Wall clock time and date at job start Tue Mar 31 2020 14:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.99731 * 2 1 4 4 C 1.54321 * 109.88540 * 238.90531 * 2 1 3 5 5 H 1.09008 * 110.86506 * 336.82259 * 4 2 1 6 6 N 1.46496 * 110.72405 * 100.02126 * 4 2 1 7 7 C 1.34777 * 120.00262 * 199.98219 * 6 4 2 8 8 O 1.21552 * 119.99899 * 0.27243 * 7 6 4 9 9 C 1.47866 * 119.99820 * 180.02562 * 7 6 4 10 10 C 1.40632 * 120.26010 * 359.71793 * 9 7 6 11 11 N 1.30855 * 121.65427 * 179.71589 * 10 9 7 12 12 C 1.33596 * 121.58740 * 0.59413 * 11 10 9 13 13 C 1.40630 * 121.63470 * 179.68652 * 12 11 10 14 14 N 1.31153 * 120.04503 * 180.02562 * 13 12 11 15 15 C 1.32495 * 122.88342 * 359.97438 * 14 13 12 16 16 C 1.36314 * 121.71487 * 0.02562 * 15 14 13 17 17 C 1.40596 * 118.64952 * 359.97438 * 16 15 14 18 18 C 1.38995 * 120.25828 * 179.97438 * 9 7 6 19 19 C 1.55156 * 102.94521 * 218.39034 * 4 2 1 20 20 C 1.54918 * 101.57973 * 35.50006 * 19 4 2 21 21 N 1.47024 * 109.88222 * 121.09298 * 2 1 3 22 22 C 1.36939 * 125.65231 * 298.32204 * 21 2 1 23 23 H 1.07994 * 119.99548 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00061 * 180.02562 * 22 21 2 25 25 N 1.31626 * 119.99962 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99977 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47073 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47108 * 119.99919 * 26 24 22 29 29 H 1.48505 * 109.47311 * 240.00314 * 26 24 22 30 30 H 1.08999 * 109.47412 * 181.09782 * 1 2 3 31 31 H 1.09010 * 109.47042 * 301.09472 * 1 2 3 32 32 H 1.08999 * 109.47527 * 61.09603 * 1 2 3 33 33 H 0.96999 * 119.99694 * 19.98338 * 6 4 2 34 34 H 1.07989 * 119.17446 * 0.02583 * 10 9 7 35 35 H 1.08005 * 119.97792 * 359.97438 * 13 12 11 36 36 H 1.08008 * 119.14022 * 179.97438 * 15 14 13 37 37 H 1.08005 * 120.67005 * 179.97438 * 16 15 14 38 38 H 1.07996 * 121.11004 * 359.94953 * 18 9 7 39 39 H 1.09001 * 111.00644 * 153.57222 * 19 4 2 40 40 H 1.08992 * 111.00381 * 277.39015 * 19 4 2 41 41 H 1.08996 * 110.36806 * 81.83021 * 20 19 4 42 42 H 1.08995 * 110.36083 * 204.15274 * 20 19 4 43 43 H 0.96996 * 119.99512 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3064 -1.4458 -1.6210 6 7 2.4554 0.1960 -2.2875 7 6 2.5558 -0.2160 -3.5668 8 8 2.3091 -1.3709 -3.8545 9 6 2.9606 0.7383 -4.6213 10 6 3.2365 2.0785 -4.2963 11 7 3.6021 2.9446 -5.2065 12 6 3.7201 2.6009 -6.4921 13 6 4.1066 3.5325 -7.4721 14 7 4.2121 3.1613 -8.7256 15 6 3.9690 1.9240 -9.1323 16 6 3.5883 0.9456 -8.2629 17 6 3.4538 1.2689 -6.9012 18 6 3.0663 0.3191 -5.9423 19 6 3.2876 -1.5142 -0.6924 20 6 2.8145 -1.8794 0.7368 21 7 2.0300 -0.7140 1.1840 22 6 1.8050 -0.3556 2.4863 23 1 1.2142 0.5201 2.7109 24 6 2.3362 -1.1178 3.5177 25 7 3.0566 -2.1848 3.2438 26 14 2.0287 -0.6292 5.2942 27 1 1.1959 0.5998 5.3325 28 1 1.3198 -1.7301 5.9947 29 1 3.3263 -0.3684 5.9676 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3634 0.5308 0.8801 32 1 -0.3634 0.4967 -0.8996 33 1 2.6484 1.1186 -2.0586 34 1 3.1491 2.3997 -3.2690 35 1 4.3159 4.5545 -7.1925 36 1 4.0744 1.6846 -10.1803 37 1 3.3939 -0.0575 -8.6129 38 1 2.8575 -0.7030 -6.2217 39 1 3.4852 -2.4110 -1.2796 40 1 4.1655 -0.8690 -0.6610 41 1 2.1886 -2.7714 0.7129 42 1 3.6716 -2.0338 1.3922 43 1 3.4275 -2.7176 3.9645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088746733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:30 Heat of formation + Delta-G solvation = 62.021818 kcal Electronic energy + Delta-G solvation = -26543.188747 eV Core-core repulsion = 22782.222151 eV Total energy + Delta-G solvation = -3760.966596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64998 -39.93879 -38.30339 -37.51489 -34.35997 -34.04465 -32.49070 -31.62922 -30.81738 -30.43249 -28.71956 -26.13715 -24.95062 -24.36039 -24.03895 -22.98400 -21.44031 -20.31213 -19.98065 -18.84856 -18.20429 -17.77620 -16.82569 -16.57695 -15.96952 -15.44342 -15.40582 -14.84654 -14.67691 -14.61865 -14.26358 -14.05121 -13.63281 -13.56709 -13.40479 -13.05099 -12.88107 -12.80894 -12.20061 -12.07942 -11.64067 -11.24679 -11.19834 -10.91502 -10.90991 -10.62642 -10.60437 -10.37212 -10.16233 -10.10495 -9.83891 -9.74327 -9.72379 -9.61307 -8.93486 -8.79865 -8.69429 -6.93266 -5.70506 -3.13688 -0.35229 0.05813 1.32626 2.21425 3.01217 3.05707 3.36396 3.42054 3.44446 3.62815 3.65418 3.93179 4.01823 4.20331 4.24976 4.32052 4.44454 4.62556 4.78542 5.00907 5.09778 5.19063 5.28208 5.36117 5.45036 5.46587 5.55418 5.61513 5.73171 5.86561 6.04418 6.07297 6.14716 6.21964 6.26287 6.44147 6.51479 6.64024 6.78676 7.00691 7.20394 7.43499 7.47848 7.51221 7.57921 7.79932 8.11887 8.29847 9.15417 9.76237 10.39276 11.32896 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030433 B = 0.002329 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.839058 B =12019.879307 C =12360.035053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.135 3.865 5 H 0.095 0.905 6 N -0.705 5.705 7 C 0.560 3.440 8 O -0.532 6.532 9 C -0.167 4.167 10 C 0.162 3.838 11 N -0.456 5.456 12 C 0.081 3.919 13 C 0.163 3.837 14 N -0.469 5.469 15 C 0.071 3.929 16 C -0.132 4.132 17 C -0.087 4.087 18 C 0.006 3.994 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.221 4.221 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.398 0.602 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.110 0.890 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 7.941 -21.439 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.113 0.887 6 N -0.356 5.356 7 C 0.345 3.655 8 O -0.409 6.409 9 C -0.173 4.173 10 C -0.013 4.013 11 N -0.164 5.164 12 C -0.043 4.043 13 C -0.010 4.010 14 N -0.178 5.178 15 C -0.071 4.071 16 C -0.153 4.153 17 C -0.094 4.094 18 C -0.021 4.021 19 C -0.193 4.193 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.097 0.903 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.233 0.767 34 H 0.186 0.814 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.128 0.872 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.438 8.439 -22.007 23.613 hybrid contribution -0.585 -0.914 1.495 1.847 sum 0.854 7.525 -20.512 21.865 Atomic orbital electron populations 1.22252 0.97757 1.01538 1.00018 1.20985 0.92685 0.94796 0.86810 0.94542 1.22249 0.97874 0.90664 0.86160 0.88725 1.46019 1.68429 1.14264 1.06842 1.17883 0.78065 0.87204 0.82358 1.90795 1.49768 1.18316 1.82059 1.21227 1.04863 0.95960 0.95282 1.23228 0.90674 0.88005 0.99386 1.67901 1.12379 1.35977 1.00180 1.20069 0.99074 0.92587 0.92547 1.23164 0.92261 0.99396 0.86197 1.67470 1.13011 1.19512 1.17823 1.22317 0.96181 0.87965 1.00647 1.22011 0.99686 1.01726 0.91875 1.18959 1.00623 0.94520 0.95252 1.21944 0.89630 0.99891 0.90632 1.23415 0.96613 0.99398 0.99842 1.21966 0.97446 0.88413 0.89451 1.44494 1.59247 1.28211 1.00049 1.19062 1.27173 1.08213 0.80418 0.90346 1.24797 1.00314 0.97371 0.98114 1.69801 1.39074 1.17876 1.30114 0.86004 0.77372 0.77552 0.84578 1.20523 1.21761 1.21740 0.92853 0.92587 0.94302 0.76657 0.81429 0.80795 0.82214 0.83662 0.82330 0.91853 0.91884 0.96672 0.87229 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.14 37.16 0.34 -2.40 16 2 C 0.16 2.93 3.48 -66.96 -0.23 2.70 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 4 C 0.13 2.28 2.76 -66.10 -0.18 2.10 16 5 H 0.09 1.72 7.40 -51.92 -0.38 1.34 16 6 N -0.71 -9.40 5.16 -52.97 -0.27 -9.68 16 7 C 0.56 7.66 7.78 -12.32 -0.10 7.56 16 8 O -0.53 -9.05 16.11 5.32 0.09 -8.97 16 9 C -0.17 -1.84 5.89 -104.77 -0.62 -2.46 16 10 C 0.16 1.59 10.68 -17.07 -0.18 1.41 16 11 N -0.46 -4.86 10.33 -10.65 -0.11 -4.97 16 12 C 0.08 0.83 6.62 -84.81 -0.56 0.27 16 13 C 0.16 1.49 11.25 -16.94 -0.19 1.30 16 14 N -0.47 -4.38 10.28 -13.11 -0.13 -4.52 16 15 C 0.07 0.54 11.08 -17.96 -0.20 0.34 16 16 C -0.13 -0.98 9.88 -39.39 -0.39 -1.37 16 17 C -0.09 -0.84 5.75 -106.80 -0.61 -1.45 16 18 C 0.01 0.06 9.51 -38.48 -0.37 -0.31 16 19 C -0.15 -2.89 6.77 -24.58 -0.17 -3.06 16 20 C 0.15 3.58 5.89 -2.52 -0.01 3.56 16 21 N -0.59 -14.24 3.13 -162.57 -0.51 -14.75 16 22 C -0.22 -5.81 9.89 -15.06 -0.15 -5.96 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 25 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 26 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.02 8.05 -51.92 -0.42 0.60 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 4.23 6.34 -40.82 -0.26 3.97 16 34 H 0.17 1.23 6.37 -52.49 -0.33 0.89 16 35 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.16 1.45 7.71 -52.49 -0.40 1.05 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -32.07 358.24 -9.15 -41.23 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.43 Total: 3.47 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -3.72 Total: 1.86 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.47 Total: -59.43 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.07 -9.15 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088746733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.248 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds