Wall clock time and date at job start Tue Mar 31 2020 15:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99651 * 2 1 4 4 C 1.50701 * 109.46738 * 179.97438 * 3 2 1 5 5 S 1.70440 * 124.59253 * 270.02142 * 4 3 2 6 6 C 1.75509 * 92.44424 * 179.97438 * 5 4 3 7 7 C 1.32770 * 110.57646 * 0.02562 * 6 5 4 8 8 C 1.36011 * 124.58693 * 89.98437 * 4 3 2 9 9 C 1.47189 * 123.46294 * 0.07174 * 8 4 3 10 10 O 1.21639 * 120.00086 * 359.97438 * 9 8 4 11 11 N 1.34780 * 119.99846 * 179.97438 * 9 8 4 12 12 C 1.46497 * 119.99921 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47116 * 325.00078 * 12 11 9 14 14 C 1.53002 * 109.46939 * 84.99751 * 12 11 9 15 15 C 1.53000 * 109.47040 * 205.00070 * 12 11 9 16 16 C 1.52995 * 109.47065 * 65.00192 * 15 12 11 17 17 H 1.08996 * 109.47497 * 55.00072 * 16 15 12 18 18 C 1.53005 * 109.47091 * 174.99731 * 16 15 12 19 19 N 1.46499 * 109.47129 * 294.99705 * 16 15 12 20 20 C 1.36938 * 120.00270 * 155.00157 * 19 16 15 21 21 H 1.08001 * 119.99728 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00320 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99614 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47195 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46929 * 120.00250 * 24 22 20 27 27 H 1.48498 * 109.47217 * 240.00041 * 24 22 20 28 28 H 1.08995 * 109.47057 * 59.99914 * 1 2 3 29 29 H 1.08998 * 109.46587 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47060 * 299.99745 * 1 2 3 31 31 H 1.09001 * 109.46853 * 60.00159 * 3 2 1 32 32 H 1.09003 * 109.46916 * 300.00132 * 3 2 1 33 33 H 1.08007 * 124.71097 * 179.73588 * 6 5 4 34 34 H 1.08002 * 123.46009 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00279 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.47724 * 299.99998 * 14 12 11 37 37 H 1.08999 * 109.46950 * 60.00225 * 14 12 11 38 38 H 1.09000 * 109.47078 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.46645 * 184.99960 * 15 12 11 40 40 H 1.08997 * 109.46793 * 304.99816 * 15 12 11 41 41 H 1.08995 * 109.47332 * 300.00100 * 18 16 15 42 42 H 1.09008 * 109.46795 * 60.00206 * 18 16 15 43 43 H 1.08999 * 109.47388 * 179.97438 * 18 16 15 44 44 H 0.97004 * 120.00033 * 335.00631 * 19 16 15 45 45 H 0.97000 * 119.99516 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1865 0.0006 5 16 4.4765 1.1099 1.4041 6 6 5.9582 0.9919 0.4708 7 6 5.6933 1.0135 -0.8300 8 6 4.2826 1.1251 -1.1188 9 6 3.7348 1.1694 -2.4842 10 8 2.5343 1.2654 -2.6551 11 7 4.5634 1.1038 -3.5452 12 6 4.0181 1.1474 -4.9042 13 1 3.0577 0.6324 -4.9270 14 6 3.8258 2.6043 -5.3301 15 6 4.9890 0.4588 -5.8656 16 6 5.0852 -1.0275 -5.5155 17 1 4.0875 -1.4664 -5.5170 18 6 5.9573 -1.7400 -6.5513 19 7 5.6832 -1.1785 -4.1867 20 6 5.4234 -2.2980 -3.4422 21 1 4.7780 -3.0698 -3.8348 22 6 5.9896 -2.4409 -2.1828 23 7 6.7758 -1.5000 -1.7042 24 14 5.6346 -3.9677 -1.1670 25 1 4.7280 -4.8670 -1.9251 26 1 6.9070 -4.6771 -0.8784 27 1 4.9872 -3.5733 0.1099 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.9484 0.9172 0.8957 34 1 6.4545 0.9534 -1.5938 35 1 5.5207 1.0269 -3.4090 36 1 3.1342 3.0948 -4.6452 37 1 4.7862 3.1192 -5.3072 38 1 3.4206 2.6367 -6.3414 39 1 4.6271 0.5687 -6.8879 40 1 5.9739 0.9174 -5.7775 41 1 5.5124 -1.6276 -7.5400 42 1 6.9551 -1.3010 -6.5498 43 1 6.0262 -2.7987 -6.3017 44 1 6.2631 -0.4854 -3.8342 45 1 7.1717 -1.6001 -0.8244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134732413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:14 Heat of formation + Delta-G solvation = -34.658258 kcal Electronic energy + Delta-G solvation = -27496.475392 eV Core-core repulsion = 23834.467634 eV Total energy + Delta-G solvation = -3662.007758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.50385 -37.67757 -36.78561 -35.92724 -34.09962 -32.21095 -30.64508 -30.51861 -28.48912 -26.85857 -26.30263 -25.35355 -23.62962 -23.02469 -21.28044 -20.34531 -20.02674 -18.72040 -17.13037 -17.02755 -16.17174 -16.04242 -15.68936 -15.06009 -14.79955 -14.46074 -14.15280 -13.98262 -13.73366 -13.44668 -12.97499 -12.77299 -12.71333 -12.56273 -12.17890 -11.99885 -11.85716 -11.76741 -11.69295 -11.62228 -11.28296 -11.04739 -10.93585 -10.78229 -10.68353 -10.47673 -10.33095 -10.17521 -9.84968 -9.61670 -9.52128 -8.92247 -8.85621 -8.38331 -8.19364 -7.78383 -6.85888 -5.75307 -2.97933 1.29484 2.08610 2.49237 2.83029 3.48349 3.55705 3.58142 3.92004 4.07957 4.41924 4.66234 5.12495 5.20601 5.31110 5.43879 5.49102 5.52961 5.57391 5.62524 5.65074 5.71938 5.84613 5.88164 5.92585 5.97805 6.03923 6.05911 6.16619 6.20573 6.27416 6.38433 6.43250 6.57653 6.62330 6.64245 6.84271 6.89284 7.01809 7.08794 7.25644 7.46766 7.77829 8.28941 8.45302 8.99877 9.57664 10.09404 10.45446 11.47427 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.006522 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.194827 B = 4291.950493 C = 5531.952775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.131 3.869 4 C -0.166 4.166 5 S 0.139 5.861 6 C -0.234 4.234 7 C -0.045 4.045 8 C -0.125 4.125 9 C 0.592 3.408 10 O -0.559 6.559 11 N -0.690 5.690 12 C 0.151 3.849 13 H 0.083 0.917 14 C -0.161 4.161 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.047 0.953 18 C -0.163 4.163 19 N -0.714 5.714 20 C -0.227 4.227 21 H 0.065 0.935 22 C -0.003 4.003 23 N -0.925 5.925 24 Si 0.896 3.104 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.291 1.291 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.404 0.596 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 9.936 -0.145 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.293 6.293 3 C 0.053 3.947 4 C -0.286 4.286 5 S 0.404 5.596 6 C -0.368 4.368 7 C -0.074 4.074 8 C -0.144 4.144 9 C 0.378 3.622 10 O -0.440 6.440 11 N -0.342 5.342 12 C 0.045 3.955 13 H 0.101 0.899 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.059 3.941 17 H 0.065 0.935 18 C -0.223 4.223 19 N -0.358 5.358 20 C -0.358 4.358 21 H 0.083 0.917 22 C -0.199 4.199 23 N -0.574 5.574 24 Si 0.729 3.271 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.218 1.218 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.242 0.758 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.211 0.789 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.417 9.683 1.333 11.175 hybrid contribution 0.752 -0.945 -0.699 1.396 sum -4.665 8.738 0.634 9.926 Atomic orbital electron populations 1.22663 0.81510 1.02414 0.99499 1.88019 1.19068 1.26887 1.95310 1.20888 0.86654 0.85821 1.01325 1.23875 0.99130 1.08257 0.97331 1.82569 0.97083 1.71343 1.08570 1.25140 1.00769 1.13756 0.97175 1.21258 0.94188 0.95410 0.96501 1.20247 0.93387 1.07307 0.93415 1.17403 0.85677 0.75200 0.83881 1.90628 1.14973 1.52061 1.86325 1.45819 1.10708 1.73007 1.04684 1.20791 0.98208 0.94846 0.81609 0.89922 1.22205 1.01601 0.97148 1.01039 1.22206 0.99131 0.97524 0.98329 1.20273 0.95724 0.91441 0.86631 0.93498 1.22420 1.00292 1.01709 0.97877 1.42408 1.56988 1.22780 1.13575 1.19170 1.23136 0.96691 0.96823 0.91698 1.24457 1.00217 0.97958 0.97258 1.69503 1.36222 1.33196 1.18487 0.86267 0.77001 0.83083 0.80792 1.21015 1.22324 1.21808 0.93874 0.89931 0.94768 0.93723 0.88964 0.82166 0.82181 0.75831 0.92438 0.92854 0.92215 0.90884 0.91810 0.94671 0.93663 0.92913 0.78919 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.01 101.05 1.11 1.64 16 2 O -0.37 -7.32 10.69 -35.23 -0.38 -7.70 16 3 C 0.13 2.33 5.65 36.01 0.20 2.54 16 4 C -0.17 -3.17 5.97 -35.11 -0.21 -3.38 16 5 S 0.14 2.29 22.97 -107.50 -2.47 -0.18 16 6 C -0.23 -4.06 11.12 28.86 0.32 -3.74 16 7 C -0.05 -0.86 8.31 -39.02 -0.32 -1.19 16 8 C -0.12 -2.52 5.98 -104.63 -0.63 -3.15 16 9 C 0.59 12.27 7.76 -12.62 -0.10 12.17 16 10 O -0.56 -12.42 13.72 5.24 0.07 -12.35 16 11 N -0.69 -12.65 3.78 -54.95 -0.21 -12.86 16 12 C 0.15 2.44 2.57 -67.93 -0.17 2.27 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 14 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 15 C -0.13 -2.00 4.43 -26.73 -0.12 -2.11 16 16 C 0.17 3.15 2.89 -67.93 -0.20 2.96 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 19 N -0.71 -15.98 3.84 -53.43 -0.21 -16.18 16 20 C -0.23 -5.96 9.93 -15.06 -0.15 -6.11 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -23.95 10.70 55.49 0.59 -23.36 16 24 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 25 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.71 5.94 -51.93 -0.31 1.41 16 33 H 0.16 2.45 8.06 -52.48 -0.42 2.02 16 34 H 0.16 3.13 6.42 -52.49 -0.34 2.79 16 35 H 0.40 7.40 5.05 -40.82 -0.21 7.20 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.38 8.49 5.70 -40.82 -0.23 8.25 16 45 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -29.59 377.34 -8.52 -38.11 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.94 Total: 13.73 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 0.35 Total: -2.55 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.18 Total: -52.40 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.30 Total: -20.05 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.47 Total: -0.18 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.59 -8.52 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134732413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.454 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds