Wall clock time and date at job start Tue Mar 31 2020 14:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00408 * 2 1 4 4 S 1.81398 * 109.47258 * 114.99555 * 3 2 1 5 5 C 1.81395 * 103.00160 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47334 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00197 * 180.02562 * 7 6 5 9 9 O 1.21356 * 119.99888 * 359.97438 * 8 7 6 10 10 C 1.49451 * 120.00460 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99460 * 353.37767 * 10 8 7 12 12 N 1.34768 * 120.00401 * 173.37707 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06201 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.08999 * 109.50224 * 301.34520 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48501 * 109.46889 * 59.99781 * 22 20 18 24 24 H 1.48493 * 109.47092 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46907 * 300.00065 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08940 * 12 10 8 27 27 H 1.08001 * 119.99686 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99873 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00255 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46501 * 355.00257 * 3 2 1 31 31 H 1.08990 * 109.47258 * 234.99969 * 3 2 1 32 32 H 1.09004 * 109.47117 * 60.00271 * 5 4 3 33 33 H 1.08999 * 109.47465 * 300.00374 * 5 4 3 34 34 H 1.09007 * 109.47352 * 60.00093 * 6 5 4 35 35 H 1.09007 * 109.46942 * 300.00236 * 6 5 4 36 36 H 0.97001 * 119.99571 * 359.97438 * 7 6 5 37 37 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 38 38 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 39 39 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 40 40 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 41 41 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 42 42 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 43 43 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 45 45 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 16 2.9918 1.4674 1.5500 5 6 3.8176 3.0718 1.3651 6 6 4.6562 3.3605 2.6118 7 7 5.3228 4.6566 2.4627 8 6 6.1205 5.1210 3.4446 9 8 6.2864 4.4658 4.4525 10 6 6.8010 6.4429 3.2923 11 8 6.7331 7.0424 2.2394 12 7 7.4898 6.9691 4.3242 13 6 7.4566 6.3332 5.6483 14 6 8.8954 6.0829 6.1113 15 6 9.6787 7.3968 6.0645 16 6 9.7172 7.9188 4.6264 17 1 10.1824 7.1735 3.9811 18 6 10.5154 9.1960 4.5761 19 1 10.9528 9.5954 5.4793 20 6 10.6826 9.8578 3.3782 21 7 10.1501 9.3716 2.2784 22 14 11.6656 11.4451 3.3172 23 1 13.0525 11.1866 3.7809 24 1 11.6972 11.9545 1.9227 25 1 11.0289 12.4558 4.1996 26 6 8.2878 8.1899 4.1467 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 -0.0895 31 1 2.7556 1.3250 -0.8417 32 1 3.0685 3.8540 1.2416 33 1 4.4659 3.0480 0.4891 34 1 5.4054 2.5783 2.7350 35 1 4.0083 3.3842 3.4880 36 1 5.1904 5.1801 1.6569 37 1 6.9541 6.9912 6.3572 38 1 6.9208 5.3861 5.5856 39 1 8.8878 5.7000 7.1317 40 1 9.3680 5.3544 5.4524 41 1 10.6962 7.2263 6.4163 42 1 9.1917 8.1322 6.7049 43 1 10.2680 9.8369 1.4355 44 1 7.8530 8.9994 4.7331 45 1 8.3028 8.4692 3.0932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118666214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:50 Heat of formation + Delta-G solvation = -42.188014 kcal Electronic energy + Delta-G solvation = -25004.350526 eV Core-core repulsion = 21342.016254 eV Total energy + Delta-G solvation = -3662.334273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54162 -38.38100 -36.89446 -35.64347 -35.26234 -33.27103 -31.75828 -30.99960 -29.74416 -27.96830 -26.08975 -25.01410 -23.90354 -22.09473 -21.79719 -20.51269 -20.22636 -18.81594 -17.40338 -16.87271 -16.55024 -16.23962 -16.15058 -15.67462 -15.53653 -14.93619 -14.84024 -14.56966 -14.39670 -13.89224 -13.79747 -13.60021 -13.26333 -12.86972 -12.74864 -12.59025 -12.50488 -12.17828 -12.01301 -11.78382 -11.71301 -11.41342 -10.97226 -10.72996 -10.65226 -10.47658 -10.28469 -10.07201 -9.89748 -9.80414 -9.36363 -9.22968 -9.12072 -8.54878 -8.42717 -8.09663 -7.84284 -6.02977 -4.11148 0.80189 1.74844 1.86374 2.24679 2.76758 3.30955 3.36389 3.38166 3.60965 3.96836 4.21274 4.29416 4.40947 4.45183 4.46539 4.69010 4.83935 4.97826 5.06414 5.27550 5.35480 5.38211 5.49176 5.63651 5.69278 5.84811 6.03447 6.04051 6.13010 6.25044 6.39206 6.58558 6.60361 6.74031 6.85843 6.99045 7.02257 7.16352 7.18048 7.57960 7.81753 7.93895 7.95378 8.14266 8.33991 8.54992 8.92688 9.54345 11.02652 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.025502 B = 0.002119 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.701336 B =13210.138899 C =14086.823959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.144 4.144 3 C -0.062 4.062 4 S -0.232 6.232 5 C -0.109 4.109 6 C 0.135 3.865 7 N -0.704 5.704 8 C 0.514 3.486 9 O -0.511 6.511 10 C 0.496 3.504 11 O -0.525 6.525 12 N -0.566 5.566 13 C 0.050 3.950 14 C -0.128 4.128 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.884 5.884 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.108 3.892 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.143 0.857 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.048 0.952 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -15.921 -2.944 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.209 4.209 4 S -0.003 6.003 5 C -0.257 4.257 6 C 0.011 3.989 7 N -0.359 5.359 8 C 0.296 3.704 9 O -0.388 6.388 10 C 0.276 3.724 11 O -0.403 6.403 12 N -0.297 5.297 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.012 4.012 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.168 -16.684 -2.115 24.032 hybrid contribution 0.495 2.036 -1.470 2.560 sum -16.673 -14.648 -3.584 22.481 Atomic orbital electron populations 1.23966 0.95605 1.02472 0.98633 1.22375 0.95754 0.96770 1.01446 1.22506 1.01320 0.99657 0.97454 1.87086 1.60313 1.25822 1.27105 1.23571 1.02142 0.97904 1.02112 1.21010 0.95991 0.85479 0.96443 1.45786 1.47292 1.21124 1.21655 1.20812 0.78995 0.87639 0.82910 1.90321 1.61572 1.59072 1.27807 1.19698 0.81738 0.85618 0.85307 1.90758 1.61019 1.61236 1.27258 1.48447 1.44626 1.27591 1.09073 1.23086 0.99015 1.02019 0.83092 1.21855 0.95584 0.99109 1.00022 1.21664 0.98510 0.94855 1.00053 1.18976 0.91474 0.96710 0.90728 0.95245 1.21065 1.32670 1.07856 0.94185 0.92272 1.25059 0.95557 0.97752 0.95699 1.69857 1.43994 1.39258 0.99006 0.86617 0.80592 0.83549 0.77016 1.20243 1.21261 1.20217 1.22498 0.90876 0.81609 1.06179 0.88225 0.87661 0.86340 0.89524 0.88969 0.89003 0.88909 0.89917 0.89963 0.74988 0.92670 0.84031 0.92230 0.92325 0.93048 0.93243 0.92576 0.93345 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 14.32 29.02 0.42 -0.41 16 2 C -0.14 -0.85 9.52 -36.02 -0.34 -1.19 16 3 C -0.06 -0.38 6.38 36.01 0.23 -0.15 16 4 S -0.23 -1.93 21.72 -107.50 -2.33 -4.27 16 5 C -0.11 -0.83 6.05 37.16 0.22 -0.60 16 6 C 0.14 1.35 5.68 -4.04 -0.02 1.33 16 7 N -0.70 -8.73 5.55 -60.72 -0.34 -9.07 16 8 C 0.51 8.38 7.78 -11.59 -0.09 8.29 16 9 O -0.51 -8.73 13.10 5.49 0.07 -8.66 16 10 C 0.50 9.94 7.74 -11.59 -0.09 9.85 16 11 O -0.53 -11.80 15.95 5.49 0.09 -11.71 16 12 N -0.57 -11.84 2.97 -173.27 -0.51 -12.36 16 13 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 14 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 15 C -0.11 -2.35 5.11 -26.69 -0.14 -2.48 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.52 -14.08 8.57 -34.44 -0.30 -14.38 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.88 -25.43 11.38 55.43 0.63 -24.80 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.11 2.63 5.38 -3.71 -0.02 2.61 16 27 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 28 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 29 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 30 H 0.09 0.47 7.79 -51.92 -0.40 0.06 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.41 4.69 7.96 -40.82 -0.33 4.36 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.14 2.47 3.78 -56.75 -0.21 2.25 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.12 3.43 5.17 -51.93 -0.27 3.16 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -30.83 380.38 -9.38 -40.21 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.08 Total: 5.11 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.61 Total: 3.69 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.22 Total: -46.23 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.33 Total: -4.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.83 -9.38 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118666214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.981 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds