Wall clock time and date at job start Tue Mar 31 2020 14:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.34777 * 120.00328 * 205.00007 * 6 4 2 8 8 O 1.21553 * 119.99840 * 0.02562 * 7 6 4 9 9 C 1.47922 * 120.00509 * 180.02562 * 7 6 4 10 10 C 1.38937 * 119.84463 * 179.72790 * 9 7 6 11 11 C 1.40654 * 117.38254 * 179.74962 * 10 9 7 12 12 C 1.40262 * 122.03238 * 180.19398 * 11 10 9 13 13 C 1.36269 * 119.46849 * 180.32687 * 12 11 10 14 14 C 1.39326 * 120.87784 * 359.97438 * 13 12 11 15 15 C 1.36224 * 121.15483 * 0.02562 * 14 13 12 16 16 C 1.40340 * 119.68468 * 0.02562 * 15 14 13 17 17 N 1.33814 * 121.62524 * 179.97438 * 16 15 14 18 18 N 1.28438 * 121.69250 * 180.02562 * 17 16 15 19 19 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 20 20 C 1.54906 * 101.58328 * 35.49714 * 19 4 2 21 21 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 22 22 C 1.36944 * 125.64743 * 298.32772 * 21 2 1 23 23 H 1.08002 * 119.99783 * 359.97438 * 22 21 2 24 24 C 1.38808 * 120.00111 * 179.97438 * 22 21 2 25 25 N 1.31620 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00090 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46949 * 59.99738 * 26 24 22 28 28 H 1.48497 * 109.47224 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47032 * 299.99874 * 26 24 22 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 34 34 H 1.08001 * 121.30666 * 359.97438 * 10 9 7 35 35 H 1.07998 * 120.26593 * 0.30480 * 12 11 10 36 36 H 1.08005 * 119.55791 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.42187 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.16117 * 179.97438 * 15 14 13 39 39 H 1.09003 * 110.99799 * 277.42087 * 19 4 2 40 40 H 1.08999 * 111.03442 * 153.58709 * 19 4 2 41 41 H 1.09001 * 110.36496 * 204.15090 * 20 19 4 42 42 H 1.09002 * 110.36576 * 81.83622 * 20 19 4 43 43 H 0.97002 * 120.00225 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1932 -3.5790 8 8 2.1279 -1.3248 -3.8757 9 6 2.8631 0.7599 -4.6353 10 6 2.8702 0.3566 -5.9648 11 6 3.2588 1.3062 -6.9269 12 6 3.2972 1.0051 -8.2962 13 6 3.6883 1.9634 -9.1826 14 6 4.0495 3.2363 -8.7463 15 6 4.0234 3.5618 -7.4238 16 6 3.6273 2.6021 -6.4795 17 7 3.5880 2.8796 -5.1711 18 7 3.2261 2.0022 -4.3058 19 6 3.2876 -1.5152 -0.6903 20 6 2.8145 -1.8783 0.7394 21 7 2.0301 -0.7124 1.1848 22 6 1.8050 -0.3522 2.4867 23 1 1.2148 0.5243 2.7102 24 6 2.3354 -1.1135 3.5192 25 7 3.0543 -2.1819 3.2468 26 14 2.0290 -0.6217 5.2950 27 1 0.5684 -0.6210 5.5634 28 1 2.6976 -1.5912 6.1995 29 1 2.5768 0.7378 5.5337 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 2.7188 1.0960 -2.0512 34 1 2.5848 -0.6456 -6.2488 35 1 3.0193 0.0216 -8.6453 36 1 3.7180 1.7332 -10.2374 37 1 4.3554 3.9780 -9.4693 38 1 4.3071 4.5534 -7.1033 39 1 4.1654 -0.8697 -0.6593 40 1 3.4858 -2.4128 -1.2761 41 1 3.6717 -2.0318 1.3950 42 1 2.1887 -2.7705 0.7167 43 1 3.4246 -2.7141 3.9683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088784526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:27 Heat of formation + Delta-G solvation = 74.015385 kcal Electronic energy + Delta-G solvation = -26536.345129 eV Core-core repulsion = 22775.898614 eV Total energy + Delta-G solvation = -3760.446515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71377 -39.70593 -38.17191 -37.49838 -34.17961 -34.01001 -32.36021 -31.72487 -30.87597 -30.33671 -28.60947 -25.89019 -25.55648 -24.26618 -23.94945 -22.87831 -21.36182 -20.19518 -19.88557 -19.07061 -18.48663 -17.22687 -16.75434 -16.40694 -15.91229 -15.69896 -15.13051 -14.79434 -14.74516 -14.46651 -14.16292 -13.96632 -13.82000 -13.37688 -12.83727 -12.81161 -12.72531 -12.49835 -12.11768 -11.97676 -11.57011 -11.51472 -11.14636 -11.11350 -10.83346 -10.81599 -10.57206 -10.46452 -10.16006 -10.10448 -9.92612 -9.82916 -9.72583 -9.54716 -8.89423 -8.67154 -8.60110 -6.85335 -5.63184 -3.05885 -0.47519 -0.00014 1.26391 2.05288 2.97396 3.02853 3.42445 3.46580 3.47828 3.57095 3.58300 3.85401 4.08273 4.16118 4.29544 4.50633 4.54308 4.61890 4.72359 5.06635 5.20281 5.23218 5.34011 5.37371 5.44150 5.55775 5.63773 5.68615 5.74419 5.79815 5.83330 6.15022 6.15835 6.25187 6.32424 6.35560 6.52428 6.61914 6.71520 6.87917 7.10601 7.52283 7.62665 7.64595 7.86930 8.15518 8.26020 8.37318 9.22868 9.83683 10.47464 11.40255 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.002340 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.491432 B =11962.570531 C =12298.251836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.039 0.961 4 C 0.132 3.868 5 H 0.097 0.903 6 N -0.690 5.690 7 C 0.575 3.425 8 O -0.534 6.534 9 C -0.001 4.001 10 C -0.029 4.029 11 C -0.075 4.075 12 C -0.094 4.094 13 C -0.098 4.098 14 C -0.093 4.093 15 C -0.079 4.079 16 C 0.070 3.930 17 N -0.200 5.200 18 N -0.189 5.189 19 C -0.154 4.154 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.219 4.219 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.922 5.922 26 Si 0.915 3.085 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.410 0.590 34 H 0.168 0.832 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.015 0.985 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 8.739 -26.474 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.057 0.943 4 C 0.028 3.972 5 H 0.115 0.885 6 N -0.339 5.339 7 C 0.357 3.643 8 O -0.411 6.411 9 C -0.135 4.135 10 C -0.060 4.060 11 C -0.083 4.083 12 C -0.113 4.113 13 C -0.118 4.118 14 C -0.114 4.114 15 C -0.100 4.100 16 C -0.057 4.057 17 N -0.056 5.056 18 N -0.047 5.047 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.570 5.570 26 Si 0.745 3.255 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.246 0.754 34 H 0.185 0.815 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.033 0.967 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.791 8.839 -25.211 26.775 hybrid contribution -0.317 -0.358 -0.136 0.497 sum 1.475 8.480 -25.347 26.769 Atomic orbital electron populations 1.22242 0.97812 1.01379 1.00042 1.21006 0.92666 0.94982 0.86730 0.94324 1.22284 0.97944 0.90762 0.86239 0.88505 1.45950 1.65595 1.16991 1.05347 1.17432 0.78486 0.86002 0.82367 1.90802 1.48898 1.19130 1.82250 1.22657 1.02055 0.94279 0.94525 1.22615 0.91278 1.00649 0.91435 1.18832 0.99909 0.94016 0.95531 1.21065 0.98886 1.00592 0.90708 1.21137 0.97074 0.93058 1.00528 1.21115 0.97572 0.96913 0.95760 1.20824 0.98264 0.99198 0.91697 1.20469 0.98240 0.93250 0.93776 1.73898 1.08976 1.23664 0.99053 1.73246 1.04213 0.99074 1.28123 1.23427 0.96720 0.99302 0.99880 1.21952 0.97416 0.88399 0.89409 1.44474 1.59264 1.28215 1.00045 1.18985 1.27174 1.08111 0.80488 0.90465 1.24784 1.00396 0.97402 0.98047 1.69780 1.39179 1.17816 1.30250 0.86151 0.77617 0.77432 0.84274 1.21251 1.21625 1.21164 0.92597 0.92927 0.94329 0.75377 0.81491 0.84090 0.84609 0.84426 0.83628 0.91798 0.91911 0.87251 0.96690 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.15 3.18 3.48 -66.95 -0.23 2.94 16 3 H 0.04 0.79 7.72 -51.92 -0.40 0.39 16 4 C 0.13 2.47 2.84 -66.10 -0.19 2.28 16 5 H 0.10 1.89 7.26 -51.92 -0.38 1.51 16 6 N -0.69 -11.17 5.17 -52.95 -0.27 -11.44 16 7 C 0.57 9.16 7.80 -12.29 -0.10 9.06 16 8 O -0.53 -9.67 16.00 5.32 0.09 -9.59 16 9 C 0.00 -0.02 6.82 -82.89 -0.57 -0.58 16 10 C -0.03 -0.32 9.51 -38.41 -0.37 -0.69 16 11 C -0.07 -0.72 5.75 -106.80 -0.61 -1.34 16 12 C -0.09 -0.60 9.81 -39.53 -0.39 -0.99 16 13 C -0.10 -0.47 9.96 -39.89 -0.40 -0.87 16 14 C -0.09 -0.46 9.94 -39.90 -0.40 -0.86 16 15 C -0.08 -0.58 10.00 -39.52 -0.40 -0.98 16 16 C 0.07 0.75 6.69 -84.79 -0.57 0.18 16 17 N -0.20 -2.63 11.55 32.23 0.37 -2.26 16 18 N -0.19 -2.67 10.70 33.24 0.36 -2.32 16 19 C -0.15 -3.09 6.77 -24.59 -0.17 -3.26 16 20 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 21 N -0.59 -14.97 3.13 -162.57 -0.51 -15.48 16 22 C -0.22 -6.01 9.87 -15.06 -0.15 -6.16 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 26 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 6.19 7.70 -40.82 -0.31 5.88 16 34 H 0.17 1.57 7.69 -52.49 -0.40 1.16 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.27 8.06 -52.48 -0.42 -0.16 16 37 H 0.14 0.29 8.06 -52.49 -0.42 -0.14 16 38 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.11 3.00 5.88 -51.93 -0.31 2.69 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -32.50 360.60 -8.86 -41.36 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.57 Total: 3.99 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.29 Total: -0.52 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.51 Total: -57.72 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.50 -8.86 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088784526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.374 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds