Wall clock time and date at job start Tue Mar 31 2020 15:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00260 * 2 1 4 4 C 1.50702 * 109.47467 * 179.97438 * 3 2 1 5 5 S 1.70439 * 124.59462 * 269.96214 * 4 3 2 6 6 C 1.75506 * 92.44869 * 180.02562 * 5 4 3 7 7 C 1.32775 * 110.57258 * 359.73729 * 6 5 4 8 8 C 1.36008 * 124.58756 * 90.00181 * 4 3 2 9 9 C 1.47195 * 123.46283 * 359.94293 * 8 4 3 10 10 O 1.21638 * 119.99829 * 0.02562 * 9 8 4 11 11 N 1.34779 * 119.99758 * 179.97438 * 9 8 4 12 12 C 1.46496 * 119.99550 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47509 * 324.99724 * 12 11 9 14 14 C 1.52999 * 109.47410 * 85.00095 * 12 11 9 15 15 C 1.52998 * 109.47164 * 205.00192 * 12 11 9 16 16 C 1.52998 * 109.47384 * 64.99625 * 15 12 11 17 17 H 1.09003 * 109.47082 * 305.00221 * 16 15 12 18 18 C 1.52995 * 109.47443 * 185.00170 * 16 15 12 19 19 N 1.46498 * 109.47009 * 65.00045 * 16 15 12 20 20 C 1.36935 * 120.00239 * 204.99963 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46853 * 299.99471 * 1 2 3 30 30 H 1.08996 * 109.47571 * 59.99595 * 1 2 3 31 31 H 1.08999 * 109.47181 * 60.00191 * 3 2 1 32 32 H 1.08998 * 109.47756 * 300.00557 * 3 2 1 33 33 H 1.07994 * 124.71613 * 179.97438 * 6 5 4 34 34 H 1.08002 * 123.46394 * 180.25004 * 7 6 5 35 35 H 0.96994 * 120.00258 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.47346 * 179.97438 * 14 12 11 37 37 H 1.09003 * 109.47191 * 299.99550 * 14 12 11 38 38 H 1.08996 * 109.47126 * 60.00048 * 14 12 11 39 39 H 1.08997 * 109.46877 * 305.00014 * 15 12 11 40 40 H 1.08999 * 109.47306 * 185.00166 * 15 12 11 41 41 H 1.08996 * 109.47329 * 300.00343 * 18 16 15 42 42 H 1.09003 * 109.46933 * 60.00266 * 18 16 15 43 43 H 1.09004 * 109.47411 * 179.97438 * 18 16 15 44 44 H 0.97004 * 119.99747 * 25.00702 * 19 16 15 45 45 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 16 4.4767 1.1112 1.4041 6 6 5.9585 0.9938 0.4709 7 6 5.6930 1.0083 -0.8300 8 6 4.2827 1.1253 -1.1187 9 6 3.7346 1.1673 -2.4842 10 8 2.5340 1.2617 -2.6550 11 7 4.5633 1.1021 -3.5452 12 6 4.0179 1.1445 -4.9042 13 1 3.0580 0.6284 -4.9268 14 6 3.8239 2.6010 -5.3307 15 6 4.9894 0.4567 -5.8653 16 6 5.0875 -1.0293 -5.5147 17 1 5.3639 -1.1377 -4.4659 18 6 6.1506 -1.6917 -6.3933 19 7 3.7919 -1.6725 -5.7471 20 6 3.4601 -2.8111 -5.0627 21 1 4.1533 -3.2349 -4.3511 22 6 2.2327 -3.4208 -5.2833 23 7 1.3856 -2.9013 -6.1465 24 14 1.7797 -4.9737 -4.3491 25 1 2.2224 -6.1625 -5.1210 26 1 2.4488 -4.9668 -3.0235 27 1 0.3077 -5.0262 -4.1603 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 6.9483 0.9165 0.8957 34 1 6.4537 0.9429 -1.5938 35 1 5.5207 1.0272 -3.4090 36 1 3.4185 2.6325 -6.3421 37 1 3.1316 3.0910 -4.6461 38 1 4.7837 3.1171 -5.3082 39 1 5.9738 0.9164 -5.7775 40 1 4.6274 0.5657 -6.8877 41 1 5.8743 -1.5833 -7.4420 42 1 7.1146 -1.2132 -6.2202 43 1 6.2208 -2.7503 -6.1431 44 1 3.1692 -1.2917 -6.3860 45 1 1.6206 -2.0947 -6.6314 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134732414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:18 Heat of formation + Delta-G solvation = -43.282697 kcal Electronic energy + Delta-G solvation = -26542.000198 eV Core-core repulsion = 22879.618456 eV Total energy + Delta-G solvation = -3662.381742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90821 -37.92352 -37.04951 -36.41266 -34.57247 -32.29404 -31.15690 -30.72369 -28.25648 -27.21638 -26.36196 -25.66471 -23.59884 -23.30456 -21.83279 -20.81355 -19.82825 -19.39301 -17.66671 -17.29650 -16.61224 -16.32258 -15.83631 -15.34754 -14.92667 -14.82731 -14.48124 -14.31292 -14.04930 -13.51468 -13.44727 -13.19328 -13.08740 -12.95950 -12.62668 -12.17639 -12.12059 -12.03205 -11.76586 -11.66307 -11.65219 -11.25337 -11.12880 -10.96782 -10.67494 -10.43218 -10.39330 -10.05011 -9.91031 -9.78861 -9.21172 -9.05841 -9.02665 -8.80538 -8.73466 -8.44336 -6.91108 -5.97476 -2.96300 0.68116 1.40316 1.80890 1.98072 3.50525 3.58782 3.61701 3.65503 3.78509 4.05639 4.63812 4.77661 4.86695 4.96500 5.07547 5.22051 5.35629 5.38525 5.41959 5.44719 5.57529 5.64092 5.69480 5.71981 5.83116 5.85979 5.89149 5.91052 5.94935 5.99041 6.09251 6.15889 6.25195 6.32631 6.41126 6.51065 6.66678 6.81565 6.91863 7.04912 7.25162 7.83042 7.92755 8.57977 8.88137 9.35020 10.21120 10.35485 11.51176 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004861 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.012000 B = 5758.563400 C = 7077.820498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.375 6.375 3 C 0.124 3.876 4 C -0.152 4.152 5 S 0.187 5.813 6 C -0.231 4.231 7 C -0.108 4.108 8 C -0.141 4.141 9 C 0.579 3.421 10 O -0.525 6.525 11 N -0.709 5.709 12 C 0.146 3.854 13 H 0.102 0.898 14 C -0.160 4.160 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.047 0.953 18 C -0.164 4.164 19 N -0.731 5.731 20 C -0.322 4.322 21 H 0.061 0.939 22 C -0.044 4.044 23 N -0.945 5.945 24 Si 1.078 2.922 25 H -0.297 1.297 26 H -0.295 1.295 27 H -0.288 1.288 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.393 0.607 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.365 0.635 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.193 13.564 12.799 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.294 6.294 3 C 0.046 3.954 4 C -0.272 4.272 5 S 0.454 5.546 6 C -0.366 4.366 7 C -0.137 4.137 8 C -0.158 4.158 9 C 0.364 3.636 10 O -0.403 6.403 11 N -0.360 5.360 12 C 0.041 3.959 13 H 0.120 0.880 14 C -0.219 4.219 15 C -0.171 4.171 16 C 0.067 3.933 17 H 0.065 0.935 18 C -0.225 4.225 19 N -0.374 5.374 20 C -0.453 4.453 21 H 0.079 0.921 22 C -0.241 4.241 23 N -0.591 5.591 24 Si 0.909 3.091 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.214 1.214 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.198 0.802 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.084 12.231 14.613 20.331 hybrid contribution 1.850 1.229 -1.940 2.949 sum 8.934 13.461 12.674 20.534 Atomic orbital electron populations 1.22730 0.80518 1.03089 0.99765 1.87963 1.19943 1.26057 1.95394 1.20948 0.85842 0.86604 1.02038 1.24143 1.00123 1.05708 0.97201 1.82917 0.95172 1.69182 1.07355 1.25431 1.02396 1.11453 0.97315 1.21217 0.94565 1.01531 0.96414 1.20327 0.92780 1.08570 0.94153 1.17437 0.86199 0.76451 0.83497 1.90747 1.14491 1.49278 1.85763 1.45792 1.09681 1.74638 1.05888 1.20999 0.99681 0.95183 0.79987 0.87954 1.22184 1.01313 0.96788 1.01582 1.22189 0.98385 0.97282 0.99226 1.20154 0.87299 0.88952 0.96917 0.93494 1.22441 0.97919 1.01470 1.00636 1.42390 1.14844 1.30172 1.49946 1.19972 1.02766 1.02863 1.19710 0.92137 1.25630 0.92835 1.04560 1.01084 1.70841 1.37100 1.23044 1.28119 0.83264 0.76018 0.74942 0.74846 1.22537 1.22221 1.21445 0.89350 0.94590 0.93417 0.93122 0.88580 0.81330 0.83371 0.77317 0.91800 0.92474 0.93079 0.91948 0.90766 0.93689 0.94649 0.92854 0.80158 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -6.60 10.69 -35.23 -0.38 -6.97 16 3 C 0.12 1.88 5.65 36.01 0.20 2.08 16 4 C -0.15 -2.23 5.97 -35.11 -0.21 -2.44 16 5 S 0.19 2.04 22.97 -107.50 -2.47 -0.43 16 6 C -0.23 -2.30 11.12 28.86 0.32 -1.98 16 7 C -0.11 -1.25 9.91 -39.02 -0.39 -1.64 16 8 C -0.14 -2.14 5.98 -104.62 -0.63 -2.77 16 9 C 0.58 10.37 7.76 -12.62 -0.10 10.27 16 10 O -0.53 -11.27 13.72 5.24 0.07 -11.19 16 11 N -0.71 -11.00 4.43 -54.95 -0.24 -11.24 16 12 C 0.15 2.41 2.52 -67.93 -0.17 2.24 16 13 H 0.10 2.22 7.05 -51.93 -0.37 1.86 16 14 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 15 C -0.13 -2.05 4.29 -26.73 -0.11 -2.17 16 16 C 0.18 3.46 2.84 -67.93 -0.19 3.27 16 17 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 18 C -0.16 -2.96 9.49 37.16 0.35 -2.61 16 19 N -0.73 -18.34 4.49 -53.43 -0.24 -18.58 16 20 C -0.32 -9.31 9.93 -15.06 -0.15 -9.46 16 21 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 22 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 23 N -0.95 -30.17 13.70 55.49 0.76 -29.41 16 24 Si 1.08 27.56 29.92 -169.99 -5.09 22.48 16 25 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.61 5.94 -51.93 -0.31 1.30 16 33 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.15 1.35 7.10 -52.49 -0.37 0.98 16 35 H 0.39 4.92 7.15 -40.82 -0.29 4.62 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.37 9.54 6.63 -40.82 -0.27 9.27 16 45 H 0.25 7.97 6.77 -40.82 -0.28 7.70 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -36.00 384.46 -8.47 -44.47 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.98 Total: 11.96 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.30 Total: -6.86 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.28 Total: -59.23 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.30 Total: -18.17 kcal Atomic # 14 Polarization: 27.56 SS G_CDS: -5.09 Total: 22.48 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.47 Total: -0.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.00 -8.47 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134732414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.184 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds