Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42907 * 113.99651 * 2 1 4 4 C 1.50701 * 109.46738 * 179.97438 * 3 2 1 5 5 S 1.70440 * 124.59253 * 270.02142 * 4 3 2 6 6 C 1.75509 * 92.44424 * 179.97438 * 5 4 3 7 7 C 1.32770 * 110.57646 * 0.02562 * 6 5 4 8 8 C 1.36011 * 124.58693 * 89.98437 * 4 3 2 9 9 C 1.47189 * 123.46294 * 0.07174 * 8 4 3 10 10 O 1.21639 * 120.00086 * 359.97438 * 9 8 4 11 11 N 1.34780 * 119.99846 * 179.97438 * 9 8 4 12 12 C 1.46497 * 119.99921 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47116 * 325.00078 * 12 11 9 14 14 C 1.53002 * 109.46939 * 84.99751 * 12 11 9 15 15 C 1.53000 * 109.47040 * 205.00070 * 12 11 9 16 16 C 1.52995 * 109.47065 * 65.00192 * 15 12 11 17 17 H 1.08996 * 109.47497 * 55.00072 * 16 15 12 18 18 C 1.53005 * 109.47091 * 174.99731 * 16 15 12 19 19 N 1.46499 * 109.47129 * 294.99705 * 16 15 12 20 20 C 1.36938 * 120.00270 * 155.00157 * 19 16 15 21 21 H 1.08001 * 119.99728 * 0.02562 * 20 19 16 22 22 C 1.38814 * 120.00320 * 180.02562 * 20 19 16 23 23 N 1.31622 * 119.99614 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47195 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46929 * 120.00250 * 24 22 20 27 27 H 1.48498 * 109.47217 * 240.00041 * 24 22 20 28 28 H 1.08995 * 109.47057 * 59.99914 * 1 2 3 29 29 H 1.08998 * 109.46587 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47060 * 299.99745 * 1 2 3 31 31 H 1.09001 * 109.46853 * 60.00159 * 3 2 1 32 32 H 1.09003 * 109.46916 * 300.00132 * 3 2 1 33 33 H 1.08007 * 124.71097 * 179.73588 * 6 5 4 34 34 H 1.08002 * 123.46009 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00279 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.47724 * 299.99998 * 14 12 11 37 37 H 1.08999 * 109.46950 * 60.00225 * 14 12 11 38 38 H 1.09000 * 109.47078 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.46645 * 184.99960 * 15 12 11 40 40 H 1.08997 * 109.46793 * 304.99816 * 15 12 11 41 41 H 1.08995 * 109.47332 * 300.00100 * 18 16 15 42 42 H 1.09008 * 109.46795 * 60.00206 * 18 16 15 43 43 H 1.08999 * 109.47388 * 179.97438 * 18 16 15 44 44 H 0.97004 * 120.00033 * 335.00631 * 19 16 15 45 45 H 0.97000 * 119.99516 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1865 0.0006 5 16 4.4765 1.1099 1.4041 6 6 5.9582 0.9919 0.4708 7 6 5.6933 1.0135 -0.8300 8 6 4.2826 1.1251 -1.1188 9 6 3.7348 1.1694 -2.4842 10 8 2.5343 1.2654 -2.6551 11 7 4.5634 1.1038 -3.5452 12 6 4.0181 1.1474 -4.9042 13 1 3.0577 0.6324 -4.9270 14 6 3.8258 2.6043 -5.3301 15 6 4.9890 0.4588 -5.8656 16 6 5.0852 -1.0275 -5.5155 17 1 4.0875 -1.4664 -5.5170 18 6 5.9573 -1.7400 -6.5513 19 7 5.6832 -1.1785 -4.1867 20 6 5.4234 -2.2980 -3.4422 21 1 4.7780 -3.0698 -3.8348 22 6 5.9896 -2.4409 -2.1828 23 7 6.7758 -1.5000 -1.7042 24 14 5.6346 -3.9677 -1.1670 25 1 4.7280 -4.8670 -1.9251 26 1 6.9070 -4.6771 -0.8784 27 1 4.9872 -3.5733 0.1099 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.9484 0.9172 0.8957 34 1 6.4545 0.9534 -1.5938 35 1 5.5207 1.0269 -3.4090 36 1 3.1342 3.0948 -4.6452 37 1 4.7862 3.1192 -5.3072 38 1 3.4206 2.6367 -6.3414 39 1 4.6271 0.5687 -6.8879 40 1 5.9739 0.9174 -5.7775 41 1 5.5124 -1.6276 -7.5400 42 1 6.9551 -1.3010 -6.5498 43 1 6.0262 -2.7987 -6.3017 44 1 6.2631 -0.4854 -3.8342 45 1 7.1717 -1.6001 -0.8244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134732413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = -52.357398 kcal Electronic energy + Delta-G solvation = -27497.242885 eV Core-core repulsion = 23834.467634 eV Total energy + Delta-G solvation = -3662.775250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98735 -39.05952 -38.24311 -37.42016 -35.71458 -33.96929 -32.09462 -31.94010 -30.18300 -28.14946 -27.56681 -26.67346 -25.52027 -24.44473 -22.70881 -21.73004 -21.54558 -20.20000 -19.04317 -18.43784 -17.54773 -17.40951 -17.15132 -16.58743 -16.36377 -15.95443 -15.67987 -15.47047 -15.39242 -15.04103 -14.39999 -14.22234 -14.18033 -13.85409 -13.59119 -13.47434 -13.28596 -13.15919 -13.06084 -12.88242 -12.78156 -12.62184 -12.57630 -12.31221 -12.24978 -12.10924 -11.88687 -11.69112 -11.54756 -11.38034 -10.92671 -10.82717 -10.33717 -9.87188 -9.62556 -9.16162 -8.70409 -7.78865 -4.97620 -0.15128 0.71652 1.09321 1.35607 1.42664 1.49659 1.50601 2.45733 2.63245 2.66599 3.08985 3.55908 3.82164 3.85134 4.01634 4.04365 4.13595 4.20925 4.39187 4.44340 4.46772 4.55301 4.59607 4.63690 4.72545 4.76704 4.78919 4.85934 4.89490 4.94731 5.08184 5.13655 5.16999 5.23375 5.39277 5.41175 5.45145 5.56706 5.64743 5.67989 5.84657 6.19651 6.44992 6.79136 7.47634 7.54479 8.23635 8.52306 9.41498 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.006522 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.194827 B = 4291.950493 C = 5531.952775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.412 6.412 3 C 0.133 3.867 4 C -0.190 4.190 5 S 0.198 5.802 6 C -0.238 4.238 7 C -0.058 4.058 8 C -0.153 4.153 9 C 0.581 3.419 10 O -0.585 6.585 11 N -0.684 5.684 12 C 0.146 3.854 13 H 0.054 0.946 14 C -0.150 4.150 15 C -0.119 4.119 16 C 0.162 3.838 17 H 0.024 0.976 18 C -0.152 4.152 19 N -0.716 5.716 20 C -0.232 4.232 21 H 0.047 0.953 22 C -0.036 4.036 23 N -0.920 5.920 24 Si 0.929 3.071 25 H -0.290 1.290 26 H -0.294 1.294 27 H -0.306 1.306 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.403 0.597 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.375 0.625 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 11.020 -0.468 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.332 6.332 3 C 0.055 3.945 4 C -0.310 4.310 5 S 0.464 5.536 6 C -0.372 4.372 7 C -0.086 4.086 8 C -0.172 4.172 9 C 0.368 3.632 10 O -0.468 6.468 11 N -0.335 5.335 12 C 0.042 3.958 13 H 0.072 0.928 14 C -0.208 4.208 15 C -0.157 4.157 16 C 0.053 3.947 17 H 0.042 0.958 18 C -0.212 4.212 19 N -0.359 5.359 20 C -0.364 4.364 21 H 0.065 0.935 22 C -0.232 4.232 23 N -0.569 5.569 24 Si 0.763 3.237 25 H -0.216 1.216 26 H -0.221 1.221 27 H -0.234 1.234 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.199 0.801 34 H 0.169 0.831 35 H 0.241 0.759 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.210 0.790 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.987 10.775 0.972 11.913 hybrid contribution 0.561 -1.300 -0.582 1.531 sum -4.427 9.476 0.390 10.466 Atomic orbital electron populations 1.22872 0.79301 1.03505 1.00857 1.87947 1.21688 1.28000 1.95581 1.20908 0.86054 0.85429 1.02082 1.24318 1.00328 1.07944 0.98448 1.82260 0.95300 1.69624 1.06385 1.25506 1.02416 1.12292 0.97026 1.21143 0.93559 0.96846 0.97064 1.20411 0.94173 1.08994 0.93610 1.17683 0.85631 0.75175 0.84758 1.90598 1.15895 1.53559 1.86795 1.45871 1.10419 1.72023 1.05199 1.20946 0.97129 0.96758 0.80986 0.92816 1.22093 1.02173 0.94639 1.01909 1.22122 0.99659 0.94303 0.99638 1.20473 0.94511 0.94269 0.85425 0.95813 1.22261 1.00370 0.99715 0.98864 1.42407 1.57125 1.21596 1.14786 1.19158 1.22495 0.97442 0.97305 0.93532 1.24786 1.01196 0.99199 0.97978 1.69551 1.36170 1.32990 1.18181 0.85758 0.76526 0.82085 0.79372 1.21564 1.22117 1.23402 0.94033 0.89061 0.91807 0.90650 0.90424 0.80065 0.83086 0.75862 0.94236 0.91292 0.89561 0.87343 0.90413 0.91361 0.93181 0.95430 0.79013 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.41 -16.16 10.69 -148.98 -1.59 -17.75 16 3 C 0.13 4.71 5.65 71.24 0.40 5.12 16 4 C -0.19 -7.24 5.97 25.17 0.15 -7.09 16 5 S 0.20 6.24 22.97 -56.49 -1.30 4.95 16 6 C -0.24 -8.00 11.12 66.64 0.74 -7.25 16 7 C -0.06 -2.21 8.31 22.67 0.19 -2.03 16 8 C -0.15 -6.26 5.98 -19.87 -0.12 -6.38 16 9 C 0.58 24.70 7.76 86.59 0.67 25.37 16 10 O -0.58 -26.97 13.72 -4.16 -0.06 -27.03 16 11 N -0.68 -25.30 3.78 -446.02 -1.69 -26.98 16 12 C 0.15 4.64 2.57 44.99 0.12 4.76 16 13 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 14 C -0.15 -3.75 9.48 71.98 0.68 -3.07 16 15 C -0.12 -3.29 4.43 30.59 0.14 -3.15 16 16 C 0.16 5.91 2.89 44.99 0.13 6.04 16 17 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 18 C -0.15 -4.96 9.49 71.98 0.68 -4.27 16 19 N -0.72 -32.09 3.84 -322.94 -1.24 -33.34 16 20 C -0.23 -12.33 9.93 84.03 0.83 -11.49 16 21 H 0.05 2.61 7.83 -2.91 -0.02 2.59 16 22 C -0.04 -1.95 5.50 84.86 0.47 -1.48 16 23 N -0.92 -47.54 10.70 21.65 0.23 -47.31 16 24 Si 0.93 46.87 29.55 68.60 2.03 48.90 16 25 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 26 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 27 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.96 5.94 -2.39 -0.01 2.94 16 33 H 0.18 5.19 8.06 -2.91 -0.02 5.17 16 34 H 0.15 5.95 6.42 -2.91 -0.02 5.93 16 35 H 0.40 14.85 5.05 -92.71 -0.47 14.38 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.38 16.87 5.70 -92.71 -0.53 16.34 16 45 H 0.25 12.85 8.31 -92.71 -0.77 12.08 16 Total: -1.00 -65.15 377.34 2.72 -62.43 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.00 Total: 38.95 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.33 Total: -2.82 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.70 Total: -107.62 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.65 Total: -44.77 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.30 Total: 4.95 kcal Total: -65.15 2.72 -62.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134732413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.071 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds