Wall clock time and date at job start Tue Mar 31 2020 14:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.86840 * 2 1 4 4 C 1.54323 * 109.88262 * 238.83149 * 2 1 3 5 5 H 1.09002 * 110.71821 * 336.74473 * 4 2 1 6 6 N 1.46501 * 110.72309 * 100.02349 * 4 2 1 7 7 C 1.34772 * 119.99759 * 204.99724 * 6 4 2 8 8 O 1.21541 * 120.00332 * 359.97438 * 7 6 4 9 9 C 1.47917 * 119.99967 * 180.02562 * 7 6 4 10 10 N 1.32381 * 120.63332 * 354.80201 * 9 7 6 11 11 N 1.28087 * 123.17857 * 179.97438 * 10 9 7 12 12 C 1.31791 * 123.49972 * 359.97438 * 11 10 9 13 13 C 1.40404 * 119.13927 * 0.02562 * 12 11 10 14 14 C 1.40228 * 122.74040 * 179.97438 * 13 12 11 15 15 C 1.36252 * 119.37190 * 180.02562 * 14 13 12 16 16 C 1.39380 * 121.07303 * 359.97438 * 15 14 13 17 17 C 1.36364 * 121.09103 * 0.02562 * 16 15 14 18 18 C 1.39835 * 119.41449 * 359.74778 * 17 16 15 19 19 C 1.55158 * 102.93907 * 218.38734 * 4 2 1 20 20 C 1.54906 * 101.58378 * 35.49945 * 19 4 2 21 21 N 1.47018 * 109.88404 * 121.01605 * 2 1 3 22 22 C 1.36939 * 125.65027 * 298.32558 * 21 2 1 23 23 H 1.07999 * 119.99670 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00251 * 179.97438 * 22 21 2 25 25 N 1.31627 * 119.99556 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47014 * 89.99950 * 26 24 22 28 28 H 1.48502 * 109.47234 * 210.00172 * 26 24 22 29 29 H 1.48503 * 109.46843 * 330.00275 * 26 24 22 30 30 H 1.08998 * 109.47642 * 300.43246 * 1 2 3 31 31 H 1.09000 * 109.47653 * 60.43995 * 1 2 3 32 32 H 1.09006 * 109.46736 * 180.43374 * 1 2 3 33 33 H 0.96998 * 119.99757 * 24.99965 * 6 4 2 34 34 H 1.08002 * 120.43196 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.31670 * 0.02562 * 14 13 12 36 36 H 1.08002 * 119.46795 * 180.02562 * 15 14 13 37 37 H 1.08004 * 119.45644 * 180.02562 * 16 15 14 38 38 H 1.07997 * 120.29600 * 180.02562 * 17 16 15 39 39 H 1.09000 * 111.00295 * 277.42843 * 19 4 2 40 40 H 1.08998 * 111.04070 * 153.58822 * 19 4 2 41 41 H 1.08997 * 110.37061 * 204.15718 * 20 19 4 42 42 H 1.08996 * 110.46377 * 81.87677 * 20 19 4 43 43 H 0.97001 * 119.99538 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7511 -1.2417 5 1 1.3051 -1.4481 -1.6163 6 7 2.4554 0.1931 -2.2878 7 6 2.4581 -0.1931 -3.5790 8 8 2.1287 -1.3248 -3.8756 9 6 2.8631 0.7601 -4.6352 10 7 3.1265 2.0231 -4.3390 11 7 3.4813 2.8889 -5.2138 12 6 3.6209 2.6134 -6.4950 13 6 3.3716 1.3068 -6.9444 14 6 3.4963 0.9307 -8.2895 15 6 3.2366 -0.3573 -8.6502 16 6 2.8501 -1.3052 -7.7043 17 6 2.7191 -0.9738 -6.3881 18 6 2.9821 0.3378 -5.9806 19 6 3.2876 -1.5150 -0.6904 20 6 2.8146 -1.8783 0.7393 21 7 2.0300 -0.7124 1.1849 22 6 1.8050 -0.3522 2.4867 23 1 1.2141 0.5238 2.7102 24 6 2.3353 -1.1135 3.5192 25 7 3.0550 -2.1815 3.2467 26 14 2.0277 -0.6226 5.2950 27 1 0.7871 -1.2778 5.7819 28 1 3.1760 -1.0518 6.1332 29 1 1.8755 0.8520 5.3816 30 1 -0.3634 0.5205 0.8860 31 1 -0.3634 0.5070 -0.8939 32 1 -0.3633 -1.0277 0.0078 33 1 2.7187 1.0962 -2.0511 34 1 3.9233 3.3826 -7.1902 35 1 3.7953 1.6551 -9.0327 36 1 3.3325 -0.6487 -9.6857 37 1 2.6512 -2.3190 -8.0190 38 1 2.4193 -1.7187 -5.6659 39 1 4.1654 -0.8695 -0.6592 40 1 3.4859 -2.4126 -1.2761 41 1 3.6716 -2.0317 1.3950 42 1 2.1892 -2.7708 0.7185 43 1 3.4252 -2.7137 3.9682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088736811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:21 Heat of formation + Delta-G solvation = 75.695529 kcal Electronic energy + Delta-G solvation = -26982.997924 eV Core-core repulsion = 23222.624265 eV Total energy + Delta-G solvation = -3760.373659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77750 -39.61655 -38.35906 -37.61900 -34.19419 -33.67766 -32.13108 -32.07049 -30.71399 -30.35315 -28.65247 -26.27358 -24.60277 -24.59306 -23.98692 -23.05662 -21.20622 -20.24744 -19.82269 -18.75587 -18.41355 -17.50282 -16.81785 -16.36473 -16.00794 -15.70893 -15.05332 -14.88030 -14.69633 -14.37155 -14.24502 -13.98717 -13.76042 -13.34260 -12.93073 -12.78964 -12.67879 -12.14566 -12.02237 -11.93118 -11.70289 -11.55666 -11.13971 -10.92601 -10.84803 -10.81175 -10.59904 -10.42814 -10.09031 -10.03101 -9.76788 -9.74285 -9.71455 -9.55804 -8.91347 -8.69365 -8.62631 -6.87097 -5.64976 -3.07603 -0.36302 0.24910 1.25384 2.36025 2.91324 2.95750 3.40938 3.46037 3.47843 3.63755 3.67798 4.00234 4.13922 4.25821 4.35148 4.49726 4.66431 4.74472 4.84187 5.10923 5.24097 5.29305 5.39040 5.42064 5.51988 5.56747 5.61537 5.78716 5.82231 5.97271 6.00741 6.13783 6.22014 6.28763 6.32940 6.39434 6.50551 6.59913 6.68673 6.86028 7.07853 7.49383 7.57180 7.63424 7.85107 8.14170 8.35388 8.42030 9.21252 9.81998 10.45483 11.38573 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.002630 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.977743 B =10642.815609 C =11118.945363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.039 0.961 4 C 0.131 3.869 5 H 0.099 0.901 6 N -0.685 5.685 7 C 0.576 3.424 8 O -0.530 6.530 9 C 0.074 3.926 10 N -0.229 5.229 11 N -0.263 5.263 12 C 0.099 3.901 13 C -0.086 4.086 14 C -0.098 4.098 15 C -0.095 4.095 16 C -0.103 4.103 17 C -0.088 4.088 18 C -0.048 4.048 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.219 4.219 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.411 0.589 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.176 0.824 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.016 0.984 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 4.990 -25.396 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.057 0.943 4 C 0.027 3.973 5 H 0.116 0.884 6 N -0.334 5.334 7 C 0.359 3.641 8 O -0.407 6.407 9 C -0.083 4.083 10 N -0.066 5.066 11 N -0.095 5.095 12 C -0.075 4.075 13 C -0.094 4.094 14 C -0.118 4.118 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.055 4.055 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.347 4.347 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.745 3.255 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.247 0.753 34 H 0.198 0.802 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.193 0.807 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.122 5.342 -24.029 24.641 hybrid contribution -0.144 -0.321 -0.275 0.446 sum 0.978 5.021 -24.304 24.836 Atomic orbital electron populations 1.22243 0.97766 1.01391 1.00092 1.21002 0.92701 0.94986 0.86687 0.94310 1.22321 0.98019 0.90746 0.86213 0.88353 1.45990 1.65076 1.17046 1.05279 1.17404 0.78488 0.85933 0.82300 1.90612 1.49217 1.19408 1.81440 1.23091 0.97895 0.94000 0.93350 1.72762 1.06697 0.99330 1.27778 1.72656 1.10370 1.25976 1.00512 1.24825 0.92785 0.94896 0.95018 1.18921 1.00807 0.94456 0.95182 1.20936 0.99914 0.97221 0.93749 1.21177 0.96834 0.93145 1.00314 1.21298 0.97615 1.00274 0.93068 1.22088 0.95279 0.95730 0.97623 1.18632 0.98943 0.95616 0.92334 1.23428 0.96662 0.99300 0.99912 1.21951 0.97449 0.88412 0.89374 1.44481 1.59257 1.28216 1.00052 1.19031 1.27078 1.08141 0.80460 0.90403 1.24785 1.00368 0.97411 0.98056 1.69792 1.39191 1.17898 1.30139 0.86074 0.77214 0.77761 0.84451 1.21665 1.21689 1.20693 0.92574 0.94301 0.92911 0.75268 0.80238 0.84206 0.84932 0.84742 0.80672 0.91798 0.91838 0.87253 0.96647 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.15 3.14 3.48 -66.96 -0.23 2.90 16 3 H 0.04 0.79 7.72 -51.93 -0.40 0.39 16 4 C 0.13 2.39 2.84 -66.10 -0.19 2.20 16 5 H 0.10 1.86 7.26 -51.93 -0.38 1.48 16 6 N -0.68 -10.89 5.17 -52.95 -0.27 -11.16 16 7 C 0.58 9.04 7.79 -12.30 -0.10 8.94 16 8 O -0.53 -9.00 13.23 5.33 0.07 -8.93 16 9 C 0.07 1.06 6.90 -82.42 -0.57 0.49 16 10 N -0.23 -3.32 10.70 33.56 0.36 -2.96 16 11 N -0.26 -3.41 11.41 30.90 0.35 -3.06 16 12 C 0.10 0.92 11.20 -16.75 -0.19 0.74 16 13 C -0.09 -0.84 5.75 -106.85 -0.61 -1.45 16 14 C -0.10 -0.65 9.84 -39.55 -0.39 -1.04 16 15 C -0.10 -0.59 9.95 -39.87 -0.40 -0.99 16 16 C -0.10 -0.82 9.95 -39.83 -0.40 -1.21 16 17 C -0.09 -0.98 9.27 -39.66 -0.37 -1.35 16 18 C -0.05 -0.59 5.77 -106.57 -0.61 -1.20 16 19 C -0.15 -3.02 6.77 -24.58 -0.17 -3.18 16 20 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 21 N -0.59 -14.81 3.13 -162.58 -0.51 -15.32 16 22 C -0.22 -5.96 9.87 -15.06 -0.15 -6.11 16 23 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 26 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 6.17 7.76 -40.82 -0.32 5.85 16 34 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.18 2.21 5.12 -52.49 -0.27 1.94 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.11 2.97 5.87 -51.93 -0.31 2.66 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -31.90 355.33 -8.68 -40.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.44 Total: 5.16 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.14 Total: -0.55 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.49 Total: -58.56 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.90 -8.68 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088736811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.280 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds