Wall clock time and date at job start Tue Mar 31 2020 14:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46655 * 2 1 4 4 C 1.53232 * 109.47050 * 240.00142 * 2 1 3 5 5 S 1.81737 * 108.80078 * 182.34141 * 4 2 1 6 6 C 1.81735 * 102.30662 * 54.54096 * 5 4 2 7 7 C 1.53248 * 108.91265 * 305.39184 * 6 5 4 8 8 N 1.46380 * 109.46485 * 119.98652 * 2 1 3 9 9 C 1.34773 * 119.65007 * 5.09331 * 8 2 1 10 10 O 1.21348 * 119.99952 * 8.01034 * 9 8 2 11 11 C 1.49451 * 120.00279 * 188.01381 * 9 8 2 12 12 O 1.21347 * 119.99876 * 8.64232 * 11 9 8 13 13 N 1.34776 * 120.00267 * 188.64157 * 11 9 8 14 14 C 1.46928 * 120.62910 * 357.71562 * 13 11 9 15 15 C 1.53193 * 108.77650 * 126.36658 * 14 13 11 16 16 C 1.53042 * 109.31043 * 54.63502 * 15 14 13 17 17 C 1.53035 * 109.53926 * 298.63366 * 16 15 14 18 18 H 1.09004 * 109.50210 * 301.38672 * 17 16 15 19 19 C 1.50697 * 109.49823 * 181.31898 * 17 16 15 20 20 H 1.07991 * 120.00111 * 359.97438 * 19 17 16 21 21 C 1.37877 * 120.00023 * 180.02562 * 19 17 16 22 22 N 1.31515 * 120.00006 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00137 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47076 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46966 * 119.99449 * 23 21 19 26 26 H 1.48502 * 109.46927 * 239.99459 * 23 21 19 27 27 C 1.46924 * 120.63160 * 177.43453 * 13 11 9 28 28 H 1.08998 * 109.47256 * 172.65916 * 1 2 3 29 29 H 1.09000 * 109.47430 * 292.66232 * 1 2 3 30 30 H 1.09000 * 109.46977 * 52.65837 * 1 2 3 31 31 H 1.09003 * 109.58050 * 62.54968 * 4 2 1 32 32 H 1.08999 * 109.69777 * 302.20956 * 4 2 1 33 33 H 1.09003 * 109.58665 * 65.25259 * 6 5 4 34 34 H 1.09004 * 109.58318 * 185.53025 * 6 5 4 35 35 H 1.08997 * 109.46845 * 177.72891 * 7 6 5 36 36 H 1.08995 * 109.46721 * 297.71766 * 7 6 5 37 37 H 1.08993 * 109.58804 * 246.15696 * 14 13 11 38 38 H 1.09002 * 109.58869 * 6.43520 * 14 13 11 39 39 H 1.09000 * 109.49661 * 174.58498 * 15 14 13 40 40 H 1.08999 * 109.49940 * 294.64986 * 15 14 13 41 41 H 1.08993 * 109.45910 * 58.66008 * 16 15 14 42 42 H 1.09003 * 109.45793 * 178.61329 * 16 15 14 43 43 H 0.97002 * 120.00011 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.58422 * 353.41838 * 27 13 11 45 45 H 1.08996 * 109.58501 * 113.84886 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0408 -0.7223 -1.2512 5 16 3.8567 -0.7728 -1.1980 6 6 4.1757 -1.5417 0.4174 7 6 3.4513 -0.7373 1.5022 8 7 2.0178 -0.6898 1.1954 9 6 1.1400 -1.2883 2.0246 10 8 -0.0278 -1.3808 1.7079 11 6 1.6047 -1.8382 3.3343 12 8 2.7317 -1.6103 3.7224 13 7 0.7722 -2.5871 4.0843 14 6 -0.6107 -2.8301 3.6518 15 6 -0.8659 -4.3406 3.6415 16 6 -0.5263 -4.9206 5.0164 17 6 0.9546 -4.6830 5.3205 18 1 1.5644 -5.1500 4.5470 19 6 1.2956 -5.2829 6.6602 20 1 0.5325 -5.7834 7.2377 21 6 2.5815 -5.1920 7.1491 22 7 3.5107 -4.5821 6.4461 23 14 3.0040 -5.9350 8.8101 24 1 1.7908 -6.5595 9.3961 25 1 4.0580 -6.9667 8.6372 26 1 3.4990 -4.8689 9.7178 27 6 1.2322 -3.1810 5.3470 28 1 -0.3634 -1.0192 -0.1313 29 1 -0.3634 0.3960 0.9483 30 1 -0.3633 0.6234 -0.8170 31 1 1.7162 -0.1841 -2.1418 32 1 1.6475 -1.7386 -1.2749 33 1 3.8049 -2.5667 0.4139 34 1 5.2473 -1.5416 0.6169 35 1 3.6034 -1.2140 2.4705 36 1 3.8501 0.2767 1.5298 37 1 -1.3003 -2.3477 4.3444 38 1 -0.7567 -2.4259 2.6501 39 1 -1.9152 -4.5307 3.4156 40 1 -0.2396 -4.8103 2.8831 41 1 -1.1360 -4.4329 5.7770 42 1 -0.7304 -5.9913 5.0193 43 1 4.4155 -4.5184 6.7899 44 1 2.3026 -3.0106 5.4624 45 1 0.6959 -2.7279 6.1807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118447538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:27 Heat of formation + Delta-G solvation = -16.886533 kcal Electronic energy + Delta-G solvation = -27401.533454 eV Core-core repulsion = 23740.296336 eV Total energy + Delta-G solvation = -3661.237118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18200 -38.88405 -37.44581 -36.43532 -33.38357 -33.22856 -31.86127 -30.38539 -29.84021 -27.51333 -26.01944 -25.10694 -23.59582 -23.36729 -21.91120 -21.36930 -19.66649 -18.69747 -17.03118 -16.93163 -16.50620 -16.28106 -15.81224 -15.62340 -15.30623 -14.69150 -14.65005 -14.37062 -14.02125 -13.88797 -13.48041 -13.29134 -13.04196 -12.85260 -12.71509 -12.60296 -12.44057 -12.31619 -12.04173 -11.83053 -11.50079 -11.45403 -11.06877 -10.97094 -10.55278 -10.49658 -10.31571 -10.21122 -10.03620 -9.49150 -9.20371 -9.11829 -9.06391 -8.52866 -8.26759 -7.95666 -7.78521 -6.08949 -4.16899 1.54107 1.61396 2.32722 2.44120 3.25237 3.34107 3.37242 3.44425 3.64642 4.33996 4.38373 4.46110 4.67815 4.86004 4.92358 4.99254 5.16540 5.21845 5.26276 5.43829 5.53733 5.58936 5.59513 5.72908 5.81630 5.90290 5.98376 6.06135 6.17104 6.29540 6.40324 6.48591 6.52850 6.63341 6.79298 6.90633 6.96894 7.03248 7.15632 7.51111 7.72540 7.81783 7.89315 8.05003 8.26837 8.44979 8.87366 9.49241 10.96748 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.003778 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.236677 B = 7409.363478 C = 8461.282449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.139 3.861 3 H 0.090 0.910 4 C -0.093 4.093 5 S -0.276 6.276 6 C -0.092 4.092 7 C 0.044 3.956 8 N -0.585 5.585 9 C 0.513 3.487 10 O -0.504 6.504 11 C 0.493 3.507 12 O -0.513 6.513 13 N -0.558 5.558 14 C 0.047 3.953 15 C -0.131 4.131 16 C -0.113 4.113 17 C 0.041 3.959 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.883 5.883 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.105 3.895 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.180 0.820 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.263 0.737 44 H 0.126 0.874 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 8.939 -13.400 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.034 3.966 3 H 0.107 0.893 4 C -0.242 4.242 5 S -0.049 6.049 6 C -0.241 4.241 7 C -0.078 4.078 8 N -0.318 5.318 9 C 0.298 3.702 10 O -0.382 6.382 11 C 0.275 3.725 12 O -0.394 6.394 13 N -0.287 5.287 14 C -0.074 4.074 15 C -0.169 4.169 16 C -0.151 4.151 17 C 0.022 3.978 18 H 0.047 0.953 19 C -0.557 4.557 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.015 4.015 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.195 0.805 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.162 0.838 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.132 9.387 -14.124 17.246 hybrid contribution -0.430 -0.859 1.661 1.918 sum -3.562 8.528 -12.463 15.516 Atomic orbital electron populations 1.22319 0.91508 1.03899 1.01916 1.21474 0.96580 0.95579 0.82980 0.89255 1.23944 0.93803 1.04896 1.01596 1.86806 1.08086 1.82022 1.27940 1.23939 1.05189 1.01974 0.92953 1.23598 0.77544 1.02735 1.03952 1.48000 1.07911 1.52642 1.23241 1.20680 0.85674 0.78256 0.85578 1.90374 1.17652 1.55314 1.74839 1.19886 0.85917 0.81283 0.85389 1.90242 1.18675 1.59672 1.70774 1.48529 1.12038 1.45391 1.22774 1.23202 0.81486 0.97104 1.05617 1.21911 1.00266 0.95370 0.99333 1.21665 0.99650 0.99487 0.94319 1.18895 0.90458 0.90960 0.97526 0.95292 1.21123 0.95050 1.36265 1.03293 0.92163 1.25048 0.96407 0.95026 0.97509 1.69865 1.02552 1.42172 1.37475 0.86512 0.78435 0.79005 0.83941 1.19751 1.20951 1.20917 1.22480 1.03996 0.95271 0.79713 0.89894 0.90860 0.93440 0.86797 0.89380 0.89536 0.86376 0.80505 0.90190 0.92217 0.83836 0.92119 0.92515 0.93159 0.93028 0.92645 0.85654 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.57 37.16 0.28 -1.16 16 2 C 0.14 1.49 3.32 -67.87 -0.23 1.26 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.09 -0.93 5.94 37.28 0.22 -0.71 16 5 S -0.28 -3.18 22.30 -107.50 -2.40 -5.57 16 6 C -0.09 -1.09 6.65 37.29 0.25 -0.84 16 7 C 0.04 0.57 6.03 -3.82 -0.02 0.55 16 8 N -0.58 -7.75 2.79 -166.28 -0.46 -8.21 16 9 C 0.51 7.96 7.39 -11.59 -0.09 7.88 16 10 O -0.50 -7.62 8.40 5.50 0.05 -7.58 16 11 C 0.49 9.25 7.62 -11.58 -0.09 9.16 16 12 O -0.51 -10.57 12.50 5.50 0.07 -10.50 16 13 N -0.56 -10.94 2.98 -173.54 -0.52 -11.46 16 14 C 0.05 0.79 6.23 -3.71 -0.02 0.77 16 15 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 16 C -0.11 -2.25 5.11 -26.69 -0.14 -2.39 16 17 C 0.04 0.98 2.24 -91.88 -0.21 0.77 16 18 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.52 -13.65 8.56 -34.44 -0.29 -13.95 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 22 N -0.88 -24.55 11.39 55.43 0.63 -23.92 16 23 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.11 2.43 5.37 -3.93 -0.02 2.41 16 28 H 0.08 0.97 6.60 -51.93 -0.34 0.63 16 29 H 0.07 0.88 6.74 -51.93 -0.35 0.53 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.18 2.82 3.73 -57.08 -0.21 2.61 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.15 2.30 3.80 -56.90 -0.22 2.08 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.13 3.31 5.13 -51.93 -0.27 3.04 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -27.62 350.68 -9.82 -37.44 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.85 Total: 5.89 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.61 Total: 2.98 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.35 Total: -43.59 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.11 Total: -18.07 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.40 Total: -5.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.62 -9.82 -37.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118447538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.556 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds