Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.91791 * 2 1 4 4 C 1.54916 * 111.00097 * 236.10397 * 2 1 3 5 5 N 1.47425 * 104.82925 * 204.91608 * 4 2 1 6 6 C 1.36938 * 125.64396 * 204.16470 * 5 4 2 7 7 H 1.07994 * 120.00714 * 354.83108 * 6 5 4 8 8 C 1.38817 * 119.99760 * 174.83686 * 6 5 4 9 9 N 1.31621 * 120.00093 * 7.06129 * 8 6 5 10 10 Si 1.86802 * 120.00053 * 187.05912 * 8 6 5 11 11 H 1.48501 * 109.46907 * 94.98523 * 10 8 6 12 12 H 1.48496 * 109.47377 * 214.98668 * 10 8 6 13 13 H 1.48501 * 109.47212 * 334.98993 * 10 8 6 14 14 C 1.47022 * 108.70707 * 24.12744 * 5 4 2 15 15 C 1.54328 * 107.26739 * 358.93998 * 14 5 4 16 16 H 1.09003 * 110.71839 * 96.16964 * 15 14 5 17 17 N 1.46494 * 110.71857 * 219.26461 * 15 14 5 18 18 C 1.34778 * 120.00383 * 271.16024 * 17 15 14 19 19 O 1.21490 * 119.99529 * 359.97438 * 18 17 15 20 20 C 1.48347 * 120.00317 * 179.97438 * 18 17 15 21 21 C 1.40170 * 119.20591 * 179.72970 * 20 18 17 22 22 C 1.36625 * 119.70964 * 179.71957 * 21 20 18 23 23 C 1.40599 * 118.20604 * 0.53649 * 22 21 20 24 24 C 1.40735 * 121.37390 * 179.72599 * 23 22 21 25 25 C 1.36583 * 118.12948 * 179.97438 * 24 23 22 26 26 C 1.39427 * 119.85210 * 0.02562 * 25 24 23 27 27 N 1.31022 * 121.83400 * 0.02562 * 26 25 24 28 28 C 1.33856 * 121.42760 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.20271 * 359.97438 * 20 18 17 30 30 H 1.09005 * 109.46766 * 296.09740 * 1 2 3 31 31 H 1.08995 * 109.47196 * 56.09190 * 1 2 3 32 32 H 1.08998 * 109.47513 * 176.09814 * 1 2 3 33 33 H 1.08996 * 110.36701 * 86.07726 * 4 2 1 34 34 H 1.09001 * 110.46014 * 323.80132 * 4 2 1 35 35 H 0.96998 * 120.00290 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.88197 * 239.52607 * 14 5 4 37 37 H 1.08997 * 110.01106 * 118.42458 * 14 5 4 38 38 H 0.97008 * 120.00158 * 91.15854 * 17 15 14 39 39 H 1.08001 * 120.14654 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.89505 * 180.28922 * 22 21 20 41 41 H 1.08002 * 120.92991 * 359.96489 * 24 23 22 42 42 H 1.07999 * 120.07044 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.08692 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4270 -1.2430 -0.7735 6 6 4.4643 -1.5653 -1.6075 7 1 4.3103 -1.5904 -2.6761 8 6 5.7138 -1.8598 -1.0792 9 7 5.8692 -1.9659 0.2235 10 14 7.1747 -2.1055 -2.2172 11 1 7.9220 -0.8287 -2.3459 12 1 8.0699 -3.1486 -1.6554 13 1 6.6934 -2.5343 -3.5550 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4468 -1.6633 1.4207 17 7 2.2285 0.0459 2.3839 18 6 2.2520 -0.5043 3.6140 19 8 2.1546 -1.7084 3.7428 20 6 2.3967 0.3604 4.8107 21 6 2.4133 -0.2290 6.0824 22 6 2.5519 0.5571 7.1912 23 6 2.6625 1.9471 7.0108 24 6 2.8020 2.8193 8.1065 25 6 2.9045 4.1579 7.8549 26 6 2.8687 4.6218 6.5406 27 7 2.7376 3.8066 5.5233 28 6 2.6320 2.4837 5.6981 29 7 2.5016 1.6655 4.6527 30 1 -0.3633 0.4521 0.9230 31 1 -0.3633 0.5733 -0.8528 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1559 -0.1719 -2.0837 34 1 1.4523 -1.6703 -1.4045 35 1 6.7424 -2.1713 0.5926 36 1 4.2426 -0.5998 1.0597 37 1 3.6661 -2.2885 1.0420 38 1 2.3059 1.0074 2.2811 39 1 2.3220 -1.3002 6.1850 40 1 2.5718 0.1229 8.1799 41 1 2.8271 2.4408 9.1177 42 1 3.0131 4.8553 8.6723 43 1 2.9503 5.6828 6.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079731921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = 67.752791 kcal Electronic energy + Delta-G solvation = -26876.768786 eV Core-core repulsion = 23116.050704 eV Total energy + Delta-G solvation = -3760.718082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48156 -39.64929 -38.02758 -37.15675 -34.49787 -33.83349 -32.60848 -31.36270 -31.14660 -30.32462 -27.91450 -25.88478 -25.47914 -24.52641 -23.48238 -22.87312 -21.22206 -20.05279 -19.77623 -18.94030 -18.02510 -17.44457 -16.83276 -16.23958 -15.87076 -15.45146 -15.15823 -14.84520 -14.48935 -14.30441 -14.26333 -13.80301 -13.62611 -13.43518 -13.07771 -12.73185 -12.64432 -12.39655 -12.17622 -11.91334 -11.64719 -11.39412 -11.28982 -10.96877 -10.92464 -10.74729 -10.59341 -10.35481 -9.96945 -9.91540 -9.84042 -9.64027 -9.25832 -9.23340 -9.18137 -8.56655 -8.43713 -6.77936 -5.65454 -2.99267 -0.19561 0.23468 1.58679 2.21809 3.14061 3.24373 3.44571 3.49058 3.51783 3.53195 3.94639 4.08442 4.29274 4.34982 4.44384 4.54403 4.64405 4.78249 4.99730 5.04609 5.13948 5.35129 5.36161 5.50693 5.54500 5.55976 5.60685 5.80494 5.83152 5.88375 6.03488 6.05688 6.21425 6.22521 6.28783 6.40358 6.54401 6.68538 6.77654 6.97578 7.05024 7.56784 7.65087 7.79216 7.89440 7.95440 8.30343 8.47031 9.26177 9.87392 10.52891 11.45688 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.003051 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.919195 B = 9176.098935 C = 9767.243612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.117 3.883 16 H 0.090 0.910 17 N -0.685 5.685 18 C 0.564 3.436 19 O -0.525 6.525 20 C 0.157 3.843 21 C -0.127 4.127 22 C -0.049 4.049 23 C -0.145 4.145 24 C -0.045 4.045 25 C -0.177 4.177 26 C 0.157 3.843 27 N -0.457 5.457 28 C 0.302 3.698 29 N -0.435 5.435 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.022 0.978 35 H 0.252 0.748 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.409 0.591 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 11.727 18.210 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.098 0.902 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.013 3.987 16 H 0.108 0.892 17 N -0.334 5.334 18 C 0.347 3.653 19 O -0.400 6.400 20 C -0.001 4.001 21 C -0.148 4.148 22 C -0.076 4.076 23 C -0.150 4.150 24 C -0.072 4.072 25 C -0.197 4.197 26 C -0.021 4.021 27 N -0.166 5.166 28 C 0.064 3.936 29 N -0.148 5.148 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.245 0.755 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.932 11.420 16.513 22.399 hybrid contribution 1.067 -0.235 1.196 1.620 sum -8.864 11.185 17.709 22.744 Atomic orbital electron populations 1.21700 0.94998 1.01733 1.01077 1.22620 0.94877 0.99711 0.96136 0.90218 1.21595 0.87583 0.94976 0.94359 1.44403 1.08119 1.79002 1.01710 1.19050 0.87374 1.40298 0.89111 0.90275 1.24850 0.97631 1.01903 0.95988 1.69989 1.22477 1.54365 1.09534 0.86123 0.82840 0.77338 0.79623 1.21675 1.21810 1.20621 1.21485 0.89975 1.00377 0.83499 1.22603 1.00581 0.92815 0.82733 0.89158 1.45823 1.70919 1.11593 1.05070 1.17766 0.78005 0.86831 0.82706 1.90802 1.49951 1.13432 1.85849 1.21664 0.94534 0.89278 0.94593 1.21904 0.98471 1.02994 0.91409 1.21456 0.94802 0.91416 0.99924 1.19734 1.03816 0.95739 0.95758 1.21490 0.94068 0.93182 0.98481 1.22041 1.02186 0.96549 0.98888 1.23144 0.91312 0.99982 0.87642 1.67645 1.11964 1.02040 1.34954 1.19224 0.96882 0.90676 0.86851 1.67421 1.10679 1.03415 1.33285 0.93086 0.92713 0.92583 0.93873 0.96006 0.93774 0.92925 0.93461 0.75521 0.82401 0.83280 0.83865 0.83860 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.31 37.16 0.35 -1.59 16 2 C -0.11 -2.01 3.26 -88.47 -0.29 -2.30 16 3 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 4 C 0.14 2.96 6.70 -2.53 -0.02 2.94 16 5 N -0.61 -15.93 3.39 -170.07 -0.58 -16.51 16 6 C -0.23 -6.58 10.27 -15.06 -0.15 -6.74 16 7 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 9 N -0.92 -28.02 10.36 55.49 0.57 -27.44 16 10 Si 0.91 22.70 29.56 -169.99 -5.02 17.68 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.17 4.42 5.13 -3.06 -0.02 4.40 16 15 C 0.12 2.35 2.74 -66.10 -0.18 2.17 16 16 H 0.09 1.86 7.52 -51.93 -0.39 1.47 16 17 N -0.68 -12.44 5.11 -52.82 -0.27 -12.71 16 18 C 0.56 10.31 7.81 -12.10 -0.09 10.22 16 19 O -0.53 -10.89 15.96 5.37 0.09 -10.80 16 20 C 0.16 2.44 6.75 -82.96 -0.56 1.88 16 21 C -0.13 -1.57 9.54 -39.44 -0.38 -1.94 16 22 C -0.05 -0.47 9.89 -39.27 -0.39 -0.86 16 23 C -0.15 -1.56 5.75 -106.68 -0.61 -2.18 16 24 C -0.05 -0.32 9.90 -39.24 -0.39 -0.71 16 25 C -0.18 -1.10 10.04 -39.74 -0.40 -1.50 16 26 C 0.16 1.33 11.14 -17.45 -0.19 1.13 16 27 N -0.46 -6.05 10.43 -12.59 -0.13 -6.18 16 28 C 0.30 4.27 7.62 -157.91 -1.20 3.07 16 29 N -0.44 -6.93 9.56 -9.19 -0.09 -7.02 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.05 1.50 7.18 -51.93 -0.37 1.13 16 37 H 0.05 1.38 7.61 -51.93 -0.40 0.99 16 38 H 0.41 6.95 7.85 -40.82 -0.32 6.63 16 39 H 0.16 1.79 7.60 -52.49 -0.40 1.39 16 40 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -35.98 361.66 -10.24 -46.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.63 Total: 3.62 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -4.62 Total: 7.69 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.49 Total: -69.85 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.98 -10.24 -46.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079731921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.973 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds