Wall clock time and date at job start Tue Mar 31 2020 14:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99784 * 2 1 4 4 C 1.54337 * 109.98926 * 238.95930 * 2 1 3 5 5 H 1.08998 * 110.66799 * 337.05065 * 4 2 1 6 6 N 1.46503 * 110.84802 * 100.20020 * 4 2 1 7 7 C 1.34779 * 119.99908 * 200.14679 * 6 4 2 8 8 O 1.21541 * 119.99976 * 359.97438 * 7 6 4 9 9 C 1.47895 * 119.99639 * 179.97438 * 7 6 4 10 10 N 1.32135 * 120.03821 * 359.73012 * 9 7 6 11 11 C 1.31974 * 122.77192 * 179.69765 * 10 9 7 12 12 C 1.37775 * 121.73016 * 0.57989 * 11 10 9 13 13 C 1.40392 * 118.72637 * 359.71795 * 12 11 10 14 14 C 1.40637 * 122.27848 * 179.97438 * 13 12 11 15 15 C 1.36646 * 117.95413 * 180.02562 * 14 13 12 16 16 C 1.39403 * 119.92062 * 359.97438 * 15 14 13 17 17 N 1.31209 * 121.85568 * 0.02562 * 16 15 14 18 18 C 1.33258 * 121.22081 * 0.02562 * 17 16 15 19 19 C 1.55155 * 103.01999 * 218.66603 * 4 2 1 20 20 C 1.54906 * 101.58202 * 35.31209 * 19 4 2 21 21 N 1.47018 * 109.88134 * 121.09861 * 2 1 3 22 22 C 1.36935 * 125.64732 * 298.39226 * 21 2 1 23 23 H 1.08005 * 119.99877 * 359.71120 * 22 21 2 24 24 C 1.38811 * 120.00369 * 179.44633 * 22 21 2 25 25 N 1.31617 * 119.99773 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47045 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47426 * 119.99572 * 26 24 22 29 29 H 1.48501 * 109.46833 * 239.99815 * 26 24 22 30 30 H 1.09003 * 109.47492 * 300.36087 * 1 2 3 31 31 H 1.09006 * 109.47327 * 60.35581 * 1 2 3 32 32 H 1.09002 * 109.47636 * 180.35673 * 1 2 3 33 33 H 0.97000 * 119.99733 * 20.14706 * 6 4 2 34 34 H 1.07997 * 119.13732 * 180.29992 * 11 10 9 35 35 H 1.08001 * 120.64305 * 179.74546 * 12 11 10 36 36 H 1.08001 * 121.02587 * 0.02562 * 14 13 12 37 37 H 1.07993 * 120.04137 * 179.97438 * 15 14 13 38 38 H 1.07999 * 119.07131 * 179.97438 * 16 15 14 39 39 H 1.08996 * 111.00485 * 277.23437 * 19 4 2 40 40 H 1.09005 * 110.99829 * 153.38425 * 19 4 2 41 41 H 1.09004 * 110.36614 * 204.15475 * 20 19 4 42 42 H 1.08999 * 110.37158 * 81.82525 * 20 19 4 43 43 H 0.97004 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3065 -1.4406 -1.6225 6 7 2.4636 0.1967 -2.2863 7 6 2.5637 -0.2148 -3.5658 8 8 2.3176 -1.3697 -3.8538 9 6 2.9731 0.7389 -4.6194 10 7 3.2358 1.9959 -4.3080 11 6 3.6106 2.8903 -5.2031 12 6 3.7424 2.5698 -6.5365 13 6 3.4744 1.2532 -6.9437 14 6 3.5847 0.8447 -8.2849 15 6 3.3021 -0.4586 -8.5828 16 6 2.9190 -1.3362 -7.5697 17 7 2.8178 -0.9493 -6.3200 18 6 3.0783 0.3078 -5.9629 19 6 3.2862 -1.5184 -0.6914 20 6 2.8098 -1.8826 0.7368 21 7 2.0299 -0.7141 1.1839 22 6 1.8037 -0.3565 2.4862 23 1 1.2162 0.5215 2.7108 24 6 2.3249 -1.1253 3.5177 25 7 3.0361 -2.1985 3.2440 26 14 2.0158 -0.6379 5.2943 27 1 1.1935 0.5981 5.3325 28 1 1.2951 -1.7340 5.9901 29 1 3.3134 -0.3899 5.9724 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0064 33 1 2.6604 1.1183 -2.0564 34 1 3.8152 3.9012 -4.8826 35 1 4.0465 3.3168 -7.2548 36 1 3.8835 1.5396 -9.0557 37 1 3.3754 -0.8084 -9.6019 38 1 2.6984 -2.3632 -7.8206 39 1 4.1668 -0.8770 -0.6579 40 1 3.4805 -2.4157 -1.2792 41 1 3.6654 -2.0412 1.3932 42 1 2.1799 -2.7718 0.7115 43 1 3.4000 -2.7361 3.9648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088630270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:24 Heat of formation + Delta-G solvation = 71.614011 kcal Electronic energy + Delta-G solvation = -26980.770879 eV Core-core repulsion = 23220.220232 eV Total energy + Delta-G solvation = -3760.550647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56340 -39.40201 -38.25378 -37.35656 -33.99910 -33.91693 -32.09144 -31.68533 -30.76795 -30.25943 -28.52560 -25.93482 -24.75383 -24.38421 -23.93414 -23.24068 -20.81291 -20.03982 -19.74345 -18.89699 -17.83094 -17.70837 -16.69379 -16.40642 -15.80806 -15.41499 -15.11495 -14.69576 -14.60840 -14.26972 -14.13304 -13.82718 -13.57389 -13.44536 -13.18284 -12.91779 -12.67212 -12.54419 -12.06591 -11.89652 -11.48941 -11.12001 -11.06151 -10.81748 -10.78501 -10.44538 -10.36502 -10.23092 -10.04097 -10.00845 -9.69056 -9.67620 -9.52475 -9.26710 -8.79919 -8.61389 -8.44374 -6.81277 -5.60384 -3.02688 -0.35929 0.35386 1.35795 2.48379 3.16792 3.19111 3.42942 3.48280 3.50812 3.85933 3.90010 3.97658 4.13442 4.27567 4.40086 4.44979 4.53956 4.78276 4.99577 5.06701 5.19945 5.27551 5.40284 5.48559 5.52125 5.63223 5.70690 5.72116 5.90437 5.96206 6.21442 6.22481 6.34342 6.40828 6.44551 6.62837 6.70867 6.81497 6.94772 7.19762 7.34430 7.58860 7.61822 7.68640 7.90473 7.91852 8.40171 8.51619 9.26044 9.86987 10.51452 11.43233 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002640 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.780591 B =10602.232920 C =11076.877001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.038 0.962 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.697 5.697 7 C 0.561 3.439 8 O -0.496 6.496 9 C 0.149 3.851 10 N -0.443 5.443 11 C 0.077 3.923 12 C -0.127 4.127 13 C -0.084 4.084 14 C -0.065 4.065 15 C -0.155 4.155 16 C 0.130 3.870 17 N -0.418 5.418 18 C 0.105 3.895 19 C -0.153 4.153 20 C 0.154 3.846 21 N -0.595 5.595 22 C -0.217 4.217 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.913 3.087 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.406 0.594 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.015 0.985 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 8.999 -25.833 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.032 3.968 5 H 0.110 0.890 6 N -0.349 5.349 7 C 0.343 3.657 8 O -0.369 6.369 9 C -0.004 4.004 10 N -0.156 5.156 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.092 4.092 14 C -0.091 4.091 15 C -0.176 4.176 16 C -0.044 4.044 17 N -0.125 5.125 18 C -0.020 4.020 19 C -0.192 4.192 20 C 0.029 3.971 21 N -0.321 5.321 22 C -0.345 4.345 23 H 0.096 0.904 24 C -0.207 4.207 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.242 0.758 34 H 0.184 0.816 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.033 0.967 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.686 7.910 -24.179 25.496 hybrid contribution 0.266 1.130 -0.663 1.337 sum 1.951 9.040 -24.842 26.508 Atomic orbital electron populations 1.22237 0.97866 1.01375 0.99964 1.20982 0.92544 0.94913 0.86814 0.94473 1.22181 0.97638 0.90724 0.86304 0.88972 1.45939 1.67794 1.14764 1.06355 1.17535 0.79346 0.86767 0.82041 1.90858 1.47732 1.16905 1.81358 1.21680 0.96412 0.90896 0.91405 1.67389 1.08655 1.01184 1.38392 1.22610 0.96292 0.99050 0.88961 1.22375 0.99227 0.95262 0.97917 1.18980 1.00271 0.95010 0.94902 1.21410 0.96539 0.96680 0.94512 1.22138 0.99531 0.94380 1.01599 1.23364 0.92768 1.00605 0.87656 1.68339 1.10860 1.14629 1.18699 1.19499 0.98433 0.90415 0.93632 1.23403 0.96780 0.99360 0.99693 1.21934 0.97315 0.88317 0.89543 1.44506 1.59419 1.28063 1.00063 1.19074 1.27224 1.07735 0.80512 0.90409 1.24786 1.00592 0.97350 0.97997 1.69819 1.39792 1.17376 1.29965 0.86012 0.77311 0.77488 0.84766 1.20572 1.21831 1.21821 0.92690 0.94320 0.92932 0.75826 0.81598 0.83655 0.83768 0.83919 0.81714 0.91989 0.91868 0.87417 0.96733 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.14 37.16 0.34 -2.66 16 2 C 0.16 3.27 3.48 -66.95 -0.23 3.03 16 3 H 0.04 0.77 7.69 -51.93 -0.40 0.37 16 4 C 0.14 2.65 2.76 -66.09 -0.18 2.47 16 5 H 0.09 1.89 7.40 -51.93 -0.38 1.51 16 6 N -0.70 -11.88 5.20 -52.95 -0.28 -12.16 16 7 C 0.56 9.88 7.81 -12.31 -0.10 9.78 16 8 O -0.50 -10.11 14.94 5.33 0.08 -10.03 16 9 C 0.15 2.24 6.81 -82.55 -0.56 1.68 16 10 N -0.44 -5.67 9.48 -9.55 -0.09 -5.76 16 11 C 0.08 0.70 11.12 -17.66 -0.20 0.51 16 12 C -0.13 -0.98 9.93 -38.94 -0.39 -1.37 16 13 C -0.08 -0.84 5.75 -106.79 -0.61 -1.46 16 14 C -0.07 -0.45 9.94 -39.25 -0.39 -0.84 16 15 C -0.16 -1.03 10.03 -39.72 -0.40 -1.43 16 16 C 0.13 1.25 11.14 -17.38 -0.19 1.06 16 17 N -0.42 -5.98 8.49 -10.74 -0.09 -6.07 16 18 C 0.11 1.45 6.61 -84.62 -0.56 0.89 16 19 C -0.15 -3.21 6.77 -24.59 -0.17 -3.38 16 20 C 0.15 3.86 5.88 -2.53 -0.01 3.85 16 21 N -0.60 -15.22 3.13 -162.57 -0.51 -15.73 16 22 C -0.22 -6.01 9.87 -15.06 -0.15 -6.15 16 23 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 24 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 25 N -0.92 -27.07 10.09 55.49 0.56 -26.51 16 26 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.05 1.09 8.02 -51.93 -0.42 0.67 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.41 6.30 7.66 -40.82 -0.31 5.99 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.11 3.01 5.89 -51.93 -0.31 2.71 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -34.61 358.55 -9.44 -44.04 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.59 Total: 4.07 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -3.90 Total: 5.55 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: -0.41 Total: -66.23 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.61 -9.44 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088630270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.658 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds