 45 45 H 0.96997 * 119.99492 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3136 6 7 4.0531 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7753 8 8 6.1584 -0.8006 2.0237 9 6 5.8763 -2.0505 4.0056 10 1 5.2255 -1.9964 4.8784 11 6 6.6780 -3.3374 3.8009 12 6 7.3865 -2.0579 4.2500 13 6 8.3767 -1.6125 5.3279 14 6 8.6152 -1.2312 3.8655 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8591 1.1588 -2.4114 18 6 2.6499 -0.7283 -3.5876 19 16 2.7113 0.4350 -4.9729 20 6 3.3143 -0.6302 -6.2403 21 1 3.5237 -1.6666 -6.0204 22 6 3.5202 -0.1372 -7.5215 23 7 3.2645 1.1259 -7.7896 24 14 4.1601 -1.2663 -8.8649 25 1 3.2094 -2.3901 -9.0615 26 1 4.2920 -0.5029 -10.1319 27 1 5.4869 -1.8036 -8.4698 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7717 1.2054 32 1 1.6053 -0.2619 2.1369 33 1 3.8532 0.4368 1.3574 34 1 3.9994 -1.0729 0.4259 35 1 3.4257 -1.7354 3.1109 36 1 6.5547 -4.1300 4.5390 37 1 6.8420 -3.6707 2.7761 38 1 8.0583 -0.8227 6.0084 39 1 9.0248 -2.3740 5.7616 40 1 9.4201 -1.7420 3.3371 41 1 8.4536 -0.1908 3.5835 42 1 2.2490 -1.6317 -1.1527 43 1 3.6492 -1.1201 -3.3980 44 1 1.9776 -1.5505 -3.8327 45 1 3.4088 1.4704 -8.6847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078729633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = -54.199220 kcal Electronic energy + Delta-G solvation = -24199.691777 eV Core-core repulsion = 20536.836659 eV Total energy + Delta-G solvation = -3662.855118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12992 -40.73155 -38.62493 -37.56598 -35.59942 -34.60068 -33.65841 -32.97572 -30.51384 -29.70918 -27.67309 -25.83736 -23.72343 -23.30363 -22.56216 -21.69848 -21.42125 -20.14606 -19.82354 -18.17742 -17.94486 -17.34476 -16.95615 -16.89024 -16.53624 -16.38132 -15.97290 -15.89934 -15.57955 -15.31005 -14.91272 -14.78619 -14.45683 -14.38240 -13.99388 -13.52797 -13.32577 -13.18954 -13.03498 -12.88010 -12.70704 -12.62228 -12.44907 -12.42908 -12.37723 -11.92666 -11.74950 -11.21230 -11.14462 -11.11349 -10.96028 -10.92585 -10.77668 -10.30124 -10.21143 -10.06397 -8.68437 -8.35995 -6.14306 1.25590 1.42505 1.44131 1.45407 1.55518 1.62035 2.01087 2.25292 2.30647 2.72805 2.84580 2.97778 3.30828 3.32078 3.70381 3.74643 3.83228 3.91382 4.01290 4.05715 4.11738 4.27140 4.41943 4.45330 4.48264 4.49812 4.58894 4.65039 4.73251 4.75834 4.81050 4.81659 4.88344 4.99653 5.00853 5.05105 5.13681 5.24478 5.33180 5.39655 5.39821 5.55449 6.17956 6.50894 6.55475 7.04828 7.25855 7.26306 8.73054 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002255 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.161856 B =12411.738588 C =14118.543215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.118 3.882 6 N -0.709 5.709 7 C 0.528 3.472 8 O -0.586 6.586 9 C -0.139 4.139 10 H 0.158 0.842 11 C -0.086 4.086 12 C -0.232 4.232 13 C -0.103 4.103 14 C -0.142 4.142 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.264 1.264 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.421 0.579 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.414 0.586 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -13.777 31.823 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.361 5.361 7 C 0.315 3.685 8 O -0.466 6.466 9 C -0.160 4.160 10 H 0.176 0.824 11 C -0.123 4.123 12 C -0.232 4.232 13 C -0.139 4.139 14 C -0.179 4.179 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.259 0.741 36 H 0.157 0.843 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.707 -11.300 31.101 33.098 hybrid contribution 0.566 -1.665 -1.181 2.118 sum 1.273 -12.966 29.920 32.633 Atomic orbital electron populations 1.22115 0.93756 1.03297 1.02304 1.20995 0.95060 0.96766 0.83554 0.91964 1.21992 0.92150 1.03657 0.97598 1.21279 0.95409 0.96405 0.87524 1.45751 1.07050 1.56455 1.26891 1.20382 0.82409 0.79313 0.86354 1.90736 1.56946 1.47511 1.51380 1.22059 0.93735 1.02620 0.97590 0.82427 1.22768 0.97249 0.89405 1.02925 1.21463 0.90294 1.02879 1.08580 1.22834 0.97923 1.02516 0.90632 1.22575 0.96943 0.99209 0.99136 1.45911 1.67515 1.14511 1.08488 1.20009 0.76651 0.86579 0.84745 1.90686 1.50726 1.17703 1.85197 1.23386 1.05251 1.03290 0.96301 1.85556 1.86669 1.17439 1.02807 1.23171 1.51121 0.98430 0.96837 0.89997 1.26158 0.95062 0.97269 1.00787 1.70180 1.46729 1.15485 1.22330 0.84993 0.79034 0.77763 0.76136 1.18466 1.20282 1.18825 0.89287 0.95148 0.90371 0.87486 0.86739 0.93843 0.93116 0.74102 0.84336 0.89475 0.87652 0.86363 0.88575 0.90489 0.74869 0.87835 0.87104 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.14 2.79 2.58 44.99 0.12 2.91 16 3 H 0.06 1.64 7.58 -2.39 -0.02 1.63 16 4 C -0.12 -1.21 4.87 30.59 0.15 -1.06 16 5 C 0.12 2.09 5.56 86.38 0.48 2.57 16 6 N -0.71 -9.60 5.56 -463.07 -2.57 -12.17 16 7 C 0.53 10.80 7.61 87.66 0.67 11.47 16 8 O -0.59 -18.82 16.24 -3.04 -0.05 -18.87 16 9 C -0.14 -1.82 6.19 -11.54 -0.07 -1.89 16 10 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 11 C -0.09 -0.99 10.24 30.59 0.31 -0.68 16 12 C -0.23 -3.62 5.05 -52.19 -0.26 -3.89 16 13 C -0.10 -1.19 10.53 30.59 0.32 -0.87 16 14 C -0.14 -2.62 10.16 30.59 0.31 -2.31 16 15 N -0.71 -17.33 4.53 -442.54 -2.00 -19.34 16 16 C 0.53 20.05 7.81 87.66 0.68 20.73 16 17 O -0.56 -26.65 15.52 -3.03 -0.05 -26.70 16 18 C -0.13 -5.36 6.16 71.24 0.44 -4.93 16 19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -32.06 9.50 67.96 0.65 -31.42 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.08 13.22 21.65 0.29 -56.80 16 24 Si 1.00 44.51 29.55 68.60 2.03 46.54 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.13 7.75 -2.39 -0.02 1.12 16 35 H 0.42 2.05 8.47 -92.70 -0.79 1.27 16 36 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.41 7.30 8.60 -92.71 -0.80 6.51 16 43 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -89.21 398.40 0.84 -88.37 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.58 Total: 19.08 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.94 Total: -10.28 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -4.29 Total: -88.30 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.10 Total: -45.57 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -89.21 0.84 -88.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078729633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.171 kcal (2) G-P(sol) polarization free energy of solvation -89.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds