Wall clock time and date at job start Tue Mar 31 2020 14:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87596 * 2 1 4 4 C 1.54426 * 110.00837 * 238.90668 * 2 1 3 5 5 H 1.08999 * 110.72656 * 336.66515 * 4 2 1 6 6 N 1.46498 * 110.75775 * 99.96454 * 4 2 1 7 7 C 1.34783 * 120.00145 * 199.94315 * 6 4 2 8 8 O 1.21544 * 119.99718 * 359.97438 * 7 6 4 9 9 C 1.47864 * 120.00291 * 180.02562 * 7 6 4 10 10 C 1.38959 * 121.42009 * 354.27525 * 9 7 6 11 11 N 1.32581 * 120.33775 * 179.80114 * 10 9 7 12 12 N 1.28379 * 123.43308 * 0.47990 * 11 10 9 13 13 C 1.33464 * 121.84958 * 359.77304 * 12 11 10 14 14 C 1.40588 * 121.73015 * 179.97438 * 13 12 11 15 15 C 1.36109 * 119.61289 * 180.02562 * 14 13 12 16 16 C 1.39376 * 121.12893 * 0.02562 * 15 14 13 17 17 C 1.36349 * 120.88404 * 0.02562 * 16 15 14 18 18 C 1.39852 * 119.49987 * 359.96339 * 17 16 15 19 19 C 1.55156 * 102.89733 * 218.32270 * 4 2 1 20 20 C 1.54909 * 101.61308 * 35.49947 * 19 4 2 21 21 N 1.47023 * 109.87945 * 121.01616 * 2 1 3 22 22 C 1.36939 * 125.64587 * 298.47263 * 21 2 1 23 23 H 1.07993 * 120.00514 * 0.02562 * 22 21 2 24 24 C 1.38820 * 119.99664 * 180.02562 * 22 21 2 25 25 N 1.31617 * 120.00156 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99680 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47299 * 60.00247 * 26 24 22 28 28 H 1.48503 * 109.46942 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47085 * 299.99730 * 26 24 22 30 30 H 1.08998 * 109.47539 * 300.43722 * 1 2 3 31 31 H 1.08998 * 109.47000 * 60.44276 * 1 2 3 32 32 H 1.09005 * 109.46969 * 180.44176 * 1 2 3 33 33 H 0.97000 * 120.00557 * 19.94456 * 6 4 2 34 34 H 1.07997 * 119.82779 * 0.02562 * 10 9 7 35 35 H 1.08004 * 120.19414 * 0.04358 * 14 13 12 36 36 H 1.07999 * 119.44075 * 180.02562 * 15 14 13 37 37 H 1.08000 * 119.56237 * 180.02562 * 16 15 14 38 38 H 1.08002 * 120.24561 * 180.02562 * 17 16 15 39 39 H 1.09003 * 110.99946 * 277.40543 * 19 4 2 40 40 H 1.09001 * 111.00571 * 153.59494 * 19 4 2 41 41 H 1.08996 * 110.36807 * 81.81713 * 20 19 4 42 42 H 1.09003 * 110.36500 * 204.13412 * 20 19 4 43 43 H 0.96997 * 119.99764 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0584 -0.7494 -1.2426 5 1 1.3108 -1.4478 -1.6187 6 7 2.4588 0.1959 -2.2877 7 6 2.5623 -0.2173 -3.5664 8 8 2.3240 -1.3743 -3.8524 9 6 2.9670 0.7367 -4.6212 10 6 3.1336 2.0893 -4.3496 11 7 3.5008 2.9251 -5.3109 12 7 3.7130 2.5596 -6.5232 13 6 3.5812 1.2887 -6.9089 14 6 3.8137 0.8912 -8.2372 15 6 3.6660 -0.4167 -8.5835 16 6 3.2867 -1.3727 -7.6429 17 6 3.0518 -1.0238 -6.3459 18 6 3.1944 0.3115 -5.9554 19 6 3.2918 -1.5109 -0.6893 20 6 2.8175 -1.8763 0.7395 21 7 2.0299 -0.7124 1.1849 22 6 1.8024 -0.3538 2.4868 23 1 1.2096 0.5208 2.7103 24 6 2.3339 -1.1144 3.5193 25 7 3.0568 -2.1800 3.2470 26 14 2.0229 -0.6255 5.2952 27 1 0.5619 -0.6303 5.5614 28 1 2.6935 -1.5937 6.1998 29 1 2.5656 0.7356 5.5362 30 1 -0.3634 0.5206 0.8860 31 1 -0.3633 0.5069 -0.8939 32 1 -0.3633 -1.0277 0.0079 33 1 2.6494 1.1192 -2.0595 34 1 2.9665 2.4608 -3.3494 35 1 4.1082 1.6195 -8.9785 36 1 3.8458 -0.7191 -9.6046 37 1 3.1774 -2.4037 -7.9453 38 1 2.7588 -1.7731 -5.6255 39 1 4.1682 -0.8635 -0.6565 40 1 3.4928 -2.4075 -1.2755 41 1 2.1937 -2.7697 0.7152 42 1 3.6741 -2.0285 1.3962 43 1 3.4285 -2.7112 3.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088883034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:56 Heat of formation + Delta-G solvation = 80.640212 kcal Electronic energy + Delta-G solvation = -26990.151818 eV Core-core repulsion = 23229.992576 eV Total energy + Delta-G solvation = -3760.159241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79348 -39.77260 -38.17875 -37.70496 -34.41385 -33.92601 -32.16498 -31.94719 -30.67574 -30.42418 -28.73663 -26.41669 -24.71518 -24.63621 -24.07455 -22.99484 -21.20042 -20.36954 -19.85707 -18.90940 -18.50000 -17.72417 -16.87534 -16.09343 -15.88224 -15.67766 -15.48792 -15.03537 -14.75417 -14.57878 -14.12445 -14.03463 -13.74907 -13.41191 -12.89558 -12.81331 -12.70360 -12.23550 -12.21255 -12.11585 -11.67294 -11.25167 -11.21132 -11.02929 -10.91903 -10.89148 -10.69402 -10.64692 -10.41352 -10.17531 -9.86833 -9.72489 -9.68220 -9.56965 -8.96271 -8.72001 -8.66636 -6.95379 -5.71831 -3.15178 -0.61822 0.28174 1.26772 2.34093 2.81743 2.87487 3.36398 3.41048 3.42201 3.62003 3.62653 3.93286 4.06986 4.18499 4.42433 4.43307 4.58657 4.75271 4.85665 5.05562 5.18445 5.22956 5.33403 5.40372 5.43872 5.51978 5.63740 5.68392 5.78785 5.92427 5.99717 6.02407 6.13254 6.18958 6.22985 6.36370 6.42353 6.48147 6.60210 6.75832 6.96526 7.35604 7.45375 7.55384 7.77869 8.00795 8.24823 8.28000 9.13820 9.74596 10.37408 11.31520 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002628 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.907785 B =10651.104572 C =11144.255522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.037 0.963 4 C 0.134 3.866 5 H 0.097 0.903 6 N -0.700 5.700 7 C 0.563 3.437 8 O -0.524 6.524 9 C -0.104 4.104 10 C 0.046 3.954 11 N -0.223 5.223 12 N -0.189 5.189 13 C 0.059 3.941 14 C -0.082 4.082 15 C -0.096 4.096 16 C -0.095 4.095 17 C -0.105 4.105 18 C -0.025 4.025 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.594 5.594 22 C -0.223 4.223 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.915 3.085 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.399 0.601 34 H 0.177 0.823 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.174 0.826 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.016 0.984 42 H 0.110 0.890 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 4.011 -21.484 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.115 0.885 6 N -0.350 5.350 7 C 0.348 3.652 8 O -0.402 6.402 9 C -0.119 4.119 10 C -0.106 4.106 11 N -0.075 5.075 12 N -0.044 5.044 13 C -0.071 4.071 14 C -0.103 4.103 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.034 4.034 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.351 4.351 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.194 0.806 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.191 0.809 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.128 0.872 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.032 4.601 -21.747 22.252 hybrid contribution -0.490 -0.695 1.469 1.697 sum 0.543 3.906 -20.278 20.658 Atomic orbital electron populations 1.22254 0.97704 1.01525 1.00106 1.21000 0.92712 0.94803 0.86751 0.94573 1.22307 0.97977 0.90638 0.86075 0.88540 1.46020 1.67867 1.14386 1.06685 1.17719 0.78187 0.87036 0.82243 1.90623 1.50046 1.18190 1.81296 1.21233 1.00721 0.95372 0.94584 1.24339 0.95161 0.89972 1.01144 1.73040 1.07797 1.31004 0.95662 1.73602 1.07525 1.14261 1.08968 1.20384 0.99804 0.91094 0.95773 1.20778 0.99357 0.96847 0.93341 1.21132 0.97387 0.92684 1.00423 1.21317 0.96669 1.00412 0.93052 1.21987 0.97001 0.95465 0.97843 1.18705 0.96859 0.95775 0.92053 1.23424 0.96537 0.99405 0.99903 1.21964 0.97424 0.88433 0.89396 1.44468 1.59092 1.28382 1.00008 1.18970 1.27337 1.08396 0.80420 0.90443 1.24792 1.00208 0.97328 0.98113 1.69769 1.38796 1.17942 1.30384 0.86153 0.77682 0.77474 0.84164 1.21186 1.21560 1.21123 0.92499 0.94311 0.92846 0.76500 0.80612 0.83738 0.84513 0.84585 0.80880 0.91873 0.91770 0.96640 0.87202 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.15 37.16 0.34 -2.39 16 2 C 0.16 2.92 3.47 -66.90 -0.23 2.69 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 4 C 0.13 2.24 2.76 -66.04 -0.18 2.06 16 5 H 0.10 1.71 7.42 -51.93 -0.39 1.32 16 6 N -0.70 -9.37 5.17 -52.91 -0.27 -9.64 16 7 C 0.56 7.81 7.76 -12.32 -0.10 7.71 16 8 O -0.52 -8.47 13.39 5.33 0.07 -8.40 16 9 C -0.10 -1.28 5.95 -104.31 -0.62 -1.91 16 10 C 0.05 0.52 10.81 -16.96 -0.18 0.34 16 11 N -0.22 -2.88 11.47 30.73 0.35 -2.52 16 12 N -0.19 -2.45 11.52 32.21 0.37 -2.08 16 13 C 0.06 0.69 6.69 -84.87 -0.57 0.12 16 14 C -0.08 -0.71 10.01 -39.46 -0.39 -1.10 16 15 C -0.10 -0.67 9.94 -39.92 -0.40 -1.06 16 16 C -0.09 -0.77 9.96 -39.84 -0.40 -1.17 16 17 C -0.10 -1.17 9.28 -39.66 -0.37 -1.54 16 18 C -0.02 -0.30 5.77 -106.51 -0.61 -0.92 16 19 C -0.15 -2.85 6.76 -24.58 -0.17 -3.02 16 20 C 0.15 3.56 5.89 -2.53 -0.01 3.55 16 21 N -0.59 -14.16 3.13 -162.52 -0.51 -14.67 16 22 C -0.22 -5.87 9.87 -15.06 -0.15 -6.02 16 23 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 25 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.06 1.03 8.02 -51.93 -0.42 0.62 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 4.34 6.51 -40.82 -0.27 4.08 16 34 H 0.18 1.42 6.56 -52.49 -0.34 1.08 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.17 2.16 5.14 -52.49 -0.27 1.89 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -31.17 353.41 -8.58 -39.75 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.31 Total: 4.26 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -4.14 Total: -2.99 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.50 Total: -54.35 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.17 -8.58 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088883034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.390 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds