Wall clock time and date at job start Tue Mar 31 2020 14:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46524 * 2 1 4 4 C 1.53762 * 109.60676 * 120.24997 * 2 1 3 5 5 S 1.81738 * 108.75412 * 177.75003 * 4 2 1 6 6 C 1.81748 * 102.30545 * 305.34484 * 5 4 2 7 7 C 1.53237 * 108.79460 * 54.53939 * 6 5 4 8 8 N 1.46368 * 109.49361 * 302.34396 * 7 6 5 9 9 C 1.34784 * 119.64623 * 245.09313 * 8 7 6 10 10 O 1.21351 * 119.99500 * 185.30146 * 9 8 7 11 11 C 1.49439 * 120.00090 * 5.30507 * 9 8 7 12 12 O 1.21352 * 120.00709 * 84.54151 * 11 9 8 13 13 N 1.34779 * 119.99982 * 264.54129 * 11 9 8 14 14 C 1.46925 * 120.63225 * 355.02961 * 13 11 9 15 15 C 1.53191 * 108.77547 * 126.42969 * 14 13 11 16 16 C 1.53035 * 109.31352 * 54.64257 * 15 14 13 17 17 C 1.53053 * 109.53491 * 298.63048 * 16 15 14 18 18 H 1.09000 * 109.49289 * 301.38288 * 17 16 15 19 19 C 1.50696 * 109.49676 * 181.31619 * 17 16 15 20 20 H 1.08004 * 120.00138 * 335.20226 * 19 17 16 21 21 C 1.37874 * 119.99979 * 155.20660 * 19 17 16 22 22 N 1.31516 * 119.99710 * 355.13389 * 21 19 17 23 23 Si 1.86800 * 120.00114 * 175.13800 * 21 19 17 24 24 H 1.48498 * 109.47115 * 90.00040 * 23 21 19 25 25 H 1.48500 * 109.47067 * 329.99535 * 23 21 19 26 26 H 1.48501 * 109.47031 * 209.99726 * 23 21 19 27 27 C 1.46930 * 120.60441 * 175.04779 * 13 11 9 28 28 H 1.09008 * 109.47083 * 183.26165 * 1 2 3 29 29 H 1.08997 * 109.47383 * 303.26571 * 1 2 3 30 30 H 1.09001 * 109.46900 * 63.26994 * 1 2 3 31 31 H 1.09003 * 109.69907 * 57.91091 * 4 2 1 32 32 H 1.08997 * 109.62211 * 297.53980 * 4 2 1 33 33 H 1.09000 * 109.58002 * 294.74616 * 6 5 4 34 34 H 1.08997 * 109.69203 * 174.39902 * 6 5 4 35 35 H 1.09010 * 109.46291 * 182.33774 * 7 6 5 36 36 H 1.09006 * 109.47020 * 62.35650 * 7 6 5 37 37 H 1.09006 * 109.58267 * 6.64747 * 14 13 11 38 38 H 1.08991 * 109.59003 * 246.22356 * 14 13 11 39 39 H 1.09002 * 109.49902 * 294.68529 * 15 14 13 40 40 H 1.09008 * 109.52281 * 174.60510 * 15 14 13 41 41 H 1.09000 * 109.46466 * 178.61433 * 16 15 14 42 42 H 1.08994 * 109.46316 * 58.64733 * 16 15 14 43 43 H 0.96999 * 120.00134 * 5.15593 * 22 21 19 44 44 H 1.09005 * 109.55754 * 113.76547 * 27 13 11 45 45 H 1.08994 * 109.62070 * 353.33957 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 1.2512 5 16 3.8619 -0.7747 1.1942 6 6 4.1799 -1.5379 -0.4243 7 6 3.4484 -0.7315 -1.5026 8 7 2.0179 -0.6899 -1.1952 9 6 1.1401 -1.2886 -2.0245 10 8 -0.0523 -1.1768 -1.8290 11 6 1.6353 -2.0901 -3.1845 12 8 1.9486 -3.2522 -3.0297 13 7 1.7339 -1.5223 -4.4029 14 6 1.2574 -0.1512 -4.6306 15 6 2.3916 0.6677 -5.2549 16 6 2.8930 -0.0408 -6.5153 17 6 3.4416 -1.4203 -6.1431 18 1 4.2497 -1.3074 -5.4204 19 6 3.9646 -2.1041 -7.3799 20 1 3.5797 -1.8312 -8.3515 21 6 4.9343 -3.0781 -7.2713 22 7 5.4715 -3.3434 -6.1005 23 14 5.4852 -4.0208 -8.7869 24 1 6.6222 -3.3104 -9.4256 25 1 4.3574 -4.1150 -9.7483 26 1 5.9141 -5.3865 -8.3917 27 6 2.3198 -2.2632 -5.5283 28 1 -0.3634 -1.0261 0.0585 29 1 -0.3634 0.5637 0.8592 30 1 -0.3633 0.4622 -0.9179 31 1 1.6557 -1.7473 1.2703 32 1 1.7216 -0.1973 2.1453 33 1 3.8121 -2.5640 -0.4229 34 1 5.2506 -1.5338 -0.6283 35 1 3.5978 -1.2041 -2.4735 36 1 3.8442 0.2838 -1.5282 37 1 0.9637 0.2960 -3.6809 38 1 0.4037 -0.1689 -5.3080 39 1 3.2092 0.7607 -4.5401 40 1 2.0231 1.6595 -5.5173 41 1 3.6835 0.5523 -6.9752 42 1 2.0690 -0.1556 -7.2195 43 1 5.1340 -2.9079 -5.3021 44 1 1.5526 -2.4536 -6.2788 45 1 2.7273 -3.2090 -5.1713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118447536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:21 Heat of formation + Delta-G solvation = -71.306305 kcal Electronic energy + Delta-G solvation = -27618.812091 eV Core-core repulsion = 23955.215155 eV Total energy + Delta-G solvation = -3663.596937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48166 -40.54014 -38.68591 -37.90568 -35.65270 -34.43875 -33.55978 -31.80571 -31.43690 -28.45456 -27.59762 -26.61545 -25.20616 -24.55151 -23.69556 -22.75127 -21.35564 -19.96642 -19.13683 -18.57993 -18.18497 -17.83862 -17.32038 -16.64990 -16.35352 -15.97413 -15.81395 -15.65090 -15.58553 -15.29936 -15.05473 -14.87842 -14.70099 -14.47550 -14.06748 -13.97363 -13.92014 -13.49301 -13.37074 -13.30699 -13.17337 -12.68761 -12.47879 -12.35009 -12.24554 -12.09627 -11.97773 -11.93141 -11.77746 -11.16821 -11.07183 -10.81157 -10.44489 -10.24235 -10.14149 -9.81678 -8.82200 -8.60910 -6.35087 0.54556 0.80880 0.87475 1.29622 1.37191 1.53619 1.61776 1.78304 2.05495 2.56707 2.89440 3.19700 3.42066 3.55262 3.75441 3.80251 3.87854 3.95555 4.02841 4.04343 4.09146 4.33924 4.34806 4.41449 4.46387 4.57516 4.58284 4.61707 4.62824 4.74103 4.80982 4.91287 4.98186 5.02190 5.05150 5.13460 5.24287 5.42635 5.52272 5.59659 5.71675 6.07031 6.08001 6.22037 6.48379 6.59088 6.68040 7.45748 8.76893 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.004024 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.704749 B = 6956.705302 C = 7713.339031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.141 3.859 3 H 0.122 0.878 4 C -0.095 4.095 5 S -0.250 6.250 6 C -0.101 4.101 7 C 0.108 3.892 8 N -0.589 5.589 9 C 0.528 3.472 10 O -0.516 6.516 11 C 0.495 3.505 12 O -0.565 6.565 13 N -0.586 5.586 14 C 0.106 3.894 15 C -0.122 4.122 16 C -0.100 4.100 17 C 0.023 3.977 18 H 0.008 0.992 19 C -0.604 4.604 20 H 0.053 0.947 21 C -0.027 4.027 22 N -0.934 5.934 23 Si 1.110 2.890 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.291 1.291 27 C 0.129 3.871 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.258 0.742 44 H 0.059 0.941 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 13.066 12.227 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.038 3.962 3 H 0.139 0.861 4 C -0.244 4.244 5 S -0.022 6.022 6 C -0.250 4.250 7 C -0.017 4.017 8 N -0.323 5.323 9 C 0.311 3.689 10 O -0.392 6.392 11 C 0.278 3.722 12 O -0.444 6.444 13 N -0.318 5.318 14 C -0.016 4.016 15 C -0.160 4.160 16 C -0.138 4.138 17 C 0.004 3.996 18 H 0.026 0.974 19 C -0.643 4.643 20 H 0.071 0.929 21 C -0.226 4.226 22 N -0.571 5.571 23 Si 0.932 3.068 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.217 1.217 27 C 0.007 3.993 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.902 11.747 12.680 18.264 hybrid contribution -1.612 -0.250 -0.470 1.697 sum -7.514 11.497 12.209 18.377 Atomic orbital electron populations 1.22189 0.91218 1.02643 1.02730 1.21899 0.96717 0.96537 0.81015 0.86068 1.24170 0.92802 1.04707 1.02678 1.86847 1.08970 1.81182 1.25226 1.23806 1.05784 1.01106 0.94307 1.21960 0.78762 1.03259 0.97694 1.48076 1.07070 1.52593 1.24606 1.20092 0.86839 0.78547 0.83467 1.90876 1.15737 1.59484 1.73085 1.20908 0.78426 0.87765 0.85100 1.90786 1.50689 1.18146 1.84774 1.48617 1.58010 1.16538 1.08683 1.22037 0.97918 0.79424 1.02204 1.21922 0.97457 0.99414 0.97238 1.21458 0.99827 0.95443 0.97033 1.19117 0.92023 0.93423 0.95083 0.97417 1.22273 1.25166 1.23109 0.93705 0.92885 1.27152 0.94266 0.96811 1.04359 1.70897 1.41486 1.45047 0.99636 0.83020 0.76701 0.75171 0.71858 1.19728 1.19413 1.21725 1.22046 0.96152 0.95634 0.85481 0.93222 0.90064 0.91411 0.90673 0.83367 0.91201 0.85069 0.91110 0.85874 0.89197 0.89524 0.92007 0.87440 0.92586 0.92485 0.93170 0.92305 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.56 71.98 0.54 -1.86 16 2 C 0.14 2.51 3.34 45.27 0.15 2.66 16 3 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.09 -1.59 5.98 72.24 0.43 -1.16 16 5 S -0.25 -5.07 22.29 -56.49 -1.26 -6.32 16 6 C -0.10 -2.39 6.67 72.06 0.48 -1.91 16 7 C 0.11 2.58 6.12 86.48 0.53 3.11 16 8 N -0.59 -14.39 2.78 -798.11 -2.22 -16.61 16 9 C 0.53 16.67 5.37 87.26 0.47 17.14 16 10 O -0.52 -16.94 12.20 -3.25 -0.04 -16.98 16 11 C 0.49 19.40 5.37 87.26 0.47 19.86 16 12 O -0.56 -27.20 16.53 -3.25 -0.05 -27.25 16 13 N -0.59 -21.71 2.97 -820.49 -2.44 -24.15 16 14 C 0.11 2.90 6.36 86.36 0.55 3.44 16 15 C -0.12 -3.19 6.08 30.67 0.19 -3.01 16 16 C -0.10 -3.52 5.15 30.62 0.16 -3.36 16 17 C 0.02 1.06 1.98 -11.46 -0.02 1.04 16 18 H 0.01 0.39 6.67 -2.39 -0.02 0.38 16 19 C -0.60 -31.79 8.32 25.60 0.21 -31.58 16 20 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 21 C -0.03 -1.46 5.45 84.65 0.46 -1.00 16 22 N -0.93 -55.96 13.63 21.45 0.29 -55.66 16 23 Si 1.11 49.12 29.91 68.60 2.05 51.18 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.13 5.81 5.68 86.36 0.49 6.30 16 28 H 0.05 1.19 6.71 -2.38 -0.02 1.18 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.45 6.63 -2.39 -0.02 1.44 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.15 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 2.18 6.22 -2.38 -0.01 2.17 16 36 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.09 2.15 6.28 -2.38 -0.01 2.14 16 38 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.11 2.03 8.14 -2.38 -0.02 2.02 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.26 15.67 6.66 -92.71 -0.62 15.05 16 44 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 45 H 0.04 2.27 7.04 -2.39 -0.02 2.26 16 Total: -1.00 -69.74 360.91 2.58 -67.17 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.13 Total: 18.96 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.11 Total: 9.68 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.37 Total: -96.42 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.09 Total: -44.23 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.18 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.26 Total: -6.32 kcal Total: -69.74 2.58 -67.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118447536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.139 kcal (2) G-P(sol) polarization free energy of solvation -69.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds