Wall clock time and date at job start Tue Mar 31 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.88357 * 2 1 4 4 C 1.54910 * 111.00366 * 236.12084 * 2 1 3 5 5 N 1.47534 * 104.78228 * 204.90148 * 4 2 1 6 6 C 1.36937 * 125.63604 * 204.15424 * 5 4 2 7 7 H 1.08003 * 119.99677 * 354.83800 * 6 5 4 8 8 C 1.38815 * 119.99793 * 174.83310 * 6 5 4 9 9 N 1.31617 * 119.99880 * 7.06201 * 8 6 5 10 10 Si 1.86797 * 119.99588 * 187.06358 * 8 6 5 11 11 H 1.48502 * 109.47386 * 94.98825 * 10 8 6 12 12 H 1.48504 * 109.47013 * 214.98424 * 10 8 6 13 13 H 1.48492 * 109.47413 * 334.98676 * 10 8 6 14 14 C 1.47026 * 108.71297 * 24.11501 * 5 4 2 15 15 C 1.54319 * 107.27282 * 358.94517 * 14 5 4 16 16 H 1.09001 * 110.71875 * 96.16785 * 15 14 5 17 17 N 1.46504 * 110.87353 * 219.37031 * 15 14 5 18 18 C 1.34777 * 119.99734 * 268.61413 * 17 15 14 19 19 O 1.21502 * 120.00266 * 359.97438 * 18 17 15 20 20 C 1.48229 * 119.99785 * 179.97438 * 18 17 15 21 21 C 1.40575 * 119.75198 * 179.97438 * 20 18 17 22 22 N 1.31259 * 120.57239 * 179.97438 * 21 20 18 23 23 C 1.33778 * 119.80783 * 359.97438 * 22 21 20 24 24 C 1.40543 * 121.00312 * 180.02562 * 23 22 21 25 25 C 1.36080 * 119.75361 * 179.97438 * 24 23 22 26 26 C 1.39470 * 121.01727 * 0.02562 * 25 24 23 27 27 C 1.35991 * 120.98400 * 359.97420 * 26 25 24 28 28 C 1.40823 * 119.69716 * 0.02562 * 27 26 25 29 29 N 1.32171 * 119.74821 * 359.72318 * 20 18 17 30 30 H 1.09003 * 109.47420 * 299.29725 * 1 2 3 31 31 H 1.08997 * 109.47782 * 59.29904 * 1 2 3 32 32 H 1.09002 * 109.47184 * 179.30465 * 1 2 3 33 33 H 1.09000 * 110.36388 * 323.70943 * 4 2 1 34 34 H 1.08997 * 110.37079 * 86.03614 * 4 2 1 35 35 H 0.97003 * 119.99760 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.88355 * 239.52520 * 14 5 4 37 37 H 1.09000 * 110.00440 * 118.43693 * 14 5 4 38 38 H 0.96998 * 119.99640 * 88.61032 * 17 15 14 39 39 H 1.07995 * 119.70805 * 359.97331 * 21 20 18 40 40 H 1.08000 * 120.12446 * 359.95053 * 24 23 22 41 41 H 1.08002 * 119.49087 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.51294 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.15254 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4280 -1.2422 -0.7725 6 6 4.4658 -1.5641 -1.6060 7 1 4.3121 -1.5894 -2.6747 8 6 5.7152 -1.8578 -1.0772 9 7 5.8701 -1.9635 0.2256 10 14 7.1765 -2.1029 -2.2146 11 1 7.9233 -0.8258 -2.3434 12 1 8.0722 -3.1454 -1.6521 13 1 6.6960 -2.5324 -3.5524 14 6 3.4678 -1.2730 0.6969 15 6 2.0862 -0.8074 1.2025 16 1 1.4472 -1.6630 1.4211 17 7 2.2238 0.0494 2.3829 18 6 2.1948 -0.4931 3.6164 19 8 2.0541 -1.6926 3.7494 20 6 2.3347 0.3737 4.8106 21 6 2.3032 -0.1975 6.0947 22 7 2.4260 0.5548 7.1633 23 6 2.5831 1.8768 7.0313 24 6 2.7175 2.7059 8.1582 25 6 2.8766 4.0474 7.9945 26 6 2.9084 4.6173 6.7220 27 6 2.7817 3.8487 5.6073 28 6 2.6153 2.4562 5.7352 29 7 2.4931 1.6772 4.6600 30 1 -0.3634 0.5029 0.8962 31 1 -0.3634 0.5246 -0.8836 32 1 -0.3634 -1.0276 -0.0125 33 1 1.4522 -1.6703 -1.4026 34 1 2.1552 -0.1714 -2.0840 35 1 6.7433 -2.1683 0.5951 36 1 4.2425 -0.5981 1.0609 37 1 3.6671 -2.2870 1.0433 38 1 2.3359 1.0070 2.2767 39 1 2.1768 -1.2646 6.2029 40 1 2.6943 2.2799 9.1504 41 1 2.9791 4.6806 8.8634 42 1 3.0354 5.6851 6.6202 43 1 2.8086 4.3042 4.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079853306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:10 Heat of formation + Delta-G solvation = 63.514111 kcal Electronic energy + Delta-G solvation = -26873.121168 eV Core-core repulsion = 23112.219283 eV Total energy + Delta-G solvation = -3760.901885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71853 -39.57427 -37.88152 -37.22341 -35.19106 -33.89851 -32.62807 -31.20740 -30.89620 -30.37082 -27.93607 -26.01490 -25.59009 -24.76225 -23.53331 -22.53927 -21.33419 -20.10448 -19.88231 -18.73786 -18.55284 -17.53379 -16.86316 -15.97129 -15.91959 -15.59498 -15.24713 -14.88722 -14.68734 -14.28171 -14.22012 -13.92944 -13.70719 -13.17108 -12.78987 -12.73660 -12.27377 -12.22357 -12.10726 -12.03842 -11.95451 -11.86692 -11.70167 -11.34716 -11.00775 -10.78455 -10.68089 -10.41236 -10.18454 -9.98460 -9.91595 -9.68825 -9.29276 -9.26738 -8.93225 -8.61713 -8.50021 -6.82619 -5.69695 -3.03588 -0.22975 0.16312 1.56622 2.25253 3.08428 3.17301 3.41613 3.46531 3.49193 3.70894 3.82405 3.83041 3.98980 4.44316 4.51002 4.56854 4.76940 4.80280 4.91117 5.05794 5.15764 5.30529 5.45316 5.51941 5.53636 5.56097 5.71388 5.75391 5.87322 5.96862 5.98541 5.99386 6.15493 6.17361 6.31629 6.34343 6.48111 6.63148 6.69430 6.88303 6.93751 7.34397 7.53235 7.60371 7.82230 7.85317 8.25558 8.37564 9.21938 9.83005 10.48212 11.41483 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014377 B = 0.003033 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.029763 B = 9229.609562 C = 9842.660546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.117 3.883 16 H 0.093 0.907 17 N -0.685 5.685 18 C 0.571 3.429 19 O -0.523 6.523 20 C 0.071 3.929 21 C 0.129 3.871 22 N -0.427 5.427 23 C 0.090 3.910 24 C -0.088 4.088 25 C -0.092 4.092 26 C -0.105 4.105 27 C -0.073 4.073 28 C 0.076 3.924 29 N -0.393 5.393 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.043 0.957 35 H 0.252 0.748 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.406 0.594 39 H 0.189 0.811 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 13.798 14.133 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.046 3.954 15 C 0.013 3.987 16 H 0.111 0.889 17 N -0.335 5.335 18 C 0.353 3.647 19 O -0.398 6.398 20 C -0.086 4.086 21 C -0.046 4.046 22 N -0.141 5.141 23 C -0.035 4.035 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.093 4.093 28 C -0.050 4.050 29 N -0.111 5.111 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.242 0.758 39 H 0.206 0.794 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.866 12.996 14.288 21.689 hybrid contribution 1.030 0.323 -0.578 1.224 sum -8.836 13.320 13.710 21.058 Atomic orbital electron populations 1.21700 0.94988 1.01797 1.01033 1.22624 0.94878 0.99630 0.96216 0.90334 1.21615 0.87577 0.95028 0.94337 1.44425 1.08085 1.79065 1.01662 1.19051 0.87325 1.40391 0.89120 0.90263 1.24845 0.97643 1.01853 0.95999 1.69983 1.22532 1.54351 1.09524 0.86120 0.82805 0.77354 0.79627 1.21678 1.21777 1.20607 1.21481 0.89905 1.00421 0.83558 1.22631 1.00665 0.92832 0.82620 0.88932 1.45786 1.70928 1.11830 1.04930 1.17553 0.78006 0.86687 0.82472 1.90816 1.49593 1.13645 1.85787 1.22644 0.98846 0.91017 0.96096 1.24031 0.91407 1.02154 0.86972 1.68834 1.09384 1.04035 1.31826 1.19811 0.98507 0.91292 0.93867 1.20819 0.99355 0.92855 0.97739 1.21086 0.97351 0.94777 0.97979 1.21033 0.98699 1.00765 0.91963 1.20926 0.97692 0.90261 1.00380 1.19620 1.00928 0.95295 0.89184 1.68533 1.06111 1.04348 1.32152 0.93150 0.92693 0.92545 0.95948 0.93829 0.93738 0.92945 0.93422 0.75808 0.79394 0.84101 0.84570 0.84494 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.29 37.15 0.35 -1.49 16 2 C -0.11 -1.90 3.26 -88.47 -0.29 -2.19 16 3 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 4 C 0.14 2.85 6.71 -2.47 -0.02 2.83 16 5 N -0.61 -15.51 3.40 -169.98 -0.58 -16.09 16 6 C -0.23 -6.46 10.27 -15.06 -0.15 -6.62 16 7 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 8 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 9 N -0.92 -27.53 10.36 55.49 0.57 -26.95 16 10 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.17 4.27 5.14 -3.06 -0.02 4.26 16 15 C 0.12 2.24 2.78 -66.10 -0.18 2.06 16 16 H 0.09 1.84 7.44 -51.93 -0.39 1.45 16 17 N -0.69 -11.63 5.10 -52.85 -0.27 -11.90 16 18 C 0.57 9.92 7.82 -12.15 -0.09 9.83 16 19 O -0.52 -10.47 15.96 5.36 0.09 -10.38 16 20 C 0.07 1.06 6.76 -82.73 -0.56 0.50 16 21 C 0.13 1.79 10.75 -16.92 -0.18 1.60 16 22 N -0.43 -5.74 10.45 -10.53 -0.11 -5.85 16 23 C 0.09 1.11 6.60 -84.70 -0.56 0.55 16 24 C -0.09 -0.79 9.98 -39.49 -0.39 -1.19 16 25 C -0.09 -0.61 9.95 -39.90 -0.40 -1.01 16 26 C -0.10 -0.71 9.95 -39.93 -0.40 -1.11 16 27 C -0.07 -0.69 9.99 -39.41 -0.39 -1.08 16 28 C 0.08 0.96 6.60 -84.79 -0.56 0.40 16 29 N -0.39 -5.57 9.64 -7.39 -0.07 -5.64 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.05 1.44 7.19 -51.93 -0.37 1.07 16 37 H 0.05 1.36 7.61 -51.93 -0.40 0.97 16 38 H 0.41 6.20 7.90 -40.82 -0.32 5.88 16 39 H 0.19 2.32 7.62 -52.49 -0.40 1.92 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -33.60 361.83 -9.52 -43.13 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.64 Total: 3.87 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -3.95 Total: 7.06 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -0.45 Total: -66.44 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.60 -9.52 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079853306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.640 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds