Wall clock time and date at job start Tue Mar 31 2020 14:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87195 * 2 1 4 4 C 1.54328 * 109.87848 * 238.82680 * 2 1 3 5 5 H 1.09001 * 110.72067 * 336.74921 * 4 2 1 6 6 N 1.46503 * 110.72149 * 100.02625 * 4 2 1 7 7 C 1.34769 * 119.99872 * 204.99931 * 6 4 2 8 8 O 1.21494 * 120.00040 * 359.97438 * 7 6 4 9 9 C 1.48380 * 120.00107 * 179.97438 * 7 6 4 10 10 C 1.40212 * 119.22398 * 179.72866 * 9 7 6 11 11 C 1.36637 * 119.91070 * 179.74320 * 10 9 7 12 12 C 1.40557 * 118.10767 * 0.49659 * 11 10 9 13 13 C 1.40408 * 122.06775 * 179.75119 * 12 11 10 14 14 N 1.31244 * 119.87085 * 180.02562 * 13 12 11 15 15 C 1.32595 * 122.68895 * 359.97438 * 14 13 12 16 16 C 1.36106 * 121.99128 * 0.02749 * 15 14 13 17 17 C 1.40938 * 118.76585 * 359.97373 * 16 15 14 18 18 N 1.31974 * 119.21875 * 0.02562 * 9 7 6 19 19 C 1.55161 * 102.94007 * 218.38605 * 4 2 1 20 20 C 1.54911 * 101.58121 * 35.50246 * 19 4 2 21 21 N 1.47019 * 109.88443 * 121.01780 * 2 1 3 22 22 C 1.36939 * 125.65017 * 298.31534 * 21 2 1 23 23 H 1.07999 * 119.99598 * 341.50761 * 22 21 2 24 24 C 1.38807 * 120.00201 * 161.49470 * 22 21 2 25 25 N 1.31619 * 120.00244 * 157.62938 * 24 22 21 26 26 Si 1.86806 * 119.99966 * 337.62860 * 24 22 21 27 27 H 1.48497 * 109.47000 * 84.53743 * 26 24 22 28 28 H 1.48500 * 109.47414 * 204.54010 * 26 24 22 29 29 H 1.48499 * 109.47120 * 324.53683 * 26 24 22 30 30 H 1.09006 * 109.46791 * 300.43483 * 1 2 3 31 31 H 1.09002 * 109.47241 * 180.44268 * 1 2 3 32 32 H 1.08997 * 109.47535 * 60.43256 * 1 2 3 33 33 H 0.96998 * 119.99549 * 24.99645 * 6 4 2 34 34 H 1.08002 * 120.04235 * 359.97438 * 10 9 7 35 35 H 1.08004 * 120.94895 * 180.24657 * 11 10 9 36 36 H 1.07999 * 120.05931 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.00823 * 180.02562 * 15 14 13 38 38 H 1.08001 * 120.61674 * 179.97438 * 16 15 14 39 39 H 1.08996 * 111.00629 * 277.42635 * 19 4 2 40 40 H 1.08998 * 111.03539 * 153.59027 * 19 4 2 41 41 H 1.08999 * 110.37163 * 204.14908 * 20 19 4 42 42 H 1.09003 * 110.36773 * 81.82763 * 20 19 4 43 43 H 0.96996 * 120.00123 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 -1.2418 5 1 1.3050 -1.4482 -1.6163 6 7 2.4553 0.1929 -2.2879 7 6 2.4580 -0.1933 -3.5791 8 8 2.1285 -1.3245 -3.8754 9 6 2.8631 0.7631 -4.6387 10 6 2.8654 0.3423 -5.9762 11 6 3.2310 1.2130 -6.9637 12 6 3.6069 2.5155 -6.5925 13 6 4.0021 3.4753 -7.5380 14 7 4.3450 4.6791 -7.1432 15 6 4.3369 5.0442 -5.8685 16 6 3.9701 4.1885 -4.8757 17 6 3.5877 2.8760 -5.2184 18 7 3.2186 1.9879 -4.2994 19 6 3.2876 -1.5152 -0.6904 20 6 2.8146 -1.8784 0.7393 21 7 2.0300 -0.7124 1.1848 22 6 1.8051 -0.3522 2.4867 23 1 1.4863 0.6526 2.7215 24 6 1.9867 -1.2784 3.5045 25 7 2.2077 -0.8686 4.7356 26 14 1.9173 -3.1066 3.1269 27 1 3.2478 -3.5649 2.6526 28 1 1.5463 -3.8523 4.3563 29 1 0.9027 -3.3559 2.0716 30 1 -0.3633 0.5206 0.8861 31 1 -0.3634 -1.0276 0.0079 32 1 -0.3634 0.5071 -0.8938 33 1 2.7186 1.0960 -2.0512 34 1 2.5749 -0.6675 -6.2258 35 1 3.2349 0.9078 -7.9998 36 1 4.0246 3.2232 -8.5879 37 1 4.6303 6.0509 -5.6102 38 1 3.9721 4.5093 -3.8444 39 1 4.1654 -0.8698 -0.6594 40 1 3.4858 -2.4128 -1.2762 41 1 3.6716 -2.0319 1.3950 42 1 2.1886 -2.7705 0.7166 43 1 2.3350 -1.5159 5.4467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088881312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:43 Heat of formation + Delta-G solvation = 64.940352 kcal Electronic energy + Delta-G solvation = -26753.733831 eV Core-core repulsion = 22992.893793 eV Total energy + Delta-G solvation = -3760.840038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70518 -40.00576 -38.45778 -37.63539 -34.51687 -33.94311 -32.38834 -31.84608 -30.88770 -30.73195 -29.36931 -26.43751 -24.94308 -24.38774 -23.90907 -23.13753 -21.66182 -20.63965 -19.96597 -18.97434 -18.21903 -17.69916 -16.92147 -16.35538 -16.16360 -15.56693 -15.31828 -15.06428 -14.86712 -14.67132 -14.53677 -14.29144 -13.69385 -13.47606 -13.37759 -13.13737 -12.94715 -12.77346 -12.70029 -12.15271 -11.90189 -11.59327 -11.22482 -11.20516 -10.96362 -10.79734 -10.58659 -10.50562 -10.25536 -10.10158 -10.00762 -9.81195 -9.76595 -9.45091 -8.99676 -8.91212 -8.68096 -7.10034 -5.95835 -3.26988 -0.41228 0.09649 1.35230 2.09650 2.88760 3.00472 3.35175 3.49090 3.50993 3.55928 3.65296 3.85812 4.00562 4.18675 4.24283 4.39469 4.54263 4.70076 4.83668 4.91113 5.10715 5.12053 5.18452 5.20267 5.27921 5.31522 5.42908 5.54631 5.58071 5.82221 5.85779 5.90798 6.02415 6.10873 6.14400 6.24279 6.37407 6.40389 6.60056 6.71156 6.76082 6.93568 7.09666 7.41244 7.51608 7.68064 8.06850 8.29778 8.80937 9.67065 10.14078 11.20049 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.002689 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.522511 B =10409.133500 C =11094.949847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.048 0.952 4 C 0.131 3.869 5 H 0.101 0.899 6 N -0.689 5.689 7 C 0.565 3.435 8 O -0.528 6.528 9 C 0.146 3.854 10 C -0.131 4.131 11 C -0.038 4.038 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.484 5.484 15 C 0.087 3.913 16 C -0.132 4.132 17 C 0.153 3.847 18 N -0.446 5.446 19 C -0.140 4.140 20 C 0.111 3.889 21 N -0.601 5.601 22 C -0.238 4.238 23 H 0.093 0.907 24 C 0.023 3.977 25 N -0.908 5.908 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.303 1.303 29 H -0.275 1.275 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.411 0.589 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 7.649 -25.900 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.066 0.934 4 C 0.026 3.974 5 H 0.119 0.881 6 N -0.339 5.339 7 C 0.348 3.652 8 O -0.404 6.404 9 C -0.010 4.010 10 C -0.151 4.151 11 C -0.066 4.066 12 C -0.160 4.160 13 C -0.015 4.015 14 N -0.191 5.191 15 C -0.056 4.056 16 C -0.153 4.153 17 C 0.025 3.975 18 N -0.158 5.158 19 C -0.180 4.180 20 C -0.014 4.014 21 N -0.327 5.327 22 C -0.365 4.365 23 H 0.110 0.890 24 C -0.176 4.176 25 N -0.552 5.552 26 Si 0.711 3.289 27 H -0.212 1.212 28 H -0.231 1.231 29 H -0.201 1.201 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.248 0.752 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.444 7.899 -25.397 26.819 hybrid contribution -0.226 -1.536 -0.099 1.556 sum 3.218 6.363 -25.496 26.474 Atomic orbital electron populations 1.22208 0.97096 1.01568 1.00633 1.21085 0.92958 0.95347 0.85801 0.93423 1.22265 0.97339 0.91077 0.86714 0.88090 1.45910 1.65725 1.16942 1.05328 1.17868 0.78543 0.86308 0.82508 1.90798 1.48209 1.19157 1.82224 1.21664 0.94758 0.90924 0.93642 1.21852 0.99128 1.02323 0.91811 1.21462 0.93379 0.91056 1.00682 1.19964 1.03466 0.96929 0.95612 1.23260 0.91393 0.87435 0.99419 1.67497 1.13602 1.18690 1.19328 1.22307 0.95784 1.00221 0.87294 1.21855 0.99597 0.91467 1.02357 1.18888 0.96005 0.94136 0.88508 1.67894 1.09689 1.01544 1.36629 1.23150 0.97531 1.00121 0.97188 1.21965 0.95302 0.91150 0.92972 1.44811 1.57523 1.28875 1.01467 1.18574 1.42565 0.96776 0.78579 0.88957 1.24983 1.00090 0.97666 0.94816 1.69832 1.50725 1.33994 1.00611 0.87012 0.78265 0.87449 0.76167 1.21185 1.23077 1.20123 0.91871 0.92993 0.94063 0.75185 0.82570 0.82874 0.81387 0.82034 0.83098 0.90801 0.91113 0.91846 0.95399 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.14 37.16 0.34 -2.47 16 2 C 0.16 2.95 3.48 -66.95 -0.23 2.71 16 3 H 0.05 0.89 7.72 -51.93 -0.40 0.49 16 4 C 0.13 2.18 2.84 -66.09 -0.19 1.99 16 5 H 0.10 1.76 7.26 -51.93 -0.38 1.39 16 6 N -0.69 -9.78 5.16 -52.80 -0.27 -10.05 16 7 C 0.56 7.96 7.82 -12.09 -0.09 7.87 16 8 O -0.53 -8.68 15.93 5.37 0.09 -8.59 16 9 C 0.15 1.72 6.75 -82.89 -0.56 1.16 16 10 C -0.13 -1.20 9.54 -39.42 -0.38 -1.57 16 11 C -0.04 -0.26 9.92 -39.29 -0.39 -0.65 16 12 C -0.16 -1.30 5.75 -106.74 -0.61 -1.91 16 13 C 0.16 1.12 11.05 -16.99 -0.19 0.93 16 14 N -0.48 -4.16 10.30 -13.18 -0.14 -4.30 16 15 C 0.09 0.67 11.06 -17.99 -0.20 0.48 16 16 C -0.13 -1.14 10.08 -39.33 -0.40 -1.54 16 17 C 0.15 1.58 6.63 -84.86 -0.56 1.01 16 18 N -0.45 -5.19 9.50 -7.49 -0.07 -5.26 16 19 C -0.14 -2.45 6.77 -24.58 -0.17 -2.62 16 20 C 0.11 2.41 4.69 -2.53 -0.01 2.40 16 21 N -0.60 -14.06 2.94 -162.57 -0.48 -14.53 16 22 C -0.24 -6.56 10.17 -15.06 -0.15 -6.71 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 24 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 25 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 26 Si 0.88 22.48 24.27 -169.99 -4.13 18.35 16 27 H -0.28 -7.01 6.49 56.52 0.37 -6.64 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 29 H -0.28 -6.95 6.66 56.52 0.38 -6.57 16 30 H 0.06 1.21 8.03 -51.93 -0.42 0.80 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 5.37 7.68 -40.82 -0.31 5.06 16 34 H 0.16 1.29 7.60 -52.49 -0.40 0.89 16 35 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 36 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.46 6.64 -51.93 -0.34 1.11 16 42 H 0.03 0.63 5.58 -51.93 -0.29 0.34 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -33.52 355.10 -8.30 -41.82 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.54 Total: 2.53 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.89 Total: 1.65 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.18 Total: -61.11 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.13 Total: 18.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.52 -8.30 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088881312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.761 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds