Wall clock time and date at job start Tue Mar 31 2020 15:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 114.00024 * 2 1 4 4 C 1.50702 * 109.47228 * 179.97438 * 3 2 1 5 5 S 1.70448 * 124.59005 * 270.02592 * 4 3 2 6 6 C 1.75502 * 92.44474 * 179.73424 * 5 4 3 7 7 C 1.32771 * 110.57663 * 359.97438 * 6 5 4 8 8 C 1.36002 * 124.59108 * 89.72211 * 4 3 2 9 9 C 1.47197 * 123.46284 * 0.23199 * 8 4 3 10 10 O 1.21634 * 119.99680 * 359.97438 * 9 8 4 11 11 N 1.34769 * 120.00131 * 179.97438 * 9 8 4 12 12 C 1.46502 * 120.00245 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46739 * 35.00128 * 12 11 9 14 14 C 1.52995 * 109.47251 * 275.00524 * 12 11 9 15 15 C 1.53000 * 109.47203 * 155.00137 * 12 11 9 16 16 C 1.53003 * 109.47169 * 295.00150 * 15 12 11 17 17 H 1.09004 * 109.46836 * 55.00089 * 16 15 12 18 18 C 1.53001 * 109.47105 * 174.99827 * 16 15 12 19 19 N 1.46500 * 109.47200 * 295.00086 * 16 15 12 20 20 C 1.36935 * 119.99919 * 154.99776 * 19 16 15 21 21 H 1.08004 * 120.00137 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99950 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00204 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00155 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47055 * 89.99822 * 24 22 20 26 26 H 1.48496 * 109.47119 * 209.99599 * 24 22 20 27 27 H 1.48502 * 109.46860 * 329.99965 * 24 22 20 28 28 H 1.09008 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47031 * 300.00020 * 1 2 3 30 30 H 1.08996 * 109.46772 * 60.00580 * 1 2 3 31 31 H 1.08997 * 109.47041 * 59.99548 * 3 2 1 32 32 H 1.08998 * 109.47094 * 300.00170 * 3 2 1 33 33 H 1.07995 * 124.71504 * 179.97438 * 6 5 4 34 34 H 1.07997 * 123.46000 * 180.02562 * 7 6 5 35 35 H 0.97003 * 120.00422 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47400 * 59.99697 * 14 12 11 37 37 H 1.09001 * 109.47112 * 180.02562 * 14 12 11 38 38 H 1.09005 * 109.47346 * 299.99624 * 14 12 11 39 39 H 1.08991 * 109.47097 * 55.00336 * 15 12 11 40 40 H 1.09004 * 109.46975 * 175.00427 * 15 12 11 41 41 H 1.09001 * 109.46602 * 60.00609 * 18 16 15 42 42 H 1.08997 * 109.47038 * 180.02562 * 18 16 15 43 43 H 1.08994 * 109.47268 * 300.00474 * 18 16 15 44 44 H 0.96999 * 119.99774 * 335.00401 * 19 16 15 45 45 H 0.96998 * 120.00577 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 16 4.4766 1.1097 1.4042 6 6 5.9577 0.9845 0.4711 7 6 5.6926 1.0029 -0.8298 8 6 4.2823 1.1199 -1.1186 9 6 3.7343 1.1614 -2.4842 10 8 2.5341 1.2595 -2.6550 11 7 4.5625 1.0907 -3.5450 12 6 4.0171 1.1315 -4.9041 13 1 3.1516 1.7936 -4.9285 14 6 3.5937 -0.2768 -5.3263 15 6 5.0856 1.6530 -5.8670 16 6 5.4188 3.1056 -5.5209 17 1 5.7091 3.1718 -4.4723 18 6 6.5737 3.5876 -6.4011 19 7 4.2420 3.9459 -5.7558 20 6 4.0957 5.1249 -5.0748 21 1 4.8476 5.4351 -4.3643 22 6 2.9809 5.9214 -5.2978 23 7 2.8399 7.0544 -4.6429 24 14 1.6800 5.3846 -6.5262 25 1 0.6506 4.5694 -5.8326 26 1 1.0407 6.5834 -7.1257 27 1 2.3145 4.5744 -7.5967 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8463 -0.8899 33 1 6.9473 0.9037 0.8959 34 1 6.4534 0.9374 -1.5935 35 1 5.5197 1.0120 -3.4088 36 1 2.8325 -0.6484 -4.6403 37 1 3.1884 -0.2466 -6.3376 38 1 4.4592 -0.9391 -5.3019 39 1 5.9842 1.0428 -5.7776 40 1 4.7106 1.5999 -6.8892 41 1 6.2833 3.5215 -7.4497 42 1 6.8114 4.6223 -6.1542 43 1 7.4492 2.9624 -6.2264 44 1 3.5665 3.6671 -6.3936 45 1 2.0608 7.6109 -4.7984 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134732412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:11 Heat of formation + Delta-G solvation = -40.879779 kcal Electronic energy + Delta-G solvation = -26406.886022 eV Core-core repulsion = 22744.608479 eV Total energy + Delta-G solvation = -3662.277543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.91986 -37.99182 -37.11417 -36.42755 -34.55139 -32.14208 -31.16728 -30.81977 -29.20936 -27.27725 -26.40000 -25.73293 -23.60115 -23.23568 -21.81096 -20.79780 -19.81655 -19.40206 -17.69326 -17.56103 -16.60049 -16.36465 -15.92395 -15.41836 -14.92380 -14.81790 -14.56392 -14.39338 -14.01062 -13.63041 -13.39481 -13.15396 -13.04204 -12.65081 -12.61247 -12.35959 -12.20647 -12.06604 -11.95602 -11.79566 -11.68366 -11.38370 -11.19032 -11.10086 -10.88690 -10.63822 -10.46418 -10.26628 -9.93293 -9.86017 -9.52689 -9.25603 -9.01614 -8.87203 -8.74757 -8.42478 -7.20488 -5.70766 -3.05324 0.71009 1.42357 1.83922 2.00205 3.42165 3.45988 3.48970 3.50797 3.61524 3.94927 4.65102 4.65518 4.88156 4.95979 5.04041 5.21522 5.27338 5.33041 5.34988 5.39224 5.46872 5.57004 5.60342 5.67714 5.71470 5.79723 5.83129 5.87809 5.91647 6.00229 6.03707 6.18209 6.21199 6.29708 6.34818 6.45489 6.57926 6.77965 6.87644 7.00846 7.12101 7.81472 8.04703 8.48018 8.56696 9.26848 9.99824 10.19070 11.47884 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.004221 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.727149 B = 6631.929704 C = 7177.580722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.122 3.878 4 C -0.150 4.150 5 S 0.188 5.812 6 C -0.230 4.230 7 C -0.107 4.107 8 C -0.140 4.140 9 C 0.581 3.419 10 O -0.527 6.527 11 N -0.710 5.710 12 C 0.145 3.855 13 H 0.100 0.900 14 C -0.162 4.162 15 C -0.135 4.135 16 C 0.176 3.824 17 H 0.055 0.945 18 C -0.165 4.165 19 N -0.745 5.745 20 C -0.236 4.236 21 H 0.088 0.912 22 C 0.005 3.995 23 N -0.936 5.936 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.293 1.293 27 H -0.278 1.278 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.394 0.606 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.359 0.641 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -17.379 9.226 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.044 3.956 4 C -0.270 4.270 5 S 0.454 5.546 6 C -0.365 4.365 7 C -0.137 4.137 8 C -0.158 4.158 9 C 0.366 3.634 10 O -0.405 6.405 11 N -0.361 5.361 12 C 0.040 3.960 13 H 0.118 0.882 14 C -0.220 4.220 15 C -0.173 4.173 16 C 0.067 3.933 17 H 0.073 0.927 18 C -0.226 4.226 19 N -0.388 5.388 20 C -0.366 4.366 21 H 0.105 0.895 22 C -0.190 4.190 23 N -0.584 5.584 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.204 1.204 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.187 0.813 34 H 0.167 0.833 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.192 0.808 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.171 -17.240 10.799 20.767 hybrid contribution -0.253 0.027 -2.405 2.419 sum 3.918 -17.213 8.394 19.547 Atomic orbital electron populations 1.22713 0.80721 1.02520 1.00261 1.87871 1.19795 1.26819 1.95540 1.21009 0.85869 0.85947 1.02779 1.24103 1.00012 1.05680 0.97238 1.82932 0.95254 1.69030 1.07352 1.25430 1.02405 1.11381 0.97331 1.21208 0.94506 1.01562 0.96413 1.20298 0.92797 1.08638 0.94079 1.17423 0.86219 0.76207 0.83516 1.90736 1.14718 1.49242 1.85793 1.45779 1.09823 1.74686 1.05766 1.20995 0.98263 0.96519 0.80197 0.88221 1.22194 1.01327 0.96973 1.01516 1.22222 0.98112 0.97812 0.99199 1.20199 0.87816 0.87777 0.97512 0.92723 1.22423 0.98184 1.01490 1.00458 1.42771 1.22552 1.23447 1.50050 1.19006 1.05486 0.94931 1.17179 0.89465 1.24626 0.98118 0.96724 0.99560 1.69697 1.30178 1.13444 1.45049 0.86605 0.82920 0.77553 0.81817 1.20989 1.21918 1.20390 0.89762 0.94311 0.93411 0.92777 0.88063 0.81320 0.83323 0.77156 0.92299 0.91898 0.92931 0.91545 0.90714 0.93654 0.92446 0.94384 0.80780 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -5.80 10.69 -35.23 -0.38 -6.18 16 3 C 0.12 1.85 5.65 36.01 0.20 2.05 16 4 C -0.15 -2.21 5.97 -35.11 -0.21 -2.42 16 5 S 0.19 2.06 22.97 -107.50 -2.47 -0.41 16 6 C -0.23 -2.30 11.12 28.86 0.32 -1.98 16 7 C -0.11 -1.24 9.91 -39.02 -0.39 -1.62 16 8 C -0.14 -2.12 5.98 -104.63 -0.63 -2.74 16 9 C 0.58 10.14 7.76 -12.63 -0.10 10.04 16 10 O -0.53 -11.01 13.72 5.25 0.07 -10.94 16 11 N -0.71 -10.52 4.43 -54.96 -0.24 -10.76 16 12 C 0.14 2.25 2.52 -67.93 -0.17 2.08 16 13 H 0.10 1.99 7.05 -51.93 -0.37 1.62 16 14 C -0.16 -2.14 9.48 37.15 0.35 -1.79 16 15 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 16 C 0.18 3.21 2.84 -67.93 -0.19 3.01 16 17 H 0.05 1.04 7.56 -51.93 -0.39 0.65 16 18 C -0.17 -2.77 9.49 37.16 0.35 -2.42 16 19 N -0.75 -17.34 4.30 -53.42 -0.23 -17.57 16 20 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 21 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.94 -29.90 13.97 55.49 0.78 -29.13 16 24 Si 0.88 22.78 27.74 -169.99 -4.71 18.07 16 25 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 27 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 28 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.81 5.94 -51.93 -0.31 1.50 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.31 7.10 -52.49 -0.37 0.94 16 35 H 0.39 4.65 7.15 -40.82 -0.29 4.36 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 8.37 5.66 -40.82 -0.23 8.14 16 45 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -35.15 383.05 -8.17 -43.32 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.05 Total: 10.90 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 0.29 Total: -3.08 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.30 Total: -17.11 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.07 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.47 Total: -0.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.15 -8.17 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134732412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.438 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds