Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.91520 * 2 1 4 4 C 1.54914 * 111.00620 * 236.10269 * 2 1 3 5 5 N 1.47422 * 104.82904 * 204.91774 * 4 2 1 6 6 C 1.36945 * 125.64445 * 204.08882 * 5 4 2 7 7 H 1.07999 * 119.99606 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99532 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00395 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47095 * 59.99771 * 10 8 6 12 12 H 1.48494 * 109.47311 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46792 * 300.00002 * 10 8 6 14 14 C 1.47023 * 108.70512 * 24.12493 * 5 4 2 15 15 C 1.54313 * 107.27203 * 358.94326 * 14 5 4 16 16 H 1.08991 * 110.72567 * 96.34745 * 15 14 5 17 17 N 1.46507 * 110.72076 * 219.44605 * 15 14 5 18 18 C 1.34776 * 119.99438 * 273.54824 * 17 15 14 19 19 O 1.21546 * 120.00620 * 359.97438 * 18 17 15 20 20 C 1.47869 * 119.99766 * 180.02562 * 18 17 15 21 21 C 1.40641 * 120.25753 * 359.97438 * 20 18 17 22 22 N 1.30854 * 121.65227 * 179.97438 * 21 20 18 23 23 C 1.33585 * 121.58717 * 0.02562 * 22 21 20 24 24 C 1.40637 * 121.62687 * 180.02562 * 23 22 21 25 25 N 1.31147 * 120.04202 * 179.97438 * 24 23 22 26 26 C 1.32493 * 122.88823 * 0.02562 * 25 24 23 27 27 C 1.36316 * 121.71208 * 0.02562 * 26 25 24 28 28 C 1.40590 * 118.65177 * 359.94694 * 27 26 25 29 29 C 1.38984 * 120.26205 * 179.97438 * 20 18 17 30 30 H 1.08999 * 109.47558 * 296.10009 * 1 2 3 31 31 H 1.09009 * 109.47321 * 56.09995 * 1 2 3 32 32 H 1.09003 * 109.47410 * 176.09637 * 1 2 3 33 33 H 1.08993 * 110.36679 * 86.07391 * 4 2 1 34 34 H 1.08999 * 110.45533 * 323.79787 * 4 2 1 35 35 H 0.97005 * 119.99775 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.88070 * 239.52179 * 14 5 4 37 37 H 1.09004 * 110.00719 * 118.43310 * 14 5 4 38 38 H 0.96997 * 120.00059 * 93.54068 * 17 15 14 39 39 H 1.07997 * 119.16945 * 0.25483 * 21 20 18 40 40 H 1.08003 * 119.97701 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.14671 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.67709 * 179.97438 * 27 26 25 43 43 H 1.08000 * 121.10875 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7733 6 6 4.4641 -1.5666 -1.6072 7 1 4.3333 -1.5116 -2.6779 8 6 5.6830 -1.9653 -1.0763 9 7 5.8421 -2.0328 0.2285 10 14 7.0978 -2.4061 -2.2138 11 1 7.4401 -1.2319 -3.0560 12 1 8.2800 -2.7971 -1.4048 13 1 6.6976 -3.5403 -3.0849 14 6 3.4674 -1.2741 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6632 1.4238 17 7 2.2286 0.0496 2.3815 18 6 2.3021 -0.5006 3.6097 19 8 2.2499 -1.7080 3.7390 20 6 2.4453 0.3649 4.8000 21 6 2.5058 1.7627 4.6568 22 7 2.6317 2.5541 5.6912 23 6 2.7096 2.0730 6.9350 24 6 2.8445 2.9229 8.0474 25 7 2.9176 2.4170 9.2551 26 6 2.8709 1.1145 9.4936 27 6 2.7427 0.2057 8.4857 28 6 2.6576 0.6737 7.1628 29 6 2.5212 -0.1965 6.0692 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1559 -0.1719 -2.0837 34 1 1.4525 -1.6703 -1.4044 35 1 6.6942 -2.3111 0.5994 36 1 4.2425 -0.5997 1.0599 37 1 3.6662 -2.2884 1.0423 38 1 2.2700 1.0131 2.2783 39 1 2.4422 2.1938 3.6687 40 1 2.8878 3.9929 7.9069 41 1 2.9361 0.7637 10.5130 42 1 2.7067 -0.8524 8.6992 43 1 2.4770 -1.2665 6.2096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080139578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = 60.399227 kcal Electronic energy + Delta-G solvation = -26754.227044 eV Core-core repulsion = 22993.190087 eV Total energy + Delta-G solvation = -3761.036956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52776 -39.77965 -38.21265 -37.41887 -34.20352 -33.91492 -32.83674 -31.75488 -30.70611 -30.41258 -28.01781 -25.81992 -25.41053 -24.81138 -23.58606 -22.86320 -21.40386 -20.17089 -19.97231 -18.70834 -18.09525 -17.67376 -16.92305 -16.44527 -15.89264 -15.34483 -15.27756 -14.97602 -14.53898 -14.38014 -14.36148 -13.79010 -13.51232 -13.47763 -13.21988 -12.91519 -12.84251 -12.82716 -12.64599 -12.04033 -11.74697 -11.39178 -11.12813 -11.05729 -10.79063 -10.71540 -10.47246 -10.31210 -10.08551 -10.02236 -9.97305 -9.73472 -9.60697 -9.56629 -8.81662 -8.66812 -8.58702 -6.86557 -5.71485 -3.06876 -0.22725 0.17824 1.44813 2.34966 3.15427 3.26099 3.40007 3.44213 3.45914 3.73498 3.78527 4.04110 4.12616 4.32512 4.38168 4.44589 4.49410 4.75159 4.89790 4.99032 5.16607 5.21710 5.25877 5.37442 5.38534 5.52413 5.57860 5.68915 5.74248 5.91449 5.93150 5.98849 6.09006 6.12687 6.18597 6.28687 6.42737 6.58290 6.62998 6.86487 7.31174 7.46527 7.54242 7.57980 7.72776 7.81935 8.22559 8.33218 9.19191 9.80035 10.44280 11.39110 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002885 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.694094 B = 9701.643267 C =10663.895301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.090 0.910 17 N -0.703 5.703 18 C 0.559 3.441 19 O -0.526 6.526 20 C -0.163 4.163 21 C 0.162 3.838 22 N -0.458 5.458 23 C 0.080 3.920 24 C 0.162 3.838 25 N -0.470 5.470 26 C 0.070 3.930 27 C -0.132 4.132 28 C -0.086 4.086 29 C 0.005 3.995 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.395 0.605 39 H 0.168 0.832 40 H 0.174 0.826 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 8.644 13.834 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 H 0.097 0.903 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.344 3.656 19 O -0.403 6.403 20 C -0.170 4.170 21 C -0.012 4.012 22 N -0.166 5.166 23 C -0.043 4.043 24 C -0.011 4.011 25 N -0.179 5.179 26 C -0.073 4.073 27 C -0.152 4.152 28 C -0.093 4.093 29 C -0.022 4.022 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.230 0.770 39 H 0.185 0.815 40 H 0.191 0.809 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.052 9.048 14.745 20.008 hybrid contribution 0.826 -1.314 -1.274 2.008 sum -9.225 7.734 13.471 18.066 Atomic orbital electron populations 1.21712 0.94933 1.01888 1.01066 1.22625 0.94891 0.99564 0.96270 0.90299 1.21590 0.87630 0.95052 0.94300 1.44397 1.07881 1.79261 1.01717 1.18998 0.89305 1.38776 0.88902 0.90339 1.24827 0.97894 1.01622 0.96014 1.69954 1.24292 1.53152 1.09217 0.86199 0.81826 0.78273 0.79435 1.21165 1.21616 1.21133 1.21474 0.89811 1.00524 0.83445 1.22580 1.00614 0.92673 0.82556 0.89233 1.45856 1.73301 1.10280 1.05860 1.17850 0.77396 0.87551 0.82777 1.90810 1.49457 1.13998 1.86000 1.21252 1.05105 0.95379 0.95221 1.23198 0.90996 0.88860 0.98154 1.67882 1.12115 1.38690 0.97946 1.20052 0.99424 0.91461 0.93410 1.23135 0.92401 1.00352 0.85219 1.67452 1.11073 1.15718 1.23670 1.22293 0.96947 0.88021 0.99996 1.22012 0.99707 1.01964 0.91526 1.18959 1.01055 0.94215 0.95060 1.21953 0.89234 1.01076 0.89907 0.93081 0.92659 0.92529 0.93888 0.95972 0.93674 0.93118 0.93287 0.76965 0.81545 0.80878 0.82274 0.83676 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.11 -1.77 3.25 -88.47 -0.29 -2.06 16 3 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 4 C 0.14 2.75 6.70 -2.53 -0.02 2.73 16 5 N -0.61 -15.15 3.39 -170.08 -0.58 -15.73 16 6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.17 4.17 5.12 -3.07 -0.02 4.15 16 15 C 0.12 2.16 2.70 -66.10 -0.18 1.98 16 16 H 0.09 1.71 7.59 -51.93 -0.39 1.31 16 17 N -0.70 -10.44 5.08 -52.97 -0.27 -10.71 16 18 C 0.56 8.86 7.77 -12.32 -0.10 8.77 16 19 O -0.53 -10.34 16.11 5.33 0.09 -10.26 16 20 C -0.16 -2.09 5.89 -104.77 -0.62 -2.71 16 21 C 0.16 1.82 10.68 -17.06 -0.18 1.63 16 22 N -0.46 -5.41 10.33 -10.65 -0.11 -5.52 16 23 C 0.08 0.93 6.62 -84.81 -0.56 0.36 16 24 C 0.16 1.65 11.25 -16.94 -0.19 1.46 16 25 N -0.47 -4.87 10.28 -13.11 -0.13 -5.00 16 26 C 0.07 0.60 11.08 -17.96 -0.20 0.40 16 27 C -0.13 -1.15 9.88 -39.39 -0.39 -1.54 16 28 C -0.09 -0.95 5.75 -106.80 -0.61 -1.57 16 29 C 0.01 0.06 9.51 -38.48 -0.37 -0.31 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 35 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.05 1.35 7.27 -51.93 -0.38 0.97 16 37 H 0.05 1.38 7.50 -51.93 -0.39 0.99 16 38 H 0.40 4.58 6.54 -40.82 -0.27 4.32 16 39 H 0.17 1.40 6.37 -52.49 -0.33 1.07 16 40 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.16 1.77 7.71 -52.49 -0.40 1.36 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -34.22 359.45 -9.16 -43.38 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.50 Total: 2.85 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.62 Total: 5.13 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.52 Total: -63.60 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.22 -9.16 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080139578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.778 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds