Wall clock time and date at job start Tue Mar 31 2020 14:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.00187 * 2 1 4 4 C 1.54320 * 109.88161 * 238.89719 * 2 1 3 5 5 H 1.08999 * 110.87646 * 336.82960 * 4 2 1 6 6 N 1.46503 * 110.71565 * 100.03336 * 4 2 1 7 7 C 1.34778 * 119.99680 * 199.97614 * 6 4 2 8 8 O 1.21533 * 120.00051 * 359.97438 * 7 6 4 9 9 C 1.48008 * 120.00014 * 179.97438 * 7 6 4 10 10 C 1.38895 * 121.16708 * 354.20770 * 9 7 6 11 11 C 1.39345 * 119.66445 * 180.24163 * 10 9 7 12 12 N 1.31108 * 121.90920 * 359.46789 * 11 10 9 13 13 C 1.33284 * 121.61642 * 0.25211 * 12 11 10 14 14 C 1.40828 * 121.92499 * 180.02562 * 13 12 11 15 15 C 1.36159 * 118.77351 * 179.97438 * 14 13 12 16 16 N 1.32537 * 121.96255 * 0.04557 * 15 14 13 17 17 C 1.31337 * 122.60191 * 359.97438 * 16 15 14 18 18 C 1.40092 * 119.87264 * 359.97438 * 17 16 15 19 19 C 1.55164 * 102.94429 * 218.39303 * 4 2 1 20 20 C 1.54909 * 101.57819 * 35.50574 * 19 4 2 21 21 N 1.47028 * 109.88065 * 121.09452 * 2 1 3 22 22 C 1.36934 * 125.64553 * 298.32217 * 21 2 1 23 23 H 1.08000 * 120.00514 * 0.02562 * 22 21 2 24 24 C 1.38814 * 120.00016 * 180.02562 * 22 21 2 25 25 N 1.31623 * 119.99988 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00387 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46849 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46721 * 119.99769 * 26 24 22 29 29 H 1.48496 * 109.47365 * 240.00104 * 26 24 22 30 30 H 1.08997 * 109.47223 * 181.10045 * 1 2 3 31 31 H 1.09004 * 109.47315 * 301.09963 * 1 2 3 32 32 H 1.09000 * 109.46925 * 61.09549 * 1 2 3 33 33 H 0.96994 * 120.00339 * 19.97429 * 6 4 2 34 34 H 1.07998 * 120.16408 * 359.96500 * 10 9 7 35 35 H 1.08007 * 119.04510 * 179.74566 * 11 10 9 36 36 H 1.08011 * 120.61324 * 359.96635 * 14 13 12 37 37 H 1.08003 * 119.02400 * 180.02562 * 15 14 13 38 38 H 1.08002 * 120.06553 * 179.97438 * 17 16 15 39 39 H 1.08994 * 111.00097 * 153.58212 * 19 4 2 40 40 H 1.09004 * 111.00134 * 277.39456 * 19 4 2 41 41 H 1.08994 * 110.36787 * 81.82912 * 20 19 4 42 42 H 1.09002 * 110.36025 * 204.15366 * 20 19 4 43 43 H 0.96994 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3064 -1.4460 -1.6210 6 7 2.4555 0.1959 -2.2874 7 6 2.5560 -0.2162 -3.5667 8 8 2.3145 -1.3723 -3.8534 9 6 2.9603 0.7391 -4.6224 10 6 3.1263 2.0898 -4.3443 11 6 3.5028 2.9625 -5.3633 12 7 3.7182 2.5464 -6.5878 13 6 3.5830 1.2637 -6.9238 14 6 3.8132 0.8095 -8.2368 15 6 3.6567 -0.5154 -8.5089 16 7 3.2944 -1.3851 -7.5767 17 6 3.0628 -1.0335 -6.3326 18 6 3.1973 0.3074 -5.9499 19 6 3.2876 -1.5144 -0.6922 20 6 2.8143 -1.8795 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.8049 -0.3555 2.4862 23 1 1.2141 0.5202 2.7109 24 6 2.3360 -1.1177 3.5177 25 7 3.0564 -2.1847 3.2440 26 14 2.0296 -0.6283 5.2943 27 1 1.1967 0.6006 5.3325 28 1 1.3203 -1.7285 5.9955 29 1 3.3276 -0.3682 5.9670 30 1 -0.3633 -1.0274 0.0197 31 1 -0.3634 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8997 33 1 2.6486 1.1185 -2.0585 34 1 2.9601 2.4624 -3.3444 35 1 3.6251 4.0115 -5.1368 36 1 4.1084 1.4995 -9.0136 37 1 3.8326 -0.8681 -9.5144 38 1 2.7692 -1.7767 -5.6061 39 1 3.4851 -2.4112 -1.2794 40 1 4.1656 -0.8692 -0.6608 41 1 2.1884 -2.7715 0.7130 42 1 3.6715 -2.0339 1.3924 43 1 3.4272 -2.7175 3.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088773759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:50 Heat of formation + Delta-G solvation = 68.226077 kcal Electronic energy + Delta-G solvation = -26993.346326 eV Core-core repulsion = 23232.648768 eV Total energy + Delta-G solvation = -3760.697559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66184 -39.79650 -38.29103 -37.72024 -34.42096 -33.82496 -32.17183 -31.84901 -30.72545 -30.43472 -28.72145 -26.10456 -24.76813 -24.46273 -24.08750 -23.28275 -21.15373 -20.37709 -19.89676 -18.80638 -18.18947 -17.53745 -16.86496 -16.30583 -16.08297 -15.44008 -15.21008 -15.02826 -14.73383 -14.52899 -14.50115 -14.08821 -13.76211 -13.40279 -13.36420 -13.06544 -12.89870 -12.31518 -12.22583 -12.13477 -11.67652 -11.23284 -10.97627 -10.93753 -10.90148 -10.71220 -10.63745 -10.40653 -10.13040 -10.00622 -9.85926 -9.68246 -9.66865 -9.48155 -8.97389 -8.76823 -8.71546 -6.96079 -5.72815 -3.16243 -0.37233 0.33520 1.25981 2.50494 2.86669 2.95407 3.34653 3.40171 3.42773 3.76066 3.78580 4.09091 4.19634 4.23113 4.36126 4.38943 4.42790 4.83142 4.96925 5.03918 5.18936 5.23381 5.32885 5.40894 5.41791 5.51460 5.57382 5.63285 5.68557 5.98234 6.02331 6.10778 6.17602 6.22490 6.35474 6.42329 6.47492 6.60889 6.74843 6.96098 7.34085 7.36667 7.45797 7.55193 7.69406 7.77511 8.02246 8.27282 9.12882 9.73692 10.36480 11.30543 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002629 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.043994 B =10646.936191 C =11144.892836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.133 3.867 5 H 0.097 0.903 6 N -0.699 5.699 7 C 0.556 3.444 8 O -0.524 6.524 9 C -0.039 4.039 10 C -0.146 4.146 11 C 0.150 3.850 12 N -0.465 5.465 13 C 0.153 3.847 14 C -0.152 4.152 15 C 0.094 3.906 16 N -0.489 5.489 17 C 0.164 3.836 18 C -0.135 4.135 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.222 4.222 23 H 0.079 0.921 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.399 0.601 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.201 0.799 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.110 0.890 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 9.262 -18.867 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.115 0.885 6 N -0.348 5.348 7 C 0.342 3.658 8 O -0.402 6.402 9 C -0.053 4.053 10 C -0.167 4.167 11 C -0.023 4.023 12 N -0.174 5.174 13 C 0.027 3.973 14 C -0.173 4.173 15 C -0.051 4.051 16 N -0.197 5.197 17 C -0.008 4.008 18 C -0.140 4.140 19 C -0.193 4.193 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.235 0.765 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.218 0.782 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.128 0.872 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.170 8.015 -19.938 21.520 hybrid contribution -0.256 1.174 1.916 2.262 sum 0.913 9.189 -18.022 20.250 Atomic orbital electron populations 1.22257 0.97716 1.01613 1.00015 1.20974 0.92703 0.94731 0.86790 0.94631 1.22313 0.98026 0.90652 0.86104 0.88496 1.46013 1.67738 1.14436 1.06652 1.17977 0.78225 0.87181 0.82444 1.90611 1.49954 1.18361 1.81244 1.20455 0.97233 0.94268 0.93294 1.22556 0.99420 0.92915 1.01846 1.23140 0.91263 1.00657 0.87288 1.67866 1.13833 1.15413 1.20247 1.18915 0.95594 0.88751 0.94020 1.21696 1.03005 0.97459 0.95103 1.22429 0.94175 0.89301 0.99152 1.67768 1.11608 1.38418 1.01866 1.24527 0.89143 0.94006 0.93107 1.19687 1.03423 0.97186 0.93671 1.23424 0.96497 0.99444 0.99907 1.21967 0.97470 0.88422 0.89403 1.44493 1.59253 1.28215 1.00034 1.19053 1.27294 1.08262 0.80400 0.90363 1.24798 1.00256 0.97334 0.98114 1.69793 1.38986 1.17843 1.30164 0.86010 0.77376 0.77571 0.84570 1.20533 1.21722 1.21722 0.92782 0.92568 0.94320 0.76489 0.83298 0.81118 0.83583 0.82299 0.78249 0.91682 0.91901 0.96594 0.87210 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.14 37.16 0.34 -2.34 16 2 C 0.16 2.87 3.48 -66.95 -0.23 2.64 16 3 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 4 C 0.13 2.19 2.76 -66.09 -0.18 2.01 16 5 H 0.10 1.70 7.41 -51.93 -0.38 1.32 16 6 N -0.70 -8.97 5.16 -52.92 -0.27 -9.24 16 7 C 0.56 7.48 7.76 -12.25 -0.10 7.39 16 8 O -0.52 -8.49 13.34 5.34 0.07 -8.42 16 9 C -0.04 -0.45 5.94 -104.37 -0.62 -1.07 16 10 C -0.15 -1.22 9.60 -38.93 -0.37 -1.59 16 11 C 0.15 1.21 11.14 -17.45 -0.19 1.02 16 12 N -0.47 -4.99 10.33 -10.95 -0.11 -5.10 16 13 C 0.15 1.80 6.63 -84.88 -0.56 1.24 16 14 C -0.15 -1.52 10.08 -39.35 -0.40 -1.91 16 15 C 0.09 0.95 11.06 -17.99 -0.20 0.75 16 16 N -0.49 -6.28 10.31 -13.24 -0.14 -6.42 16 17 C 0.16 2.19 10.52 -17.07 -0.18 2.01 16 18 C -0.13 -1.70 5.77 -106.55 -0.61 -2.31 16 19 C -0.15 -2.83 6.77 -24.58 -0.17 -2.99 16 20 C 0.15 3.53 5.89 -2.53 -0.01 3.51 16 21 N -0.59 -14.01 3.13 -162.58 -0.51 -14.52 16 22 C -0.22 -5.78 9.89 -15.06 -0.15 -5.93 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -25.83 10.09 55.49 0.56 -25.27 16 26 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.02 6.49 -40.82 -0.26 3.76 16 34 H 0.15 0.79 6.56 -52.49 -0.34 0.45 16 35 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.20 2.86 5.09 -52.49 -0.27 2.59 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -31.57 353.28 -9.15 -40.72 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.31 Total: 4.63 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.74 Total: 2.07 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.47 Total: -60.55 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.57 -9.15 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088773759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.945 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds