Wall clock time and date at job start Tue Mar 31 2020 14:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 110.91520 * 2 1 4 4 C 1.54914 * 111.00620 * 236.10269 * 2 1 3 5 5 N 1.47422 * 104.82904 * 204.91774 * 4 2 1 6 6 C 1.36945 * 125.64445 * 204.08882 * 5 4 2 7 7 H 1.07999 * 119.99606 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99532 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00395 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47095 * 59.99771 * 10 8 6 12 12 H 1.48494 * 109.47311 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46792 * 300.00002 * 10 8 6 14 14 C 1.47023 * 108.70512 * 24.12493 * 5 4 2 15 15 C 1.54313 * 107.27203 * 358.94326 * 14 5 4 16 16 H 1.08991 * 110.72567 * 96.34745 * 15 14 5 17 17 N 1.46507 * 110.72076 * 219.44605 * 15 14 5 18 18 C 1.34776 * 119.99438 * 273.54824 * 17 15 14 19 19 O 1.21546 * 120.00620 * 359.97438 * 18 17 15 20 20 C 1.47869 * 119.99766 * 180.02562 * 18 17 15 21 21 C 1.40641 * 120.25753 * 359.97438 * 20 18 17 22 22 N 1.30854 * 121.65227 * 179.97438 * 21 20 18 23 23 C 1.33585 * 121.58717 * 0.02562 * 22 21 20 24 24 C 1.40637 * 121.62687 * 180.02562 * 23 22 21 25 25 N 1.31147 * 120.04202 * 179.97438 * 24 23 22 26 26 C 1.32493 * 122.88823 * 0.02562 * 25 24 23 27 27 C 1.36316 * 121.71208 * 0.02562 * 26 25 24 28 28 C 1.40590 * 118.65177 * 359.94694 * 27 26 25 29 29 C 1.38984 * 120.26205 * 179.97438 * 20 18 17 30 30 H 1.08999 * 109.47558 * 296.10009 * 1 2 3 31 31 H 1.09009 * 109.47321 * 56.09995 * 1 2 3 32 32 H 1.09003 * 109.47410 * 176.09637 * 1 2 3 33 33 H 1.08993 * 110.36679 * 86.07391 * 4 2 1 34 34 H 1.08999 * 110.45533 * 323.79787 * 4 2 1 35 35 H 0.97005 * 119.99775 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.88070 * 239.52179 * 14 5 4 37 37 H 1.09004 * 110.00719 * 118.43310 * 14 5 4 38 38 H 0.96997 * 120.00059 * 93.54068 * 17 15 14 39 39 H 1.07997 * 119.16945 * 0.25483 * 21 20 18 40 40 H 1.08003 * 119.97701 * 359.97438 * 24 23 22 41 41 H 1.08002 * 119.14671 * 180.02562 * 26 25 24 42 42 H 1.08001 * 120.67709 * 179.97438 * 27 26 25 43 43 H 1.08000 * 121.10875 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7733 6 6 4.4641 -1.5666 -1.6072 7 1 4.3333 -1.5116 -2.6779 8 6 5.6830 -1.9653 -1.0763 9 7 5.8421 -2.0328 0.2285 10 14 7.0978 -2.4061 -2.2138 11 1 7.4401 -1.2319 -3.0560 12 1 8.2800 -2.7971 -1.4048 13 1 6.6976 -3.5403 -3.0849 14 6 3.4674 -1.2741 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6632 1.4238 17 7 2.2286 0.0496 2.3815 18 6 2.3021 -0.5006 3.6097 19 8 2.2499 -1.7080 3.7390 20 6 2.4453 0.3649 4.8000 21 6 2.5058 1.7627 4.6568 22 7 2.6317 2.5541 5.6912 23 6 2.7096 2.0730 6.9350 24 6 2.8445 2.9229 8.0474 25 7 2.9176 2.4170 9.2551 26 6 2.8709 1.1145 9.4936 27 6 2.7427 0.2057 8.4857 28 6 2.6576 0.6737 7.1628 29 6 2.5212 -0.1965 6.0692 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 2.1559 -0.1719 -2.0837 34 1 1.4525 -1.6703 -1.4044 35 1 6.6942 -2.3111 0.5994 36 1 4.2425 -0.5997 1.0599 37 1 3.6662 -2.2884 1.0423 38 1 2.2700 1.0131 2.2783 39 1 2.4422 2.1938 3.6687 40 1 2.8878 3.9929 7.9069 41 1 2.9361 0.7637 10.5130 42 1 2.7067 -0.8524 8.6992 43 1 2.4770 -1.2665 6.2096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080139578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:36 Heat of formation + Delta-G solvation = 36.494360 kcal Electronic energy + Delta-G solvation = -26755.263636 eV Core-core repulsion = 22993.190087 eV Total energy + Delta-G solvation = -3762.073549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38876 -41.03768 -39.38855 -38.68444 -35.74996 -34.84240 -34.42921 -32.75997 -32.14002 -31.48086 -29.62139 -27.44613 -26.57202 -25.65074 -25.11186 -23.68827 -22.80058 -21.64558 -21.46168 -19.67167 -19.09345 -18.89674 -18.54852 -17.40196 -17.27740 -16.88342 -16.25964 -16.13014 -15.76457 -15.66557 -15.45655 -15.24678 -14.78272 -14.53111 -14.37131 -14.23512 -14.03591 -13.84759 -13.64126 -13.48634 -13.33014 -13.03915 -12.85006 -12.57217 -12.26553 -12.08228 -11.96284 -11.85120 -11.66899 -11.47799 -11.37871 -10.98751 -10.74007 -10.54968 -10.53948 -10.07466 -9.56525 -8.92306 -7.84951 -5.22387 -1.09053 -0.65871 0.61008 1.39826 1.44385 1.47986 1.54241 1.93806 2.18620 2.49077 2.91469 2.93981 3.25276 3.33000 3.34989 3.45931 3.53284 3.57510 3.62915 3.76408 3.88966 4.04826 4.10447 4.16578 4.34288 4.46780 4.50036 4.62461 4.64804 4.73442 4.80610 4.90451 4.93401 5.07545 5.10033 5.13756 5.18624 5.30496 5.44871 5.45466 5.51624 5.60373 5.77223 6.16746 6.42266 6.48811 6.82193 7.05008 7.11621 7.76101 8.39242 9.23812 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.002885 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.694094 B = 9701.643267 C =10663.895301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.096 0.904 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.952 5.952 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.298 1.298 13 H -0.277 1.277 14 C 0.187 3.813 15 C 0.137 3.863 16 H 0.078 0.922 17 N -0.691 5.691 18 C 0.561 3.439 19 O -0.572 6.572 20 C -0.177 4.177 21 C 0.165 3.835 22 N -0.465 5.465 23 C 0.065 3.935 24 C 0.156 3.844 25 N -0.481 5.481 26 C 0.070 3.930 27 C -0.129 4.129 28 C -0.099 4.099 29 C 0.007 3.993 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.026 0.974 35 H 0.243 0.757 36 H 0.018 0.982 37 H -0.009 1.009 38 H 0.414 0.586 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.192 0.808 42 H 0.172 0.828 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.680 10.400 14.131 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.114 0.886 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.225 1.225 13 H -0.203 1.203 14 C 0.061 3.939 15 C 0.031 3.969 16 H 0.096 0.904 17 N -0.342 5.342 18 C 0.348 3.652 19 O -0.452 6.452 20 C -0.184 4.184 21 C -0.010 4.010 22 N -0.173 5.173 23 C -0.058 4.058 24 C -0.016 4.016 25 N -0.190 5.190 26 C -0.073 4.073 27 C -0.149 4.149 28 C -0.106 4.106 29 C -0.020 4.020 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.009 0.991 38 H 0.252 0.748 39 H 0.209 0.791 40 H 0.209 0.791 41 H 0.209 0.791 42 H 0.189 0.811 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.388 10.867 15.021 21.758 hybrid contribution 1.213 -1.891 -1.282 2.586 sum -10.175 8.977 13.739 19.310 Atomic orbital electron populations 1.21671 0.91570 1.02353 1.03183 1.22555 0.97367 0.99043 0.92321 0.88592 1.21876 0.85161 0.95842 0.96493 1.44722 1.09527 1.79245 1.01978 1.19466 0.90117 1.37576 0.89833 0.89399 1.25706 1.00681 1.02441 0.97402 1.70223 1.24136 1.54663 1.11062 0.85143 0.78253 0.78375 0.77515 1.19801 1.22492 1.20340 1.21112 0.92618 0.96676 0.83510 1.22128 0.96632 0.93611 0.84518 0.90361 1.45641 1.72839 1.10941 1.04801 1.18298 0.76010 0.87280 0.83648 1.90785 1.51569 1.16142 1.86711 1.21010 1.07512 0.95776 0.94076 1.23486 0.90346 0.87976 0.99184 1.67925 1.12502 1.38682 0.98187 1.20348 0.99644 0.92006 0.93795 1.23425 0.92250 1.01140 0.84822 1.67521 1.11064 1.16740 1.23663 1.22844 0.95583 0.87391 1.01464 1.22326 0.98645 1.03513 0.90409 1.19138 1.01545 0.94054 0.95839 1.22091 0.88353 1.01444 0.90072 0.91120 0.90328 0.93005 0.92596 0.95631 0.94750 0.96398 0.99076 0.74769 0.79087 0.79144 0.79141 0.81071 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.31 71.98 0.67 -2.08 16 2 C -0.09 -2.72 3.25 -9.40 -0.03 -2.75 16 3 H 0.10 2.52 8.00 -2.38 -0.02 2.51 16 4 C 0.13 5.00 6.70 86.86 0.58 5.58 16 5 N -0.63 -32.09 3.39 -692.01 -2.35 -34.44 16 6 C -0.24 -13.51 10.28 84.03 0.86 -12.64 16 7 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 8 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 9 N -0.95 -59.15 10.31 21.65 0.22 -58.93 16 10 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 C 0.19 9.47 5.12 86.72 0.44 9.91 16 15 C 0.14 4.97 2.70 46.17 0.12 5.10 16 16 H 0.08 3.06 7.59 -2.39 -0.02 3.04 16 17 N -0.69 -20.40 5.08 -439.78 -2.24 -22.63 16 18 C 0.56 18.15 7.77 86.79 0.67 18.83 16 19 O -0.57 -23.59 16.11 -3.86 -0.06 -23.65 16 20 C -0.18 -4.53 5.89 -19.96 -0.12 -4.65 16 21 C 0.16 3.51 10.68 85.43 0.91 4.43 16 22 N -0.46 -10.44 10.33 -187.60 -1.94 -12.38 16 23 C 0.07 1.43 6.62 40.36 0.27 1.70 16 24 C 0.16 2.95 11.25 85.38 0.96 3.91 16 25 N -0.48 -9.02 10.28 -195.39 -2.01 -11.03 16 26 C 0.07 1.03 11.08 84.14 0.93 1.96 16 27 C -0.13 -2.01 9.88 22.40 0.22 -1.79 16 28 C -0.10 -2.10 5.75 -21.27 -0.12 -2.22 16 29 C 0.01 0.17 9.51 22.98 0.22 0.39 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.03 0.97 7.99 -2.39 -0.02 0.95 16 35 H 0.24 14.90 8.31 -92.70 -0.77 14.13 16 36 H 0.02 1.00 7.27 -2.39 -0.02 0.99 16 37 H -0.01 -0.55 7.50 -2.39 -0.02 -0.57 16 38 H 0.41 8.97 6.54 -92.71 -0.61 8.37 16 39 H 0.19 2.86 6.37 -2.91 -0.02 2.84 16 40 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 43 H 0.16 3.64 7.71 -2.91 -0.02 3.62 16 Total: -1.00 -78.89 359.45 1.16 -77.72 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.44 Total: 14.83 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 7.07 Total: 22.11 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -8.31 Total: -139.41 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -78.89 1.16 -77.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080139578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.216 kcal (2) G-P(sol) polarization free energy of solvation -78.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds