Wall clock time and date at job start Tue Mar 31 2020 14:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87515 * 2 1 4 4 C 1.54419 * 110.00586 * 238.90878 * 2 1 3 5 5 H 1.09003 * 110.72673 * 336.66499 * 4 2 1 6 6 N 1.46502 * 110.76005 * 99.96545 * 4 2 1 7 7 C 1.34784 * 120.00058 * 199.94376 * 6 4 2 8 8 O 1.21591 * 119.99799 * 359.97438 * 7 6 4 9 9 C 1.47504 * 119.99910 * 180.02562 * 7 6 4 10 10 C 1.38681 * 120.33946 * 359.97438 * 9 7 6 11 11 C 1.38987 * 120.63308 * 180.02562 * 10 9 7 12 12 C 1.36224 * 121.14217 * 359.97438 * 11 10 9 13 13 C 1.40693 * 120.16910 * 359.97438 * 12 11 10 14 14 N 1.33752 * 120.97142 * 180.02562 * 13 12 11 15 15 C 1.31342 * 119.72250 * 179.01429 * 14 13 12 16 16 C 1.39645 * 120.68152 * 1.03373 * 15 14 13 17 17 N 1.31442 * 120.64404 * 359.28100 * 16 15 14 18 18 C 1.33501 * 119.72268 * 0.02562 * 17 16 15 19 19 C 1.55158 * 102.89630 * 218.32008 * 4 2 1 20 20 C 1.54914 * 101.61377 * 35.50284 * 19 4 2 21 21 N 1.47023 * 109.88265 * 121.01573 * 2 1 3 22 22 C 1.36940 * 125.64842 * 298.47690 * 21 2 1 23 23 H 1.07997 * 119.99801 * 349.86576 * 22 21 2 24 24 C 1.38817 * 119.99970 * 169.86600 * 22 21 2 25 25 N 1.31618 * 119.99610 * 350.47893 * 24 22 21 26 26 Si 1.86791 * 119.99937 * 170.47910 * 24 22 21 27 27 H 1.48502 * 109.47028 * 94.13766 * 26 24 22 28 28 H 1.48497 * 109.47230 * 214.13656 * 26 24 22 29 29 H 1.48506 * 109.47338 * 334.13707 * 26 24 22 30 30 H 1.09002 * 109.46837 * 300.43663 * 1 2 3 31 31 H 1.08991 * 109.47415 * 60.43330 * 1 2 3 32 32 H 1.08998 * 109.47095 * 180.44213 * 1 2 3 33 33 H 0.97005 * 120.00212 * 19.94367 * 6 4 2 34 34 H 1.07994 * 119.68159 * 0.02562 * 10 9 7 35 35 H 1.08001 * 119.43181 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.91595 * 179.97438 * 12 11 10 37 37 H 1.08007 * 119.65743 * 180.36321 * 15 14 13 38 38 H 1.08000 * 119.67887 * 179.30812 * 16 15 14 39 39 H 1.08997 * 111.00685 * 277.40746 * 19 4 2 40 40 H 1.09000 * 111.00155 * 153.59524 * 19 4 2 41 41 H 1.08994 * 110.36624 * 81.81233 * 20 19 4 42 42 H 1.08998 * 110.36103 * 204.13060 * 20 19 4 43 43 H 0.97000 * 119.99533 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0583 -0.7493 -1.2426 5 1 1.3107 -1.4477 -1.6187 6 7 2.4587 0.1960 -2.2877 7 6 2.5622 -0.2172 -3.5665 8 8 2.3237 -1.3747 -3.8525 9 6 2.9659 0.7345 -4.6187 10 6 3.2402 2.0561 -4.3001 11 6 3.6205 2.9581 -5.2868 12 6 3.7349 2.5720 -6.5881 13 6 3.4675 1.2408 -6.9568 14 7 3.5752 0.8442 -8.2296 15 6 3.3385 -0.4091 -8.5434 16 6 2.9544 -1.3283 -7.5649 17 7 2.8361 -0.9596 -6.3088 18 6 3.0849 0.3059 -5.9643 19 6 3.2918 -1.5108 -0.6893 20 6 2.8176 -1.8763 0.7395 21 7 2.0301 -0.7124 1.1849 22 6 1.8025 -0.3538 2.4868 23 1 1.3538 0.6021 2.7130 24 6 2.1487 -1.2190 3.5157 25 7 2.5190 -2.4520 3.2420 26 14 2.0888 -0.6334 5.2884 27 1 0.7754 -0.9890 5.8831 28 1 3.1755 -1.2857 6.0622 29 1 2.2680 0.8403 5.3292 30 1 -0.3633 0.5206 0.8861 31 1 -0.3634 0.5070 -0.8937 32 1 -0.3633 -1.0276 0.0079 33 1 2.6494 1.1193 -2.0595 34 1 3.1573 2.3875 -3.2756 35 1 3.8291 3.9829 -5.0171 36 1 4.0315 3.2895 -7.3388 37 1 3.4315 -0.7295 -9.5707 38 1 2.7530 -2.3523 -7.8429 39 1 4.1682 -0.8635 -0.6565 40 1 3.4927 -2.4074 -1.2757 41 1 2.1937 -2.7697 0.7151 42 1 3.6742 -2.0286 1.3960 43 1 2.7612 -3.0565 3.9610 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088939147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:46 Heat of formation + Delta-G solvation = 72.388358 kcal Electronic energy + Delta-G solvation = -26986.421464 eV Core-core repulsion = 23225.904395 eV Total energy + Delta-G solvation = -3760.517069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72233 -39.63463 -37.81737 -37.22122 -34.90460 -34.02653 -32.19017 -31.12602 -30.93057 -30.34614 -28.54328 -25.80975 -25.12973 -24.33504 -23.99176 -23.25557 -20.68346 -20.20762 -19.74556 -19.01637 -18.43085 -17.17457 -16.72122 -16.50589 -15.82666 -15.46105 -15.31131 -14.81916 -14.54858 -14.38130 -14.31383 -13.90832 -13.79483 -13.33906 -12.77845 -12.54101 -12.26495 -12.15951 -12.08986 -12.04195 -11.82234 -11.77566 -11.54045 -11.10738 -10.92732 -10.76833 -10.54128 -10.37803 -10.06200 -9.87282 -9.82262 -9.63624 -9.33209 -9.11106 -8.93951 -8.64344 -8.53459 -6.84241 -5.75238 -3.08882 -0.29349 0.23683 1.42766 2.33613 3.19112 3.20945 3.38690 3.44516 3.46335 3.69271 3.83949 3.86395 4.02453 4.35853 4.45502 4.49968 4.64505 4.75386 4.89344 5.01243 5.24373 5.39598 5.42373 5.46825 5.52966 5.57025 5.60982 5.79931 5.82053 5.86188 6.12980 6.24250 6.24995 6.32615 6.35885 6.53249 6.62796 6.71702 6.89911 6.99593 7.13217 7.49556 7.50480 7.59166 7.73165 7.78125 8.24282 8.44027 9.17451 9.79536 10.46439 11.37393 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.002633 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.986754 B =10633.221753 C =11154.769583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.139 3.861 5 H 0.094 0.906 6 N -0.714 5.714 7 C 0.549 3.451 8 O -0.499 6.499 9 C -0.091 4.091 10 C -0.063 4.063 11 C -0.105 4.105 12 C -0.063 4.063 13 C 0.070 3.930 14 N -0.428 5.428 15 C 0.075 3.925 16 C 0.074 3.926 17 N -0.385 5.385 18 C 0.112 3.888 19 C -0.154 4.154 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.076 0.924 24 C -0.006 4.006 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.394 0.606 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 9.558 -22.198 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.052 0.948 4 C 0.035 3.965 5 H 0.112 0.888 6 N -0.366 5.366 7 C 0.334 3.666 8 O -0.373 6.373 9 C -0.095 4.095 10 C -0.084 4.084 11 C -0.125 4.125 12 C -0.083 4.083 13 C -0.054 4.054 14 N -0.142 5.142 15 C -0.100 4.100 16 C -0.101 4.101 17 N -0.098 5.098 18 C -0.014 4.014 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.203 4.203 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.229 0.771 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.192 0.808 38 H 0.193 0.807 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.521 8.753 -21.994 23.806 hybrid contribution 0.017 0.625 0.981 1.164 sum 2.538 9.378 -21.013 23.150 Atomic orbital electron populations 1.22233 0.97798 1.01524 0.99874 1.21021 0.92578 0.94747 0.86887 0.94775 1.22135 0.97478 0.90743 0.86176 0.88840 1.46014 1.69753 1.13900 1.06914 1.17844 0.78966 0.87714 0.82071 1.90853 1.47387 1.17529 1.81536 1.20049 1.02845 0.94398 0.92246 1.21630 0.94471 0.91699 1.00590 1.20952 0.98737 1.00556 0.92239 1.20975 0.96987 0.93390 0.96940 1.19538 1.00477 0.95525 0.89862 1.68700 1.11097 1.17105 1.17275 1.24117 0.94712 0.89429 1.01791 1.24302 0.94866 1.01895 0.89030 1.69054 1.08094 1.14695 1.17934 1.19324 0.98000 0.90449 0.93639 1.23397 0.96778 0.99580 0.99639 1.21408 0.95578 0.89438 0.88667 1.44493 1.58206 1.29138 1.00081 1.18950 1.36264 0.99926 0.80421 0.90631 1.24830 1.02088 0.95390 0.97979 1.69962 1.51039 1.04390 1.30843 0.86145 0.77275 0.77819 0.84736 1.21640 1.21646 1.20639 0.92616 0.94459 0.92867 0.77075 0.83987 0.83868 0.83931 0.80759 0.80697 0.92075 0.91747 0.95280 0.91054 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.15 37.16 0.34 -2.56 16 2 C 0.16 3.08 3.47 -66.90 -0.23 2.85 16 3 H 0.03 0.64 7.69 -51.93 -0.40 0.24 16 4 C 0.14 2.54 2.76 -66.04 -0.18 2.35 16 5 H 0.09 1.86 7.42 -51.93 -0.39 1.47 16 6 N -0.71 -10.58 5.16 -53.03 -0.27 -10.85 16 7 C 0.55 8.80 7.76 -12.48 -0.10 8.70 16 8 O -0.50 -9.87 14.92 5.29 0.08 -9.79 16 9 C -0.09 -1.19 5.90 -104.63 -0.62 -1.81 16 10 C -0.06 -0.57 9.52 -39.14 -0.37 -0.95 16 11 C -0.10 -0.76 9.93 -40.03 -0.40 -1.16 16 12 C -0.06 -0.55 9.97 -39.38 -0.39 -0.94 16 13 C 0.07 0.81 6.59 -84.82 -0.56 0.25 16 14 N -0.43 -4.60 10.46 -10.82 -0.11 -4.71 16 15 C 0.08 0.63 11.21 -17.24 -0.19 0.44 16 16 C 0.07 0.74 11.22 -17.19 -0.19 0.55 16 17 N -0.38 -5.56 8.56 -10.59 -0.09 -5.66 16 18 C 0.11 1.53 6.60 -84.53 -0.56 0.97 16 19 C -0.15 -3.06 6.76 -24.58 -0.17 -3.23 16 20 C 0.17 4.22 5.42 -2.53 -0.01 4.21 16 21 N -0.59 -14.65 3.13 -162.52 -0.51 -15.16 16 22 C -0.23 -6.13 9.83 -15.06 -0.15 -6.28 16 23 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 24 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 25 N -0.92 -26.65 10.69 55.49 0.59 -26.06 16 26 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.05 1.08 8.02 -51.93 -0.42 0.66 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.39 4.64 6.34 -40.82 -0.26 4.38 16 34 H 0.14 0.94 6.37 -52.49 -0.33 0.61 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.18 0.71 8.06 -52.48 -0.42 0.28 16 38 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 42 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -35.26 357.11 -9.34 -44.59 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.50 Total: 2.38 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.88 Total: 3.15 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.39 Total: -62.44 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.26 -9.34 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088939147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.981 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds