Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46502 * 109.47140 * 180.02562 * 3 2 1 5 5 S 1.65600 * 119.99910 * 165.00217 * 4 3 2 6 6 O 1.42099 * 106.40302 * 311.45387 * 5 4 3 7 7 O 1.42108 * 106.40004 * 178.54037 * 5 4 3 8 8 C 1.76195 * 107.22277 * 64.99718 * 5 4 3 9 9 C 1.38292 * 119.92318 * 89.99587 * 8 5 4 10 10 C 1.38103 * 120.06781 * 179.97438 * 9 8 5 11 11 C 1.38907 * 119.93251 * 359.97438 * 10 9 8 12 12 N 1.39668 * 120.07688 * 179.97438 * 11 10 9 13 13 C 1.46506 * 120.00181 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99896 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47454 * 60.00119 * 20 18 16 22 22 H 1.48496 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46926 * 299.99910 * 20 18 16 24 24 C 1.38907 * 119.84667 * 0.25939 * 11 10 9 25 25 C 1.38108 * 119.92754 * 359.48722 * 24 11 10 26 26 H 1.09000 * 109.46674 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46734 * 299.99719 * 1 2 3 28 28 H 1.08992 * 109.47320 * 59.99936 * 1 2 3 29 29 H 1.08998 * 109.46734 * 240.00281 * 2 1 3 30 30 H 1.08995 * 109.47532 * 119.99578 * 2 1 3 31 31 H 1.09003 * 109.47306 * 60.00088 * 3 2 1 32 32 H 1.09005 * 109.47401 * 300.00200 * 3 2 1 33 33 H 0.96998 * 119.99662 * 344.99637 * 4 3 2 34 34 H 1.07994 * 119.96192 * 359.96035 * 9 8 5 35 35 H 1.08003 * 120.03201 * 179.97438 * 10 9 8 36 36 H 0.97001 * 120.00568 * 0.02562 * 12 11 10 37 37 H 1.09001 * 109.47060 * 300.00571 * 13 12 11 38 38 H 1.09004 * 109.47073 * 60.00060 * 13 12 11 39 39 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 40 40 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 41 41 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 42 42 H 1.09004 * 109.47298 * 59.99717 * 15 14 13 43 43 H 0.97007 * 119.99539 * 179.97438 * 19 18 16 44 44 H 1.08004 * 120.03686 * 179.72396 * 24 11 10 45 45 H 1.07998 * 119.96672 * 180.25929 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 16 4.3328 2.8280 -0.3719 6 8 3.7513 3.3353 -1.5651 7 8 5.7137 2.5145 -0.2526 8 6 3.9781 4.0024 0.8928 9 6 4.7801 4.0686 2.0174 10 6 4.5052 4.9884 3.0102 11 6 3.4220 5.8479 2.8781 12 7 3.1408 6.7789 3.8806 13 6 1.9976 7.6842 3.7398 14 6 1.9146 8.5954 4.9660 15 6 0.7203 9.5404 4.8193 16 6 0.6382 10.4375 6.0274 17 1 1.3653 10.3433 6.8204 18 6 -0.3647 11.3792 6.1199 19 7 -1.2498 11.4942 5.1540 20 14 -0.4661 12.4917 7.6170 21 1 0.7834 13.2862 7.7290 22 1 -1.6253 13.4088 7.4746 23 1 -0.6375 11.6639 8.8380 24 6 2.6155 5.7754 1.7494 25 6 2.8991 4.8568 0.7578 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9901 0.6312 0.2165 34 1 5.6222 3.4003 2.1194 35 1 5.1317 5.0393 3.8884 36 1 3.7024 6.8261 4.6701 37 1 2.1236 8.2920 2.8437 38 1 1.0803 7.1011 3.6572 39 1 1.7887 7.9878 5.8622 40 1 2.8318 9.1784 5.0482 41 1 0.8458 10.1480 3.9230 42 1 -0.1968 8.9570 4.7373 43 1 -1.9556 12.1565 5.2192 44 1 1.7699 6.4391 1.6456 45 1 2.2750 4.8027 -0.1219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -99.693016 kcal Electronic energy + Delta-G solvation = -24504.861729 eV Core-core repulsion = 20840.033852 eV Total energy + Delta-G solvation = -3664.827877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51076 -38.31009 -37.53321 -37.20803 -36.89502 -35.51024 -33.47580 -32.99470 -32.00690 -30.51086 -28.04688 -26.53035 -25.24895 -23.96729 -22.93117 -22.50998 -21.96922 -20.42767 -19.02833 -18.55166 -18.42608 -17.90614 -17.36005 -16.75469 -16.46422 -16.38780 -16.15232 -15.80885 -15.51446 -14.96186 -14.54137 -14.44705 -14.33044 -14.15453 -13.98874 -13.73138 -13.67539 -13.59845 -13.48757 -13.17803 -13.09683 -12.78267 -12.60948 -12.42979 -12.42130 -12.05863 -11.95241 -11.89543 -11.84664 -11.65376 -11.47826 -11.24800 -11.23020 -10.56965 -10.42121 -10.03884 -8.71108 -8.22422 -6.33297 -0.51504 0.08578 0.40448 1.39981 1.41990 1.50023 2.10228 2.30352 2.41938 2.59634 2.88880 3.11570 3.39543 3.80879 3.94687 3.97455 4.08080 4.16876 4.18356 4.28951 4.34125 4.47015 4.51500 4.58322 4.63861 4.74232 4.85373 4.89917 4.91515 4.96890 5.08126 5.11607 5.12762 5.21338 5.22679 5.24985 5.32427 5.47600 5.50046 5.68480 5.74265 5.81546 6.14637 6.14906 6.23615 6.67315 6.83637 7.36230 8.89101 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.002036 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.162212 B =13750.572584 C =14580.240040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C 0.106 3.894 4 N -1.108 6.108 5 S 2.722 3.278 6 O -0.994 6.994 7 O -0.991 6.991 8 C -0.745 4.745 9 C 0.022 3.978 10 C -0.222 4.222 11 C 0.261 3.739 12 N -0.726 5.726 13 C 0.129 3.871 14 C -0.105 4.105 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.062 0.938 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.234 4.234 25 C 0.020 3.980 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.427 0.573 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H -0.005 1.005 42 H -0.003 1.003 43 H 0.264 0.736 44 H 0.131 0.869 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -24.502 -8.354 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C -0.020 4.020 4 N -0.871 5.871 5 S 2.814 3.186 6 O -0.984 6.984 7 O -0.982 6.982 8 C -0.837 4.837 9 C 0.001 3.999 10 C -0.245 4.245 11 C 0.152 3.848 12 N -0.351 5.351 13 C 0.005 3.995 14 C -0.142 4.142 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.257 4.257 25 C 0.000 4.000 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.264 0.736 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.247 0.753 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.073 0.927 44 H 0.148 0.852 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.951 -23.953 -9.184 27.171 hybrid contribution -0.381 1.019 1.614 1.947 sum 8.570 -22.934 -7.570 25.627 Atomic orbital electron populations 1.21752 0.94536 1.02685 1.02377 1.21692 0.96750 0.94529 1.03580 1.21566 0.77709 1.00136 1.02587 1.55263 1.16029 1.27248 1.88521 1.00646 0.71910 0.72733 0.73278 1.93527 1.79197 1.80513 1.45142 1.93530 1.32735 1.84388 1.87515 1.30341 1.10577 1.23096 1.19694 1.20808 0.95090 0.94427 0.89555 1.20933 1.00252 1.00329 1.02969 1.18390 0.91903 0.86783 0.87730 1.45091 1.32144 1.36306 1.21602 1.21402 0.88197 0.91096 0.98852 1.21573 0.99348 0.96846 0.96477 1.18922 0.93041 0.93568 0.95661 1.21648 1.12511 1.18386 1.05716 0.92027 1.25964 0.95329 0.99089 0.99460 1.70078 1.16479 1.36104 1.34543 0.85527 0.77774 0.78493 0.79423 1.19255 1.21012 1.19136 1.20953 1.03858 1.05165 0.95756 1.20766 0.92555 0.90037 0.96645 0.91494 0.92364 0.92389 0.90751 0.90280 0.90969 0.90618 0.73614 0.82870 0.83280 0.75257 0.92456 0.92082 0.91961 0.92168 0.98674 0.98478 0.92738 0.85156 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.13 -1.09 6.08 30.60 0.19 -0.90 16 3 C 0.11 1.27 6.22 86.38 0.54 1.80 16 4 N -1.11 -14.52 6.00 -187.47 -1.12 -15.65 16 5 S 2.72 55.26 5.74 -56.49 -0.32 54.93 16 6 O -0.99 -26.15 16.74 -128.00 -2.14 -28.30 16 7 O -0.99 -24.64 17.28 -128.00 -2.21 -26.85 16 8 C -0.75 -15.88 5.95 22.29 0.13 -15.74 16 9 C 0.02 0.43 9.51 22.25 0.21 0.64 16 10 C -0.22 -4.57 9.90 22.40 0.22 -4.35 16 11 C 0.26 6.31 6.65 38.21 0.25 6.57 16 12 N -0.73 -17.79 5.73 -339.41 -1.95 -19.74 16 13 C 0.13 3.84 4.91 86.38 0.42 4.27 16 14 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 15 C 0.03 1.27 4.97 29.85 0.15 1.42 16 16 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 19 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 20 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 C -0.23 -5.77 9.31 22.40 0.21 -5.57 16 25 C 0.02 0.46 9.51 22.25 0.21 0.67 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.99 7.75 -2.38 -0.02 0.97 16 33 H 0.43 3.70 8.65 -96.74 -0.84 2.86 16 34 H 0.15 2.44 7.61 -2.91 -0.02 2.42 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.41 8.57 8.49 -92.71 -0.79 7.79 16 37 H 0.06 1.78 7.96 -2.39 -0.02 1.76 16 38 H 0.06 1.84 7.94 -2.38 -0.02 1.83 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.29 16 42 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 43 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 44 H 0.13 3.20 6.73 -2.91 -0.02 3.18 16 45 H 0.15 2.86 7.61 -2.91 -0.02 2.84 16 Total: -1.00 -71.15 386.67 -1.96 -73.11 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.63 Total: 16.98 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.11 Total: -44.45 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.79 Total: -90.46 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -4.35 Total: -55.15 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 55.26 SS G_CDS: -0.32 Total: 54.93 kcal Total: -71.15 -1.96 -73.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.578 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds