Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46502 * 109.47140 * 180.02562 * 3 2 1 5 5 S 1.65600 * 119.99910 * 165.00217 * 4 3 2 6 6 O 1.42099 * 106.40302 * 311.45387 * 5 4 3 7 7 O 1.42108 * 106.40004 * 178.54037 * 5 4 3 8 8 C 1.76195 * 107.22277 * 64.99718 * 5 4 3 9 9 C 1.38292 * 119.92318 * 89.99587 * 8 5 4 10 10 C 1.38103 * 120.06781 * 179.97438 * 9 8 5 11 11 C 1.38907 * 119.93251 * 359.97438 * 10 9 8 12 12 N 1.39668 * 120.07688 * 179.97438 * 11 10 9 13 13 C 1.46506 * 120.00181 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47454 * 60.00119 * 20 18 16 22 22 H 1.48496 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46926 * 299.99910 * 20 18 16 24 24 C 1.38907 * 119.84667 * 0.25939 * 11 10 9 25 25 C 1.38108 * 119.92754 * 359.48722 * 24 11 10 26 26 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46734 * 299.99719 * 1 2 3 28 28 H 1.08992 * 109.47320 * 59.99936 * 1 2 3 29 29 H 1.08998 * 109.46734 * 240.00281 * 2 1 3 30 30 H 1.08995 * 109.47532 * 119.99578 * 2 1 3 31 31 H 1.09003 * 109.47306 * 60.00088 * 3 2 1 32 32 H 1.09005 * 109.47401 * 300.00200 * 3 2 1 33 33 H 0.96998 * 119.99662 * 344.99637 * 4 3 2 34 34 H 1.07994 * 119.96192 * 359.96035 * 9 8 5 35 35 H 1.08003 * 120.03201 * 179.97438 * 10 9 8 36 36 H 0.97001 * 120.00568 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.47060 * 300.00571 * 13 12 11 38 38 H 1.09004 * 109.47073 * 60.00060 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 40 40 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 41 41 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 42 42 H 1.09004 * 109.47298 * 59.99717 * 15 14 13 43 43 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 44 44 H 1.08004 * 120.03686 * 179.72396 * 24 11 10 45 45 H 1.07998 * 119.96672 * 180.25929 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 16 4.3328 2.8280 -0.3719 6 8 3.7513 3.3353 -1.5651 7 8 5.7137 2.5145 -0.2526 8 6 3.9781 4.0024 0.8928 9 6 4.7801 4.0686 2.0174 10 6 4.5052 4.9884 3.0102 11 6 3.4220 5.8479 2.8781 12 7 3.1408 6.7789 3.8806 13 6 1.9976 7.6842 3.7398 14 6 1.9146 8.5954 4.9660 15 6 0.7203 9.5404 4.8193 16 6 0.6382 10.4375 6.0274 17 1 1.3653 10.3433 6.8204 18 6 -0.3647 11.3792 6.1199 19 7 -1.2498 11.4942 5.1540 20 14 -0.4661 12.4917 7.6170 21 1 0.7834 13.2862 7.7290 22 1 -1.6253 13.4088 7.4746 23 1 -0.6375 11.6639 8.8380 24 6 2.6155 5.7754 1.7494 25 6 2.8991 4.8568 0.7578 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9901 0.6312 0.2165 34 1 5.6222 3.4003 2.1194 35 1 5.1317 5.0393 3.8884 36 1 3.7024 6.8261 4.6701 37 1 2.1236 8.2920 2.8437 38 1 1.0803 7.1011 3.6572 39 1 1.7887 7.9878 5.8622 40 1 2.8318 9.1784 5.0482 41 1 0.8458 10.1480 3.9230 42 1 -0.1968 8.9570 4.7373 43 1 -1.9556 12.1565 5.2192 44 1 1.7699 6.4391 1.6456 45 1 2.2750 4.8027 -0.1219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -76.965909 kcal Electronic energy + Delta-G solvation = -24503.876208 eV Core-core repulsion = 20840.033852 eV Total energy + Delta-G solvation = -3663.842355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.56822 -37.37602 -36.65434 -36.30910 -35.92248 -33.75667 -32.48212 -31.82237 -31.07987 -29.25402 -26.46186 -26.01392 -23.76949 -22.89912 -22.14539 -21.67338 -20.45428 -19.60128 -18.16799 -17.55347 -16.95976 -16.68459 -16.45247 -15.76471 -15.56988 -15.03723 -14.94526 -14.63794 -14.51937 -13.90155 -13.59850 -13.46923 -13.39136 -13.31432 -13.06077 -12.96133 -12.40031 -12.19565 -12.12510 -12.10329 -11.89171 -11.88703 -11.41418 -11.32601 -11.24966 -11.01006 -10.94567 -10.78716 -10.67004 -10.43732 -9.88616 -9.79633 -9.58982 -9.25163 -9.13905 -8.46124 -7.71867 -6.11033 -4.14436 0.33874 1.01505 1.31031 2.88601 3.26077 3.31130 3.32140 3.38017 3.49639 3.75036 4.23254 4.36865 4.46310 4.59311 4.68830 4.78025 4.81219 5.08727 5.19583 5.20359 5.25030 5.27358 5.33042 5.39239 5.53433 5.56729 5.59798 5.62225 5.73276 5.81433 5.90115 5.91311 5.96906 6.10562 6.16625 6.41108 6.44356 6.66408 6.70681 6.83011 7.20878 7.50623 7.61529 7.62227 7.86522 8.27688 8.91564 9.50350 11.00189 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.002036 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.162212 B =13750.572584 C =14580.240040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.114 3.886 4 N -1.122 6.122 5 S 2.701 3.299 6 O -0.965 6.965 7 O -0.969 6.969 8 C -0.745 4.745 9 C 0.027 3.973 10 C -0.223 4.223 11 C 0.275 3.725 12 N -0.729 5.729 13 C 0.113 3.887 14 C -0.121 4.121 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.219 4.219 25 C 0.026 3.974 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.133 0.867 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -23.280 -9.404 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C -0.012 4.012 4 N -0.881 5.881 5 S 2.794 3.206 6 O -0.955 6.955 7 O -0.959 6.959 8 C -0.837 4.837 9 C 0.007 3.993 10 C -0.247 4.247 11 C 0.165 3.835 12 N -0.351 5.351 13 C -0.010 4.010 14 C -0.159 4.159 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.242 4.242 25 C 0.006 3.994 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.151 0.849 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.945 -22.703 -10.237 26.141 hybrid contribution -0.071 0.725 2.001 2.130 sum 7.874 -21.977 -8.236 24.755 Atomic orbital electron populations 1.21733 0.94687 1.02236 1.02530 1.21701 0.96701 0.95621 1.02871 1.21388 0.78462 0.98886 1.02492 1.55589 1.15701 1.27950 1.88833 1.01421 0.72622 0.72641 0.73951 1.93563 1.78794 1.79632 1.43522 1.93566 1.31069 1.83977 1.87289 1.30212 1.10821 1.23130 1.19550 1.20500 0.94687 0.94235 0.89885 1.20676 1.00705 1.01128 1.02194 1.18243 0.91158 0.86337 0.87769 1.45386 1.32532 1.36317 1.20907 1.21799 0.87159 0.91276 1.00788 1.21872 1.01951 0.97367 0.94700 1.19021 0.91425 0.93260 0.97540 1.21143 1.12493 1.17968 1.04750 0.92708 1.25025 0.95625 0.97367 0.96381 1.69944 1.15715 1.35169 1.32431 0.86623 0.77585 0.80505 0.83088 1.20200 1.21193 1.20214 1.20825 1.03543 1.04688 0.95178 1.20594 0.92171 0.90211 0.96429 0.92239 0.92200 0.92183 0.91159 0.91269 0.91451 0.90153 0.75045 0.84809 0.85484 0.76259 0.91885 0.91905 0.92648 0.92627 0.96290 0.96302 0.92782 0.84890 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.67 6.08 -26.73 -0.16 -0.83 16 3 C 0.11 0.76 6.22 -4.04 -0.03 0.73 16 4 N -1.12 -8.21 6.00 -10.61 -0.06 -8.27 16 5 S 2.70 28.84 5.74 -107.50 -0.62 28.22 16 6 O -0.97 -12.95 16.74 -57.17 -0.96 -13.91 16 7 O -0.97 -12.63 17.28 -57.17 -0.99 -13.62 16 8 C -0.75 -8.40 5.95 -39.54 -0.24 -8.64 16 9 C 0.03 0.30 9.51 -39.61 -0.38 -0.07 16 10 C -0.22 -2.53 9.90 -39.38 -0.39 -2.92 16 11 C 0.28 3.50 6.65 -83.79 -0.56 2.94 16 12 N -0.73 -9.38 5.73 -58.63 -0.34 -9.71 16 13 C 0.11 1.70 4.91 -4.04 -0.02 1.68 16 14 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 15 C 0.03 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.22 -2.76 9.31 -39.38 -0.37 -3.12 16 25 C 0.03 0.31 9.51 -39.61 -0.38 -0.07 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.56 7.75 -51.93 -0.40 0.16 16 33 H 0.42 2.20 8.65 -34.47 -0.30 1.90 16 34 H 0.13 1.23 7.61 -52.49 -0.40 0.83 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.40 4.57 8.49 -40.82 -0.35 4.22 16 37 H 0.06 0.97 7.96 -51.93 -0.41 0.56 16 38 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 1.62 6.73 -52.48 -0.35 1.26 16 45 H 0.14 1.35 7.61 -52.49 -0.40 0.95 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.45 386.67 -11.47 -44.92 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.22 Total: 1.50 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -2.83 Total: -25.65 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.34 Total: -43.33 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.94 Total: -27.53 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 28.84 SS G_CDS: -0.62 Total: 28.22 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.45 -11.47 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.046 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds