Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.91791 * 2 1 4 4 C 1.54916 * 111.00097 * 236.10397 * 2 1 3 5 5 N 1.47425 * 104.82925 * 204.91608 * 4 2 1 6 6 C 1.36938 * 125.64396 * 204.16470 * 5 4 2 7 7 H 1.07994 * 120.00714 * 354.83108 * 6 5 4 8 8 C 1.38817 * 119.99760 * 174.83686 * 6 5 4 9 9 N 1.31621 * 120.00093 * 7.06129 * 8 6 5 10 10 Si 1.86802 * 120.00053 * 187.05912 * 8 6 5 11 11 H 1.48501 * 109.46907 * 94.98523 * 10 8 6 12 12 H 1.48496 * 109.47377 * 214.98668 * 10 8 6 13 13 H 1.48501 * 109.47212 * 334.98993 * 10 8 6 14 14 C 1.47022 * 108.70707 * 24.12744 * 5 4 2 15 15 C 1.54328 * 107.26739 * 358.93998 * 14 5 4 16 16 H 1.09003 * 110.71839 * 96.16964 * 15 14 5 17 17 N 1.46494 * 110.71857 * 219.26461 * 15 14 5 18 18 C 1.34778 * 120.00383 * 271.16024 * 17 15 14 19 19 O 1.21490 * 119.99529 * 359.97438 * 18 17 15 20 20 C 1.48347 * 120.00317 * 179.97438 * 18 17 15 21 21 C 1.40170 * 119.20591 * 179.72970 * 20 18 17 22 22 C 1.36625 * 119.70964 * 179.71957 * 21 20 18 23 23 C 1.40599 * 118.20604 * 0.53649 * 22 21 20 24 24 C 1.40735 * 121.37390 * 179.72599 * 23 22 21 25 25 C 1.36583 * 118.12948 * 179.97438 * 24 23 22 26 26 C 1.39427 * 119.85210 * 0.02562 * 25 24 23 27 27 N 1.31022 * 121.83400 * 0.02562 * 26 25 24 28 28 C 1.33856 * 121.42760 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.20271 * 359.97438 * 20 18 17 30 30 H 1.09005 * 109.46766 * 296.09740 * 1 2 3 31 31 H 1.08995 * 109.47196 * 56.09190 * 1 2 3 32 32 H 1.08998 * 109.47513 * 176.09814 * 1 2 3 33 33 H 1.08996 * 110.36701 * 86.07726 * 4 2 1 34 34 H 1.09001 * 110.46014 * 323.80132 * 4 2 1 35 35 H 0.96998 * 120.00290 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.88197 * 239.52607 * 14 5 4 37 37 H 1.08997 * 110.01106 * 118.42458 * 14 5 4 38 38 H 0.97008 * 120.00158 * 91.15854 * 17 15 14 39 39 H 1.08001 * 120.14654 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.89505 * 180.28922 * 22 21 20 41 41 H 1.08002 * 120.92991 * 359.96489 * 24 23 22 42 42 H 1.07999 * 120.07044 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.08692 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4270 -1.2430 -0.7735 6 6 4.4643 -1.5653 -1.6075 7 1 4.3103 -1.5904 -2.6761 8 6 5.7138 -1.8598 -1.0792 9 7 5.8692 -1.9659 0.2235 10 14 7.1747 -2.1055 -2.2172 11 1 7.9220 -0.8287 -2.3459 12 1 8.0699 -3.1486 -1.6554 13 1 6.6934 -2.5343 -3.5550 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4468 -1.6633 1.4207 17 7 2.2285 0.0459 2.3839 18 6 2.2520 -0.5043 3.6140 19 8 2.1546 -1.7084 3.7428 20 6 2.3967 0.3604 4.8107 21 6 2.4133 -0.2290 6.0824 22 6 2.5519 0.5571 7.1912 23 6 2.6625 1.9471 7.0108 24 6 2.8020 2.8193 8.1065 25 6 2.9045 4.1579 7.8549 26 6 2.8687 4.6218 6.5406 27 7 2.7376 3.8066 5.5233 28 6 2.6320 2.4837 5.6981 29 7 2.5016 1.6655 4.6527 30 1 -0.3633 0.4521 0.9230 31 1 -0.3633 0.5733 -0.8528 32 1 -0.3634 -1.0252 -0.0699 33 1 2.1559 -0.1719 -2.0837 34 1 1.4523 -1.6703 -1.4045 35 1 6.7424 -2.1713 0.5926 36 1 4.2426 -0.5998 1.0597 37 1 3.6661 -2.2885 1.0420 38 1 2.3059 1.0074 2.2811 39 1 2.3220 -1.3002 6.1850 40 1 2.5718 0.1229 8.1799 41 1 2.8271 2.4408 9.1177 42 1 3.0131 4.8553 8.6723 43 1 2.9503 5.6828 6.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079731921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = 41.959517 kcal Electronic energy + Delta-G solvation = -26877.887266 eV Core-core repulsion = 23116.050704 eV Total energy + Delta-G solvation = -3761.836562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34857 -41.02972 -39.40325 -38.41300 -35.77695 -35.17079 -34.29581 -32.27511 -32.11698 -32.01265 -29.64494 -27.49210 -26.77054 -25.50624 -25.00561 -23.65635 -22.73560 -21.59921 -21.46509 -19.86689 -19.17062 -18.91011 -18.20610 -17.39558 -17.26469 -16.89850 -16.47988 -15.97581 -15.71430 -15.63012 -15.44955 -15.12876 -14.90986 -14.66819 -14.25703 -14.12343 -13.98336 -13.82866 -13.37511 -13.25130 -13.06324 -12.88090 -12.86937 -12.62981 -12.20410 -12.15961 -12.13521 -11.91461 -11.88618 -11.68283 -11.50281 -11.22085 -10.75613 -10.19840 -10.12324 -10.02425 -9.89422 -8.94913 -7.87536 -5.24754 -1.01343 -0.55516 0.82512 1.26983 1.42726 1.45861 1.54967 1.88161 2.12748 2.46634 2.53796 3.04701 3.30523 3.36346 3.39138 3.59426 3.61937 3.71661 3.79491 3.93641 4.00692 4.05041 4.06115 4.24766 4.42685 4.46767 4.56529 4.65651 4.67608 4.81407 4.85887 4.94600 5.02197 5.04812 5.11844 5.13906 5.20823 5.25255 5.40952 5.45881 5.54385 5.61388 5.72272 6.11739 6.13876 6.43810 6.95799 7.04064 7.09452 7.72775 8.37691 9.22520 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.003051 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.919195 B = 9176.098935 C = 9767.243612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.135 3.865 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.982 3.018 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.262 1.262 14 C 0.189 3.811 15 C 0.132 3.868 16 H 0.085 0.915 17 N -0.683 5.683 18 C 0.561 3.439 19 O -0.560 6.560 20 C 0.130 3.870 21 C -0.147 4.147 22 C -0.022 4.022 23 C -0.154 4.154 24 C -0.040 4.040 25 C -0.161 4.161 26 C 0.159 3.841 27 N -0.512 5.512 28 C 0.268 3.732 29 N -0.468 5.468 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.244 0.756 36 H 0.013 0.987 37 H -0.005 1.005 38 H 0.414 0.586 39 H 0.160 0.840 40 H 0.200 0.800 41 H 0.190 0.810 42 H 0.191 0.809 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 14.188 20.493 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.601 5.601 10 Si 0.810 3.190 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.186 1.186 14 C 0.062 3.938 15 C 0.027 3.973 16 H 0.103 0.897 17 N -0.332 5.332 18 C 0.346 3.654 19 O -0.438 6.438 20 C -0.026 4.026 21 C -0.168 4.168 22 C -0.048 4.048 23 C -0.159 4.159 24 C -0.066 4.066 25 C -0.180 4.180 26 C -0.017 4.017 27 N -0.222 5.222 28 C 0.030 3.970 29 N -0.181 5.181 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.013 0.987 38 H 0.251 0.749 39 H 0.178 0.822 40 H 0.217 0.783 41 H 0.207 0.793 42 H 0.209 0.791 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.946 13.905 18.769 25.796 hybrid contribution 1.375 -0.803 0.629 1.712 sum -9.571 13.102 19.398 25.289 Atomic orbital electron populations 1.21643 0.91448 1.02604 1.02825 1.22551 0.97550 0.98697 0.92803 0.89821 1.21856 0.85227 0.95853 0.96098 1.44733 1.09846 1.79050 1.01799 1.19535 0.88257 1.39324 0.90005 0.89184 1.25796 1.00675 1.02408 0.97504 1.70264 1.22393 1.55891 1.11595 0.84997 0.78846 0.76904 0.78230 1.21366 1.22383 1.18633 1.21087 0.92311 0.96574 0.83788 1.22227 0.97008 0.93668 0.84408 0.89728 1.45724 1.71161 1.11536 1.04790 1.18337 0.76595 0.86918 0.83540 1.90756 1.51450 1.15012 1.86540 1.21219 0.97830 0.89294 0.94235 1.21972 1.00207 1.03461 0.91150 1.21970 0.91287 0.90703 1.00890 1.20059 1.03377 0.96876 0.95577 1.22036 0.92353 0.93000 0.99188 1.22563 0.99335 0.97169 0.98952 1.23914 0.88689 1.00956 0.88151 1.67615 1.14777 1.02219 1.37575 1.19524 0.98389 0.91132 0.87926 1.67190 1.11845 1.03686 1.35410 0.92003 0.90149 0.92303 0.92511 0.94995 0.94671 0.96857 0.98710 0.74889 0.82246 0.78315 0.79329 0.79145 0.78425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.31 71.98 0.67 -2.71 16 2 C -0.10 -3.41 3.26 -9.40 -0.03 -3.44 16 3 H 0.08 2.92 8.01 -2.39 -0.02 2.90 16 4 C 0.13 5.65 6.70 86.86 0.58 6.23 16 5 N -0.63 -34.40 3.39 -691.97 -2.35 -36.75 16 6 C -0.24 -14.27 10.27 84.03 0.86 -13.40 16 7 H 0.09 4.96 7.84 -2.91 -0.02 4.94 16 8 C -0.07 -4.29 5.48 84.86 0.46 -3.83 16 9 N -0.95 -61.86 10.36 21.65 0.22 -61.64 16 10 Si 0.98 48.08 29.56 68.60 2.03 50.11 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 C 0.19 10.45 5.13 86.73 0.45 10.89 16 15 C 0.13 5.63 2.74 46.18 0.13 5.75 16 16 H 0.08 3.69 7.52 -2.39 -0.02 3.68 16 17 N -0.68 -26.76 5.11 -439.31 -2.24 -29.00 16 18 C 0.56 22.33 7.81 86.94 0.68 23.01 16 19 O -0.56 -25.27 15.96 -3.69 -0.06 -25.32 16 20 C 0.13 4.32 6.75 42.30 0.29 4.61 16 21 C -0.15 -3.72 9.54 22.36 0.21 -3.51 16 22 C -0.02 -0.38 9.89 22.47 0.22 -0.15 16 23 C -0.15 -2.97 5.75 -21.20 -0.12 -3.09 16 24 C -0.04 -0.37 9.90 22.49 0.22 -0.15 16 25 C -0.16 -1.20 10.04 22.17 0.22 -0.98 16 26 C 0.16 2.26 11.14 85.10 0.95 3.21 16 27 N -0.51 -13.35 10.43 -193.76 -2.02 -15.37 16 28 C 0.27 7.64 7.62 135.12 1.03 8.67 16 29 N -0.47 -15.82 9.56 -182.98 -1.75 -17.57 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.03 1.30 7.99 -2.39 -0.02 1.28 16 35 H 0.24 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.01 0.82 7.18 -2.39 -0.02 0.81 16 37 H -0.01 -0.34 7.61 -2.39 -0.02 -0.36 16 38 H 0.41 15.19 7.85 -92.70 -0.73 14.46 16 39 H 0.16 3.82 7.60 -2.91 -0.02 3.80 16 40 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 42 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 43 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -88.29 361.66 0.97 -87.32 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.31 Total: 17.11 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.82 Total: 31.11 kcal Atomic # 7 Polarization: -152.19 SS G_CDS: -8.14 Total: -160.33 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -88.29 0.97 -87.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079731921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.283 kcal (2) G-P(sol) polarization free energy of solvation -88.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds