Wall clock time and date at job start Tue Mar 31 2020 14:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.99731 * 2 1 4 4 C 1.54321 * 109.88540 * 238.90531 * 2 1 3 5 5 H 1.09008 * 110.86506 * 336.82259 * 4 2 1 6 6 N 1.46496 * 110.72405 * 100.02126 * 4 2 1 7 7 C 1.34777 * 120.00262 * 199.98219 * 6 4 2 8 8 O 1.21552 * 119.99899 * 0.27243 * 7 6 4 9 9 C 1.47866 * 119.99820 * 180.02562 * 7 6 4 10 10 C 1.40632 * 120.26010 * 359.71793 * 9 7 6 11 11 N 1.30855 * 121.65427 * 179.71589 * 10 9 7 12 12 C 1.33596 * 121.58740 * 0.59413 * 11 10 9 13 13 C 1.40630 * 121.63470 * 179.68652 * 12 11 10 14 14 N 1.31153 * 120.04503 * 180.02562 * 13 12 11 15 15 C 1.32495 * 122.88342 * 359.97438 * 14 13 12 16 16 C 1.36314 * 121.71487 * 0.02562 * 15 14 13 17 17 C 1.40596 * 118.64952 * 359.97438 * 16 15 14 18 18 C 1.38995 * 120.25828 * 179.97438 * 9 7 6 19 19 C 1.55156 * 102.94521 * 218.39034 * 4 2 1 20 20 C 1.54918 * 101.57973 * 35.50006 * 19 4 2 21 21 N 1.47024 * 109.88222 * 121.09298 * 2 1 3 22 22 C 1.36939 * 125.65231 * 298.32204 * 21 2 1 23 23 H 1.07994 * 119.99548 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00061 * 180.02562 * 22 21 2 25 25 N 1.31626 * 119.99962 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99977 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47073 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47108 * 119.99919 * 26 24 22 29 29 H 1.48505 * 109.47311 * 240.00314 * 26 24 22 30 30 H 1.08999 * 109.47412 * 181.09782 * 1 2 3 31 31 H 1.09010 * 109.47042 * 301.09472 * 1 2 3 32 32 H 1.08999 * 109.47527 * 61.09603 * 1 2 3 33 33 H 0.96999 * 119.99694 * 19.98338 * 6 4 2 34 34 H 1.07989 * 119.17446 * 0.02583 * 10 9 7 35 35 H 1.08005 * 119.97792 * 359.97438 * 13 12 11 36 36 H 1.08008 * 119.14022 * 179.97438 * 15 14 13 37 37 H 1.08005 * 120.67005 * 179.97438 * 16 15 14 38 38 H 1.07996 * 121.11004 * 359.94953 * 18 9 7 39 39 H 1.09001 * 111.00644 * 153.57222 * 19 4 2 40 40 H 1.08992 * 111.00381 * 277.39015 * 19 4 2 41 41 H 1.08996 * 110.36806 * 81.83021 * 20 19 4 42 42 H 1.08995 * 110.36083 * 204.15274 * 20 19 4 43 43 H 0.96996 * 119.99512 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3064 -1.4458 -1.6210 6 7 2.4554 0.1960 -2.2875 7 6 2.5558 -0.2160 -3.5668 8 8 2.3091 -1.3709 -3.8545 9 6 2.9606 0.7383 -4.6213 10 6 3.2365 2.0785 -4.2963 11 7 3.6021 2.9446 -5.2065 12 6 3.7201 2.6009 -6.4921 13 6 4.1066 3.5325 -7.4721 14 7 4.2121 3.1613 -8.7256 15 6 3.9690 1.9240 -9.1323 16 6 3.5883 0.9456 -8.2629 17 6 3.4538 1.2689 -6.9012 18 6 3.0663 0.3191 -5.9423 19 6 3.2876 -1.5142 -0.6924 20 6 2.8145 -1.8794 0.7368 21 7 2.0300 -0.7140 1.1840 22 6 1.8050 -0.3556 2.4863 23 1 1.2142 0.5201 2.7109 24 6 2.3362 -1.1178 3.5177 25 7 3.0566 -2.1848 3.2438 26 14 2.0287 -0.6292 5.2942 27 1 1.1959 0.5998 5.3325 28 1 1.3198 -1.7301 5.9947 29 1 3.3263 -0.3684 5.9676 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3634 0.5308 0.8801 32 1 -0.3634 0.4967 -0.8996 33 1 2.6484 1.1186 -2.0586 34 1 3.1491 2.3997 -3.2690 35 1 4.3159 4.5545 -7.1925 36 1 4.0744 1.6846 -10.1803 37 1 3.3939 -0.0575 -8.6129 38 1 2.8575 -0.7030 -6.2217 39 1 3.4852 -2.4110 -1.2796 40 1 4.1655 -0.8690 -0.6610 41 1 2.1886 -2.7714 0.7129 42 1 3.6716 -2.0338 1.3922 43 1 3.4275 -2.7176 3.9645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088746733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:30 Heat of formation + Delta-G solvation = 40.991962 kcal Electronic energy + Delta-G solvation = -26544.100670 eV Core-core repulsion = 22782.222151 eV Total energy + Delta-G solvation = -3761.878518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38149 -41.05388 -39.41285 -38.69430 -35.74412 -34.82510 -34.02865 -32.70467 -32.02034 -31.46875 -30.42658 -27.27732 -25.97605 -25.68323 -25.46810 -23.67509 -22.61887 -21.81217 -21.51528 -19.72633 -19.08726 -18.72969 -18.48648 -17.42898 -17.28817 -16.61202 -16.30560 -16.11787 -15.77942 -15.62254 -15.55444 -15.24468 -15.02669 -14.40160 -14.32645 -14.24997 -13.99782 -13.84542 -13.63635 -13.47038 -13.21844 -12.93027 -12.75031 -12.61601 -12.22780 -12.12209 -11.95772 -11.93164 -11.56413 -11.49380 -11.36612 -10.97118 -10.72987 -10.54294 -10.52049 -10.08385 -9.55564 -8.88375 -7.73762 -5.18388 -1.07708 -0.64709 0.62345 1.40022 1.49650 1.50054 1.59895 1.90464 2.16606 2.52626 2.93952 2.94040 3.26290 3.35270 3.37742 3.47021 3.54482 3.58769 3.63777 3.83955 3.88942 3.95909 4.17248 4.21701 4.35987 4.49158 4.51890 4.62728 4.64026 4.68299 4.81751 4.82717 4.92199 4.97012 5.05217 5.11931 5.18779 5.35814 5.46653 5.52344 5.58779 5.62210 5.82212 6.32403 6.40237 6.50631 6.83846 7.05570 7.12843 7.80581 8.43438 9.28262 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030433 B = 0.002329 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.839058 B =12019.879307 C =12360.035053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.154 3.846 5 H 0.085 0.915 6 N -0.695 5.695 7 C 0.567 3.433 8 O -0.568 6.568 9 C -0.178 4.178 10 C 0.164 3.836 11 N -0.468 5.468 12 C 0.066 3.934 13 C 0.153 3.847 14 N -0.482 5.482 15 C 0.067 3.933 16 C -0.126 4.126 17 C -0.099 4.099 18 C 0.012 3.988 19 C -0.139 4.139 20 C 0.156 3.844 21 N -0.614 5.614 22 C -0.222 4.222 23 H 0.087 0.913 24 C -0.070 4.070 25 N -0.951 5.951 26 Si 0.976 3.024 27 H -0.264 1.264 28 H -0.298 1.298 29 H -0.294 1.294 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.190 0.810 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.067 0.933 40 H 0.070 0.930 41 H -0.014 1.014 42 H 0.077 0.923 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 9.699 -23.404 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.043 3.957 3 H 0.074 0.926 4 C 0.048 3.952 5 H 0.103 0.897 6 N -0.346 5.346 7 C 0.354 3.646 8 O -0.448 6.448 9 C -0.185 4.185 10 C -0.011 4.011 11 N -0.177 5.177 12 C -0.057 4.057 13 C -0.019 4.019 14 N -0.191 5.191 15 C -0.075 4.075 16 C -0.146 4.146 17 C -0.106 4.106 18 C -0.015 4.015 19 C -0.178 4.178 20 C 0.031 3.969 21 N -0.339 5.339 22 C -0.351 4.351 23 H 0.104 0.896 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.805 3.195 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.221 1.221 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.207 0.793 35 H 0.205 0.795 36 H 0.207 0.793 37 H 0.192 0.808 38 H 0.184 0.816 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.004 0.996 42 H 0.095 0.905 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.106 10.266 -24.007 26.133 hybrid contribution -0.483 -1.445 1.941 2.468 sum 0.623 8.821 -22.066 23.772 Atomic orbital electron populations 1.22141 0.96433 1.00808 1.01340 1.21211 0.93591 0.95237 0.85623 0.92573 1.21787 0.96363 0.90714 0.86331 0.89715 1.45757 1.68338 1.14439 1.06094 1.18167 0.76899 0.87025 0.82523 1.90783 1.51365 1.20020 1.82586 1.20975 1.06785 0.95949 0.94743 1.23507 0.89974 0.87341 1.00282 1.67931 1.12989 1.36224 1.00528 1.20324 0.99362 0.93269 0.92759 1.23403 0.92431 0.99994 0.86079 1.67518 1.13127 1.20626 1.17873 1.22852 0.95231 0.87302 1.02135 1.22338 0.98422 1.03113 0.90764 1.19144 1.01036 0.94203 0.96263 1.22108 0.88524 1.00341 0.90484 1.23207 0.97648 1.00065 0.96916 1.21678 0.95748 0.87849 0.91656 1.44727 1.59725 1.28574 1.00865 1.19423 1.26052 1.07941 0.81695 0.89559 1.25594 1.00991 0.97828 1.01842 1.70048 1.40492 1.19048 1.30549 0.85028 0.76958 0.77400 0.80068 1.18840 1.22543 1.22123 0.94538 0.93373 0.90882 0.74770 0.79259 0.79451 0.79279 0.80819 0.81602 0.91477 0.91084 0.99629 0.90518 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.14 71.98 0.66 -4.29 16 2 C 0.15 5.45 3.48 45.34 0.16 5.61 16 3 H 0.06 1.87 7.69 -2.39 -0.02 1.85 16 4 C 0.15 5.03 2.76 46.18 0.13 5.15 16 5 H 0.08 3.01 7.40 -2.38 -0.02 2.99 16 6 N -0.69 -17.04 5.16 -439.77 -2.27 -19.31 16 7 C 0.57 14.55 7.78 86.79 0.67 15.22 16 8 O -0.57 -18.72 16.11 -3.88 -0.06 -18.79 16 9 C -0.18 -3.60 5.89 -19.96 -0.12 -3.72 16 10 C 0.16 2.88 10.68 85.42 0.91 3.79 16 11 N -0.47 -9.19 10.33 -187.62 -1.94 -11.13 16 12 C 0.07 1.25 6.62 40.36 0.27 1.52 16 13 C 0.15 2.57 11.25 85.38 0.96 3.53 16 14 N -0.48 -8.05 10.28 -195.39 -2.01 -10.06 16 15 C 0.07 0.83 11.08 84.14 0.93 1.76 16 16 C -0.13 -1.53 9.88 22.40 0.22 -1.30 16 17 C -0.10 -1.72 5.75 -21.27 -0.12 -1.84 16 18 C 0.01 0.22 9.51 22.98 0.22 0.44 16 19 C -0.14 -5.22 6.77 31.99 0.22 -5.00 16 20 C 0.16 7.58 5.89 86.86 0.51 8.09 16 21 N -0.61 -29.50 3.13 -668.26 -2.09 -31.59 16 22 C -0.22 -11.73 9.89 84.03 0.83 -10.90 16 23 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 24 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 25 N -0.95 -55.78 10.09 21.65 0.22 -55.56 16 26 Si 0.98 44.63 29.55 68.60 2.03 46.66 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.67 8.05 -2.38 -0.02 1.65 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.41 7.58 6.34 -92.71 -0.59 6.99 16 34 H 0.19 2.25 6.37 -2.92 -0.02 2.23 16 35 H 0.19 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.17 2.73 7.71 -2.91 -0.02 2.71 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.08 4.26 5.87 -2.39 -0.01 4.24 16 43 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -70.77 358.24 1.26 -69.52 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.46 Total: 15.59 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.91 Total: 14.66 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -8.09 Total: -127.64 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.79 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.77 1.26 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088746733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.509 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds