Wall clock time and date at job start Tue Mar 31 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88684 * 2 1 4 4 C 1.54905 * 111.00483 * 236.11937 * 2 1 3 5 5 N 1.47530 * 104.77961 * 204.90259 * 4 2 1 6 6 C 1.36941 * 125.63620 * 204.08245 * 5 4 2 7 7 H 1.07999 * 119.99774 * 354.83267 * 6 5 4 8 8 C 1.38812 * 119.99993 * 174.83519 * 6 5 4 9 9 N 1.31618 * 120.00065 * 7.05146 * 8 6 5 10 10 Si 1.86803 * 119.99807 * 187.05715 * 8 6 5 11 11 H 1.48491 * 109.47407 * 94.98286 * 10 8 6 12 12 H 1.48497 * 109.46770 * 214.98421 * 10 8 6 13 13 H 1.48499 * 109.46773 * 334.98232 * 10 8 6 14 14 C 1.47024 * 108.71833 * 24.12212 * 5 4 2 15 15 C 1.54331 * 107.26905 * 358.93799 * 14 5 4 16 16 H 1.09002 * 110.71506 * 96.17100 * 15 14 5 17 17 N 1.46492 * 110.72059 * 219.44562 * 15 14 5 18 18 C 1.34777 * 120.00134 * 268.52529 * 17 15 14 19 19 O 1.21548 * 119.99832 * 359.97438 * 18 17 15 20 20 C 1.47923 * 120.00181 * 180.02562 * 18 17 15 21 21 C 1.38930 * 119.84722 * 179.72358 * 20 18 17 22 22 C 1.40645 * 117.38917 * 179.78612 * 21 20 18 23 23 C 1.40264 * 122.03991 * 180.17793 * 22 21 20 24 24 C 1.36269 * 119.47410 * 180.29907 * 23 22 21 25 25 C 1.39322 * 120.87249 * 359.97438 * 24 23 22 26 26 C 1.36229 * 121.16149 * 0.02562 * 25 24 23 27 27 C 1.40337 * 119.67856 * 359.97438 * 26 25 24 28 28 N 1.33811 * 121.62038 * 179.97438 * 27 26 25 29 29 N 1.28441 * 121.68863 * 180.02562 * 28 27 26 30 30 H 1.08994 * 109.46914 * 299.30268 * 1 2 3 31 31 H 1.08995 * 109.46708 * 59.30132 * 1 2 3 32 32 H 1.08999 * 109.46980 * 179.29916 * 1 2 3 33 33 H 1.09002 * 110.36425 * 323.71518 * 4 2 1 34 34 H 1.08999 * 110.37034 * 86.04351 * 4 2 1 35 35 H 0.97002 * 119.99705 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.88276 * 239.52384 * 14 5 4 37 37 H 1.08994 * 110.01720 * 118.42674 * 14 5 4 38 38 H 0.97005 * 120.00238 * 88.52650 * 17 15 14 39 39 H 1.08005 * 121.30659 * 0.02562 * 21 20 18 40 40 H 1.07998 * 120.25844 * 0.28852 * 23 22 21 41 41 H 1.08000 * 119.56224 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.42014 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.15704 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4281 -1.2421 -0.7724 6 6 4.4655 -1.5654 -1.6058 7 1 4.3115 -1.5920 -2.6744 8 6 5.7150 -1.8590 -1.0771 9 7 5.8704 -1.9630 0.2258 10 14 7.1759 -2.1061 -2.2147 11 1 7.9231 -0.8296 -2.3454 12 1 8.0712 -3.1483 -1.6512 13 1 6.6946 -2.5372 -3.5517 14 6 3.4679 -1.2731 0.6970 15 6 2.0861 -0.8074 1.2026 16 1 1.4471 -1.6630 1.4212 17 7 2.2277 0.0503 2.3818 18 6 2.1993 -0.4907 3.6159 19 8 2.0558 -1.6901 3.7505 20 6 2.3418 0.3754 4.8066 21 6 2.3063 -0.1849 6.0774 22 6 2.4513 0.6855 7.1725 23 6 2.4339 0.2243 8.4971 24 6 2.5730 1.1149 9.5190 25 6 2.7324 2.4754 9.2650 26 6 2.7537 2.9568 7.9908 27 6 2.6136 2.0714 6.9110 28 7 2.6284 2.5020 5.6442 29 7 2.4998 1.6929 4.6550 30 1 -0.3633 0.5029 0.8961 31 1 -0.3632 0.5246 -0.8836 32 1 -0.3633 -1.0276 -0.0126 33 1 1.4523 -1.6702 -1.4025 34 1 2.1555 -0.1714 -2.0839 35 1 6.7436 -2.1678 0.5952 36 1 4.2426 -0.5982 1.0611 37 1 3.6670 -2.2871 1.0436 38 1 2.3419 1.0076 2.2744 39 1 2.1764 -1.2478 6.2187 40 1 2.3112 -0.8283 8.7052 41 1 2.5594 0.7613 10.5394 42 1 2.8410 3.1606 10.0928 43 1 2.8779 4.0148 7.8125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080235866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:33 Heat of formation + Delta-G solvation = 47.784491 kcal Electronic energy + Delta-G solvation = -26739.783573 eV Core-core repulsion = 22978.199601 eV Total energy + Delta-G solvation = -3761.583972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51743 -40.96732 -39.28228 -38.68453 -35.72647 -34.84877 -34.38583 -32.74842 -32.18337 -31.56287 -29.60186 -27.44041 -26.43147 -26.27571 -25.10581 -23.53329 -22.77518 -21.63273 -21.51912 -19.78960 -19.53764 -18.90233 -18.11113 -17.38114 -17.11506 -16.88502 -16.63774 -15.85597 -15.72620 -15.66032 -15.43018 -15.34546 -14.80032 -14.59235 -14.36667 -14.11365 -13.79437 -13.53584 -13.40213 -13.36502 -13.07557 -13.01268 -12.87184 -12.61972 -12.25246 -12.18838 -12.10810 -11.91990 -11.89311 -11.69054 -11.49687 -11.24762 -10.98144 -10.74960 -10.48483 -10.11799 -9.47229 -8.94089 -7.87245 -5.24058 -1.18497 -0.77205 0.62890 1.21396 1.43436 1.46291 1.55322 1.85653 2.07718 2.47760 2.66624 2.80901 3.16560 3.28187 3.31385 3.42543 3.58225 3.71530 3.72926 3.83337 4.01688 4.07395 4.12169 4.18113 4.40629 4.45520 4.52120 4.59295 4.68721 4.68969 4.87486 4.91039 5.03702 5.05626 5.05973 5.12044 5.24327 5.26749 5.31778 5.41811 5.47670 5.55999 5.70103 5.73023 6.14393 6.35571 6.96217 7.05636 7.33055 7.73465 8.38152 9.22785 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.002886 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.077219 B = 9698.728200 C =10606.506190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.087 0.913 4 C 0.134 3.866 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.982 3.018 11 H -0.286 1.286 12 H -0.298 1.298 13 H -0.263 1.263 14 C 0.187 3.813 15 C 0.133 3.867 16 H 0.085 0.915 17 N -0.683 5.683 18 C 0.575 3.425 19 O -0.564 6.564 20 C -0.026 4.026 21 C -0.028 4.028 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.081 4.081 25 C -0.069 4.069 26 C -0.099 4.099 27 C 0.052 3.948 28 N -0.223 5.223 29 N -0.213 5.213 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.244 0.756 36 H 0.016 0.984 37 H -0.006 1.006 38 H 0.415 0.585 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.178 0.822 42 H 0.179 0.821 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 10.378 21.181 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.116 4.116 3 H 0.105 0.895 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.601 5.601 10 Si 0.809 3.191 11 H -0.213 1.213 12 H -0.225 1.225 13 H -0.187 1.187 14 C 0.061 3.939 15 C 0.028 3.972 16 H 0.103 0.897 17 N -0.332 5.332 18 C 0.359 3.641 19 O -0.443 6.443 20 C -0.160 4.160 21 C -0.058 4.058 22 C -0.092 4.092 23 C -0.121 4.121 24 C -0.101 4.101 25 C -0.090 4.090 26 C -0.120 4.120 27 C -0.076 4.076 28 N -0.079 5.079 29 N -0.071 5.071 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.034 0.966 37 H 0.012 0.988 38 H 0.253 0.747 39 H 0.193 0.807 40 H 0.182 0.818 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.432 10.629 20.171 25.506 hybrid contribution 1.271 -1.283 0.025 1.806 sum -10.161 9.347 20.196 24.464 Atomic orbital electron populations 1.21647 0.91533 1.02441 1.02958 1.22566 0.97487 0.98858 0.92702 0.89476 1.21876 0.85153 0.95867 0.96193 1.44757 1.09829 1.79062 1.01793 1.19529 0.88229 1.39224 0.90017 0.89217 1.25774 1.00636 1.02462 0.97481 1.70255 1.22371 1.55985 1.11528 0.85009 0.78906 0.76906 0.78236 1.21333 1.22474 1.18696 1.21111 0.92400 0.96624 0.83811 1.22231 0.97007 0.93647 0.84362 0.89665 1.45668 1.71010 1.12019 1.04492 1.17814 0.76492 0.86559 0.83192 1.90770 1.51674 1.15330 1.86514 1.22270 1.05801 0.93034 0.94866 1.22792 0.89842 1.02816 0.90379 1.19088 1.00616 0.93091 0.96391 1.21421 0.98839 1.02726 0.89066 1.21692 0.94337 0.92760 1.01272 1.21662 0.93647 0.96746 0.96899 1.21108 0.99782 1.00474 0.90590 1.20925 0.98834 0.93391 0.94406 1.73742 1.09492 1.27557 0.97089 1.73100 1.06640 1.01600 1.25744 0.91818 0.90172 0.92533 0.95117 0.92426 0.94689 0.96582 0.98793 0.74727 0.80659 0.81820 0.80487 0.80354 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.29 71.99 0.67 -2.60 16 2 C -0.10 -3.29 3.26 -9.40 -0.03 -3.32 16 3 H 0.09 2.88 8.01 -2.39 -0.02 2.86 16 4 C 0.13 5.50 6.71 86.83 0.58 6.08 16 5 N -0.63 -33.83 3.40 -691.71 -2.35 -36.18 16 6 C -0.24 -14.01 10.27 84.03 0.86 -13.15 16 7 H 0.09 4.89 7.84 -2.91 -0.02 4.87 16 8 C -0.07 -4.23 5.48 84.86 0.46 -3.76 16 9 N -0.95 -61.13 10.36 21.65 0.22 -60.91 16 10 Si 0.98 47.65 29.56 68.60 2.03 49.67 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 14 C 0.19 10.13 5.13 86.73 0.45 10.58 16 15 C 0.13 5.49 2.79 46.18 0.13 5.62 16 16 H 0.09 3.64 7.45 -2.39 -0.02 3.62 16 17 N -0.68 -25.65 5.09 -439.70 -2.24 -27.89 16 18 C 0.58 22.19 7.80 86.81 0.68 22.87 16 19 O -0.56 -24.83 16.00 -3.87 -0.06 -24.89 16 20 C -0.03 -0.86 6.82 41.62 0.28 -0.58 16 21 C -0.03 -0.76 9.51 23.02 0.22 -0.54 16 22 C -0.08 -1.79 5.75 -21.28 -0.12 -1.91 16 23 C -0.10 -1.26 9.81 22.30 0.22 -1.04 16 24 C -0.08 -0.54 9.96 22.07 0.22 -0.32 16 25 C -0.07 -0.50 9.94 22.06 0.22 -0.28 16 26 C -0.10 -1.42 10.00 22.31 0.22 -1.20 16 27 C 0.05 1.21 6.69 40.28 0.27 1.48 16 28 N -0.22 -6.61 11.55 -51.93 -0.60 -7.21 16 29 N -0.21 -7.01 10.70 -48.75 -0.52 -7.53 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 33 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.02 0.97 7.18 -2.39 -0.02 0.95 16 37 H -0.01 -0.39 7.61 -2.39 -0.02 -0.41 16 38 H 0.42 14.21 7.89 -92.70 -0.73 13.48 16 39 H 0.18 4.13 7.69 -2.91 -0.02 4.10 16 40 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 42 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 43 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -82.54 361.96 2.12 -80.42 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.31 Total: 16.60 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 5.33 Total: 17.92 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -5.49 Total: -139.72 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.06 Total: -24.89 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -82.54 2.12 -80.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080235866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.201 kcal (2) G-P(sol) polarization free energy of solvation -82.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds