Wall clock time and date at job start Tue Mar 31 2020 14:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46655 * 2 1 4 4 C 1.53232 * 109.47050 * 240.00142 * 2 1 3 5 5 S 1.81737 * 108.80078 * 182.34141 * 4 2 1 6 6 C 1.81735 * 102.30662 * 54.54096 * 5 4 2 7 7 C 1.53248 * 108.91265 * 305.39184 * 6 5 4 8 8 N 1.46380 * 109.46485 * 119.98652 * 2 1 3 9 9 C 1.34773 * 119.65007 * 5.09331 * 8 2 1 10 10 O 1.21348 * 119.99952 * 8.01034 * 9 8 2 11 11 C 1.49451 * 120.00279 * 188.01381 * 9 8 2 12 12 O 1.21347 * 119.99876 * 8.64232 * 11 9 8 13 13 N 1.34776 * 120.00267 * 188.64157 * 11 9 8 14 14 C 1.46928 * 120.62910 * 357.71562 * 13 11 9 15 15 C 1.53193 * 108.77650 * 126.36658 * 14 13 11 16 16 C 1.53042 * 109.31043 * 54.63502 * 15 14 13 17 17 C 1.53035 * 109.53926 * 298.63366 * 16 15 14 18 18 H 1.09004 * 109.50210 * 301.38672 * 17 16 15 19 19 C 1.50697 * 109.49823 * 181.31898 * 17 16 15 20 20 H 1.07991 * 120.00111 * 359.97438 * 19 17 16 21 21 C 1.37877 * 120.00023 * 180.02562 * 19 17 16 22 22 N 1.31515 * 120.00006 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00137 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47076 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46966 * 119.99449 * 23 21 19 26 26 H 1.48502 * 109.46927 * 239.99459 * 23 21 19 27 27 C 1.46924 * 120.63160 * 177.43453 * 13 11 9 28 28 H 1.08998 * 109.47256 * 172.65916 * 1 2 3 29 29 H 1.09000 * 109.47430 * 292.66232 * 1 2 3 30 30 H 1.09000 * 109.46977 * 52.65837 * 1 2 3 31 31 H 1.09003 * 109.58050 * 62.54968 * 4 2 1 32 32 H 1.08999 * 109.69777 * 302.20956 * 4 2 1 33 33 H 1.09003 * 109.58665 * 65.25259 * 6 5 4 34 34 H 1.09004 * 109.58318 * 185.53025 * 6 5 4 35 35 H 1.08997 * 109.46845 * 177.72891 * 7 6 5 36 36 H 1.08995 * 109.46721 * 297.71766 * 7 6 5 37 37 H 1.08993 * 109.58804 * 246.15696 * 14 13 11 38 38 H 1.09002 * 109.58869 * 6.43520 * 14 13 11 39 39 H 1.09000 * 109.49661 * 174.58498 * 15 14 13 40 40 H 1.08999 * 109.49940 * 294.64986 * 15 14 13 41 41 H 1.08993 * 109.45910 * 58.66008 * 16 15 14 42 42 H 1.09003 * 109.45793 * 178.61329 * 16 15 14 43 43 H 0.97002 * 120.00011 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.58422 * 353.41838 * 27 13 11 45 45 H 1.08996 * 109.58501 * 113.84886 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0408 -0.7223 -1.2512 5 16 3.8567 -0.7728 -1.1980 6 6 4.1757 -1.5417 0.4174 7 6 3.4513 -0.7373 1.5022 8 7 2.0178 -0.6898 1.1954 9 6 1.1400 -1.2883 2.0246 10 8 -0.0278 -1.3808 1.7079 11 6 1.6047 -1.8382 3.3343 12 8 2.7317 -1.6103 3.7224 13 7 0.7722 -2.5871 4.0843 14 6 -0.6107 -2.8301 3.6518 15 6 -0.8659 -4.3406 3.6415 16 6 -0.5263 -4.9206 5.0164 17 6 0.9546 -4.6830 5.3205 18 1 1.5644 -5.1500 4.5470 19 6 1.2956 -5.2829 6.6602 20 1 0.5325 -5.7834 7.2377 21 6 2.5815 -5.1920 7.1491 22 7 3.5107 -4.5821 6.4461 23 14 3.0040 -5.9350 8.8101 24 1 1.7908 -6.5595 9.3961 25 1 4.0580 -6.9667 8.6372 26 1 3.4990 -4.8689 9.7178 27 6 1.2322 -3.1810 5.3470 28 1 -0.3634 -1.0192 -0.1313 29 1 -0.3634 0.3960 0.9483 30 1 -0.3633 0.6234 -0.8170 31 1 1.7162 -0.1841 -2.1418 32 1 1.6475 -1.7386 -1.2749 33 1 3.8049 -2.5667 0.4139 34 1 5.2473 -1.5416 0.6169 35 1 3.6034 -1.2140 2.4705 36 1 3.8501 0.2767 1.5298 37 1 -1.3003 -2.3477 4.3444 38 1 -0.7567 -2.4259 2.6501 39 1 -1.9152 -4.5307 3.4156 40 1 -0.2396 -4.8103 2.8831 41 1 -1.1360 -4.4329 5.7770 42 1 -0.7304 -5.9913 5.0193 43 1 4.4155 -4.5184 6.7899 44 1 2.3026 -3.0106 5.4624 45 1 0.6959 -2.7279 6.1807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118447538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:26 Heat of formation + Delta-G solvation = -32.260609 kcal Electronic energy + Delta-G solvation = -27402.200124 eV Core-core repulsion = 23740.296336 eV Total energy + Delta-G solvation = -3661.903788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45570 -40.28837 -38.87625 -37.72216 -35.22318 -34.21091 -33.50222 -31.61134 -31.42658 -28.39333 -27.56933 -26.86146 -24.91943 -24.44045 -23.50898 -22.63233 -21.10516 -20.17753 -18.64037 -18.02515 -17.88600 -17.77394 -17.15686 -16.77668 -16.53515 -16.45984 -15.82553 -15.58912 -15.50798 -15.16726 -14.65170 -14.62625 -14.59898 -14.30065 -14.02449 -13.81885 -13.66582 -13.47963 -13.37410 -13.07172 -12.90935 -12.66178 -12.50528 -12.38028 -12.29966 -12.22874 -11.84045 -11.72671 -11.26602 -11.13240 -10.99915 -10.62190 -10.54576 -10.11223 -9.59651 -9.50981 -8.73717 -8.13074 -6.29002 0.26198 0.65894 1.21111 1.40745 1.42593 1.42983 1.53994 2.06205 2.31741 2.42555 3.04311 3.16415 3.56416 3.73484 3.90558 3.98770 4.09376 4.12380 4.16681 4.26418 4.35747 4.42381 4.57809 4.62739 4.68836 4.70217 4.79020 4.82159 4.85480 4.92732 5.05214 5.06259 5.16900 5.23009 5.26834 5.32945 5.46300 5.56316 5.61491 5.83962 5.86739 5.95889 6.26552 6.37880 6.66858 6.81802 6.96025 7.40963 8.90997 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.003778 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.236677 B = 7409.363478 C = 8461.282449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.137 3.863 3 H 0.106 0.894 4 C -0.086 4.086 5 S -0.279 6.279 6 C -0.089 4.089 7 C 0.047 3.953 8 N -0.578 5.578 9 C 0.520 3.480 10 O -0.498 6.498 11 C 0.482 3.518 12 O -0.540 6.540 13 N -0.567 5.567 14 C 0.048 3.952 15 C -0.123 4.123 16 C -0.107 4.107 17 C 0.040 3.960 18 H -0.010 1.010 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.956 3.044 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.120 3.880 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.262 0.738 44 H 0.089 0.911 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 9.876 -14.934 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.033 3.967 3 H 0.124 0.876 4 C -0.235 4.235 5 S -0.051 6.051 6 C -0.238 4.238 7 C -0.076 4.076 8 N -0.310 5.310 9 C 0.304 3.696 10 O -0.377 6.377 11 C 0.266 3.734 12 O -0.421 6.421 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.161 4.161 16 C -0.145 4.145 17 C 0.020 3.980 18 H 0.008 0.992 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.185 4.185 22 N -0.551 5.551 23 Si 0.782 3.218 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.001 4.001 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.175 0.825 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.621 10.334 -15.694 19.350 hybrid contribution 0.059 -1.109 2.065 2.344 sum -4.562 9.225 -13.629 17.078 Atomic orbital electron populations 1.22212 0.90856 1.03649 1.02298 1.21737 0.97052 0.96057 0.81821 0.87578 1.23999 0.92347 1.04926 1.02239 1.86843 1.09659 1.81661 1.26951 1.23840 1.05694 1.00966 0.93291 1.23397 0.77738 1.03417 1.03004 1.48034 1.07609 1.51841 1.23553 1.19967 0.86018 0.78977 0.84664 1.90366 1.17320 1.55507 1.74462 1.20623 0.85442 0.80748 0.86581 1.90284 1.19731 1.60291 1.71799 1.48530 1.13419 1.45825 1.21968 1.23424 0.79949 0.97238 1.06573 1.21875 1.02289 0.95002 0.96930 1.21560 0.96552 0.99924 0.96478 1.18821 0.92746 0.91033 0.95358 0.99172 1.21496 0.95278 1.36339 1.04310 0.92124 1.25819 0.96409 0.95428 1.00845 1.70029 1.02709 1.43297 1.39064 0.85528 0.78281 0.78147 0.79852 1.18802 1.20804 1.20690 1.21892 1.01742 0.95027 0.81488 0.91145 0.92352 0.90369 0.83904 0.89996 0.90943 0.85318 0.83293 0.88644 0.91038 0.82499 0.88373 0.93468 0.92551 0.92944 0.92883 0.89280 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.57 71.98 0.55 -1.80 16 2 C 0.14 2.56 3.32 45.09 0.15 2.71 16 3 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.09 -1.47 5.94 72.06 0.43 -1.04 16 5 S -0.28 -5.84 22.30 -56.49 -1.26 -7.10 16 6 C -0.09 -2.07 6.65 72.07 0.48 -1.59 16 7 C 0.05 1.21 6.03 86.43 0.52 1.73 16 8 N -0.58 -14.65 2.79 -798.35 -2.23 -16.88 16 9 C 0.52 15.85 7.39 87.27 0.64 16.49 16 10 O -0.50 -14.32 8.40 -3.24 -0.03 -14.34 16 11 C 0.48 18.61 7.62 87.27 0.66 19.28 16 12 O -0.54 -23.41 12.50 -3.24 -0.04 -23.45 16 13 N -0.57 -22.77 2.98 -821.32 -2.45 -25.21 16 14 C 0.05 1.56 6.23 86.36 0.54 2.10 16 15 C -0.12 -3.97 6.08 30.67 0.19 -3.78 16 16 C -0.11 -4.23 5.11 30.62 0.16 -4.08 16 17 C 0.04 1.97 2.24 -11.61 -0.03 1.94 16 18 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 19 C -0.54 -28.94 8.56 25.60 0.22 -28.72 16 20 H 0.06 3.19 7.74 -2.92 -0.02 3.16 16 21 C 0.01 0.81 5.30 84.65 0.45 1.26 16 22 N -0.91 -52.91 11.39 21.45 0.24 -52.67 16 23 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.12 5.80 5.37 86.22 0.46 6.27 16 28 H 0.07 1.46 6.60 -2.39 -0.02 1.45 16 29 H 0.06 1.25 6.74 -2.39 -0.02 1.23 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.15 4.95 3.73 -83.88 -0.31 4.64 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.16 4.75 3.80 -81.05 -0.31 4.44 16 39 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.09 5.00 5.13 -2.39 -0.01 4.99 16 45 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -62.23 350.68 2.08 -60.16 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.39 Total: 23.58 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.42 Total: 10.76 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -4.43 Total: -94.76 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.07 Total: -37.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -1.26 Total: -7.10 kcal Total: -62.23 2.08 -60.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118447538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.896 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds