Wall clock time and date at job start Tue Mar 31 2020 14:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.91396 * 2 1 4 4 C 1.54913 * 111.00305 * 236.09841 * 2 1 3 5 5 N 1.47433 * 104.83034 * 204.91331 * 4 2 1 6 6 C 1.36932 * 125.64533 * 204.16580 * 5 4 2 7 7 H 1.07993 * 120.00311 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99691 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47054 * 89.99712 * 10 8 6 12 12 H 1.48500 * 109.47067 * 210.00087 * 10 8 6 13 13 H 1.48504 * 109.46995 * 329.99952 * 10 8 6 14 14 C 1.47019 * 108.70003 * 24.12755 * 5 4 2 15 15 C 1.54318 * 107.27621 * 358.93895 * 14 5 4 16 16 H 1.09001 * 110.71845 * 96.34765 * 15 14 5 17 17 N 1.46500 * 110.72403 * 219.44236 * 15 14 5 18 18 C 1.34778 * 119.99797 * 273.54811 * 17 15 14 19 19 O 1.21522 * 119.99987 * 359.97438 * 18 17 15 20 20 C 1.48011 * 119.99709 * 179.97438 * 18 17 15 21 21 C 1.38895 * 121.16628 * 354.22398 * 20 18 17 22 22 C 1.39348 * 119.66287 * 180.02562 * 21 20 18 23 23 N 1.31102 * 121.90916 * 359.97438 * 22 21 20 24 24 C 1.33283 * 121.61515 * 0.02562 * 23 22 21 25 25 C 1.40840 * 121.91694 * 180.02562 * 24 23 22 26 26 C 1.36172 * 118.76788 * 180.02562 * 25 24 23 27 27 N 1.32534 * 121.96061 * 359.97438 * 26 25 24 28 28 C 1.31345 * 122.60180 * 0.02562 * 27 26 25 29 29 C 1.40084 * 119.87592 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47019 * 296.09826 * 1 2 3 31 31 H 1.09002 * 109.47301 * 56.10079 * 1 2 3 32 32 H 1.09001 * 109.46667 * 176.09814 * 1 2 3 33 33 H 1.09001 * 110.36386 * 86.07749 * 4 2 1 34 34 H 1.08994 * 110.46208 * 323.79925 * 4 2 1 35 35 H 0.96999 * 120.00677 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.88108 * 239.52001 * 14 5 4 37 37 H 1.09000 * 110.00780 * 118.43442 * 14 5 4 38 38 H 0.96997 * 119.99760 * 93.54352 * 17 15 14 39 39 H 1.07997 * 120.16985 * 0.02562 * 21 20 18 40 40 H 1.07999 * 119.04365 * 180.02562 * 22 21 20 41 41 H 1.07996 * 120.61592 * 359.97438 * 25 24 23 42 42 H 1.08000 * 119.01802 * 180.28006 * 26 25 24 43 43 H 1.08003 * 120.06200 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7734 6 6 4.4644 -1.5653 -1.6072 7 1 4.3339 -1.5099 -2.6778 8 6 5.6838 -1.9631 -1.0764 9 7 5.8431 -2.0301 0.2284 10 14 7.0987 -2.4034 -2.2139 11 1 7.9014 -1.1870 -2.4991 12 1 7.9593 -3.4228 -1.5617 13 1 6.5600 -2.9503 -3.4851 14 6 3.4675 -1.2740 0.6960 15 6 2.0862 -0.8078 1.2022 16 1 1.4480 -1.6631 1.4240 17 7 2.2287 0.0497 2.3815 18 6 2.3023 -0.5004 3.6097 19 8 2.2500 -1.7076 3.7389 20 6 2.4468 0.3659 4.8010 21 6 2.6281 1.7372 4.6749 22 6 2.7612 2.5232 5.8178 23 7 2.7202 2.0073 7.0224 24 6 2.5491 0.6999 7.2170 25 6 2.5037 0.1389 8.5080 26 6 2.3265 -1.2055 8.6326 27 7 2.1958 -1.9966 7.5773 28 6 2.2282 -1.5436 6.3449 29 6 2.4061 -0.1742 6.1092 30 1 -0.3633 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 2.1559 -0.1720 -2.0837 34 1 1.4525 -1.6704 -1.4043 35 1 6.6953 -2.3077 0.5994 36 1 4.2426 -0.5996 1.0598 37 1 3.6663 -2.2882 1.0423 38 1 2.2701 1.0132 2.2783 39 1 2.6657 2.1920 3.6961 40 1 2.9013 3.5885 5.7082 41 1 2.6082 0.7633 9.3830 42 1 2.2864 -1.6393 9.6208 43 1 2.1170 -2.2255 5.5147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080201699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:06 Heat of formation + Delta-G solvation = 66.616449 kcal Electronic energy + Delta-G solvation = -27228.543647 eV Core-core repulsion = 23467.776290 eV Total energy + Delta-G solvation = -3760.767357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52484 -39.64018 -38.16832 -37.65162 -34.25161 -33.69032 -32.73705 -31.72310 -30.60781 -30.43518 -28.00259 -25.83179 -25.49920 -24.34693 -23.99456 -23.05202 -21.13302 -20.17807 -19.93049 -18.64963 -18.07975 -17.43835 -16.92621 -16.15647 -16.02579 -15.30461 -15.12606 -14.95262 -14.86850 -14.40322 -14.29535 -13.85972 -13.69642 -13.28267 -13.21030 -12.93962 -12.87651 -12.75855 -12.18326 -12.09732 -11.77546 -11.42645 -11.09708 -10.83735 -10.81005 -10.72198 -10.49577 -10.40790 -10.06296 -9.99340 -9.87050 -9.74688 -9.55771 -9.34773 -8.82054 -8.66281 -8.60108 -6.89017 -5.73689 -3.09128 -0.23479 0.46124 1.39817 2.64763 3.03430 3.13637 3.38269 3.43466 3.46055 3.87474 3.91959 4.22208 4.33278 4.36383 4.47621 4.48937 4.52485 4.93865 4.95173 5.09240 5.20915 5.25817 5.33285 5.35229 5.50431 5.53630 5.65167 5.69345 5.75168 5.87952 5.88853 6.04792 6.07235 6.16112 6.25145 6.38302 6.45584 6.55097 6.61507 6.82496 7.39211 7.46517 7.51604 7.65595 7.79139 7.82213 8.19014 8.24134 9.17019 9.77799 10.41702 11.37102 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003299 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.103772 B = 8486.081823 C = 9246.438907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.118 3.882 16 H 0.092 0.908 17 N -0.696 5.696 18 C 0.556 3.444 19 O -0.518 6.518 20 C -0.034 4.034 21 C -0.148 4.148 22 C 0.150 3.850 23 N -0.467 5.467 24 C 0.154 3.846 25 C -0.154 4.154 26 C 0.094 3.906 27 N -0.490 5.490 28 C 0.166 3.834 29 C -0.135 4.135 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.397 0.603 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.146 0.854 42 H 0.159 0.841 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 10.258 11.447 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.346 5.346 18 C 0.341 3.659 19 O -0.395 6.395 20 C -0.048 4.048 21 C -0.169 4.169 22 C -0.024 4.024 23 N -0.176 5.176 24 C 0.028 3.972 25 C -0.174 4.174 26 C -0.051 4.051 27 N -0.198 5.198 28 C -0.006 4.006 29 C -0.140 4.140 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.232 0.768 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.360 8.858 12.644 18.592 hybrid contribution 1.046 0.833 -1.422 1.952 sum -9.314 9.691 11.222 17.510 Atomic orbital electron populations 1.21715 0.94888 1.01970 1.01058 1.22624 0.94922 0.99517 0.96248 0.90353 1.21595 0.87649 0.95077 0.94257 1.44392 1.07855 1.79302 1.01673 1.19040 0.89245 1.38800 0.88931 0.90272 1.24823 0.97892 1.01566 0.96006 1.69950 1.24229 1.53203 1.09226 0.86126 0.82290 0.77822 0.79546 1.21621 1.21633 1.20637 1.21477 0.89645 1.00613 0.83520 1.22643 1.00801 0.92708 0.82428 0.88999 1.45844 1.72528 1.10474 1.05725 1.17942 0.77589 0.87514 0.82827 1.90622 1.49653 1.14105 1.85141 1.20489 0.96978 0.94056 0.93275 1.22522 0.99813 0.93202 1.01374 1.23109 0.91615 1.00847 0.86786 1.67851 1.12137 1.12188 1.25389 1.18904 0.95879 0.89083 0.93377 1.21679 1.03318 0.96481 0.95968 1.22420 0.94326 0.90061 0.98254 1.67773 1.12884 1.39830 0.99291 1.24558 0.88011 0.92664 0.95323 1.19687 1.04034 0.97149 0.93108 0.93113 0.92634 0.92447 0.93873 0.95893 0.93663 0.93131 0.93138 0.76786 0.83415 0.81235 0.83669 0.82380 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.31 37.16 0.35 -1.30 16 2 C -0.11 -1.71 3.25 -88.47 -0.29 -2.00 16 3 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 4 C 0.14 2.70 6.70 -2.52 -0.02 2.68 16 5 N -0.61 -14.90 3.39 -170.08 -0.58 -15.48 16 6 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 10 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.17 4.09 5.12 -3.07 -0.02 4.07 16 15 C 0.12 2.07 2.70 -66.10 -0.18 1.89 16 16 H 0.09 1.70 7.59 -51.93 -0.39 1.30 16 17 N -0.70 -9.99 5.09 -52.92 -0.27 -10.26 16 18 C 0.56 8.68 7.76 -12.25 -0.10 8.58 16 19 O -0.52 -9.76 13.33 5.35 0.07 -9.69 16 20 C -0.03 -0.46 5.94 -104.37 -0.62 -1.08 16 21 C -0.15 -1.46 9.60 -38.93 -0.37 -1.83 16 22 C 0.15 1.40 11.14 -17.45 -0.19 1.21 16 23 N -0.47 -5.60 10.33 -10.95 -0.11 -5.72 16 24 C 0.15 2.02 6.63 -84.88 -0.56 1.46 16 25 C -0.15 -1.73 10.08 -39.34 -0.40 -2.13 16 26 C 0.09 1.07 11.06 -17.99 -0.20 0.87 16 27 N -0.49 -7.04 10.31 -13.24 -0.14 -7.18 16 28 C 0.17 2.51 10.52 -17.07 -0.18 2.33 16 29 C -0.13 -1.93 5.76 -106.55 -0.61 -2.54 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.05 1.32 7.27 -51.93 -0.38 0.94 16 37 H 0.05 1.40 7.51 -51.93 -0.39 1.01 16 38 H 0.40 4.38 6.70 -40.82 -0.27 4.11 16 39 H 0.15 1.00 6.56 -52.49 -0.34 0.65 16 40 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.20 3.28 5.08 -52.48 -0.27 3.01 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -33.78 354.48 -9.15 -42.93 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.38 Total: 4.10 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -3.64 Total: 5.46 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.52 Total: -65.07 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.78 -9.15 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080201699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.547 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds