Wall clock time and date at job start Tue Mar 31 2020 15:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.53000 * 109.47690 * 120.00649 * 2 1 3 5 5 C 1.53000 * 109.47341 * 184.99713 * 4 2 1 6 6 C 1.50701 * 109.46919 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99705 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00288 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99960 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46857 * 90.00078 * 10 8 6 12 12 H 1.48496 * 109.47379 * 210.00241 * 10 8 6 13 13 H 1.48507 * 109.47223 * 330.00608 * 10 8 6 14 14 N 1.46509 * 109.46916 * 240.00777 * 2 1 3 15 15 S 1.65604 * 119.99844 * 94.99956 * 14 2 1 16 16 O 1.42095 * 106.40018 * 311.45546 * 15 14 2 17 17 O 1.42098 * 106.39919 * 178.53897 * 15 14 2 18 18 C 1.76201 * 107.21824 * 64.99985 * 15 14 2 19 19 C 1.38234 * 120.00103 * 90.00267 * 18 15 14 20 20 C 1.38238 * 119.99675 * 180.27958 * 19 18 15 21 21 C 1.38229 * 120.00124 * 359.45911 * 20 19 18 22 22 C 1.50699 * 120.00230 * 180.28369 * 21 20 19 23 23 C 1.52992 * 109.47330 * 270.27821 * 22 21 20 24 24 N 1.46902 * 109.47649 * 179.97438 * 23 22 21 25 25 C 1.38234 * 119.99957 * 0.56005 * 21 20 19 26 26 C 1.38234 * 119.99657 * 270.01898 * 18 15 14 27 27 H 1.08997 * 109.47074 * 299.98897 * 1 2 3 28 28 H 1.09001 * 109.47625 * 59.99384 * 1 2 3 29 29 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46917 * 305.00316 * 4 2 1 31 31 H 1.09003 * 109.46961 * 64.99787 * 4 2 1 32 32 H 1.08998 * 109.47102 * 300.00153 * 5 4 2 33 33 H 1.08999 * 109.46551 * 60.00101 * 5 4 2 34 34 H 0.96996 * 120.00135 * 180.02562 * 9 8 6 35 35 H 0.96997 * 119.99899 * 274.99529 * 14 2 1 36 36 H 1.08002 * 119.99744 * 359.97438 * 19 18 15 37 37 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 38 38 H 1.09007 * 109.47085 * 30.27493 * 22 21 20 39 39 H 1.08998 * 109.47270 * 150.26989 * 22 21 20 40 40 H 1.09000 * 109.47063 * 299.99607 * 23 22 21 41 41 H 1.09007 * 109.47367 * 59.99406 * 23 22 21 42 42 H 1.00894 * 111.00086 * 179.97438 * 24 23 22 43 43 H 1.00900 * 110.99513 * 303.95889 * 24 23 22 44 44 H 1.08001 * 120.00274 * 179.72697 * 25 21 20 45 45 H 1.07997 * 120.00460 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5442 7 1 3.3688 -1.8040 3.2132 8 6 5.4184 -1.3595 2.8159 9 7 6.2689 -0.7739 2.0014 10 14 6.0412 -2.2402 4.3410 11 1 6.3219 -3.6609 4.0122 12 1 7.2871 -1.5866 4.8161 13 1 5.0096 -2.1735 5.4072 14 7 2.0182 -0.6905 -1.1963 15 16 2.4121 0.1775 -2.5506 16 8 1.3245 1.0596 -2.7921 17 8 2.8775 -0.7630 -3.5087 18 6 3.7926 1.1913 -2.1371 19 6 5.0780 0.7160 -2.3183 20 6 6.1611 1.5092 -1.9884 21 6 5.9588 2.7818 -1.4881 22 6 7.1396 3.6489 -1.1345 23 6 7.5307 3.4077 0.3248 24 7 8.6821 4.2525 0.6693 25 6 4.6735 3.2569 -1.3066 26 6 3.5903 2.4617 -1.6313 27 1 -0.3633 0.5136 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6054 -0.2620 2.1369 31 1 1.7517 -1.7717 1.2054 32 1 3.9994 -1.0728 0.4257 33 1 3.8532 0.4368 1.3572 34 1 7.2195 -0.7996 2.1924 35 1 2.1109 -1.6560 -1.1952 36 1 5.2360 -0.2769 -2.7128 37 1 7.1653 1.1362 -2.1258 38 1 7.9803 3.3996 -1.7820 39 1 6.8743 4.6973 -1.2711 40 1 6.6901 3.6571 0.9722 41 1 7.7960 2.3593 0.4613 42 1 8.9596 4.1117 1.6290 43 1 9.4538 4.0856 0.0411 44 1 4.5154 4.2496 -0.9115 45 1 2.5861 2.8332 -1.4900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:16 Heat of formation + Delta-G solvation = -76.519009 kcal Electronic energy + Delta-G solvation = -26605.097492 eV Core-core repulsion = 22941.274516 eV Total energy + Delta-G solvation = -3663.822976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.26217 -37.19537 -36.65295 -35.62740 -35.47987 -33.15269 -32.04851 -30.85046 -30.72606 -29.06104 -27.67148 -25.16187 -23.07649 -22.73425 -21.80345 -21.04859 -20.32003 -19.32735 -17.82812 -17.13698 -16.42944 -16.13401 -15.92938 -15.43401 -15.13317 -14.57988 -14.50635 -14.36118 -13.96037 -13.73763 -13.50946 -13.28695 -13.16402 -12.77718 -12.70218 -12.39697 -11.93545 -11.88655 -11.84185 -11.78254 -11.72455 -11.39517 -11.33939 -11.30825 -10.98828 -10.87452 -10.64134 -10.55271 -10.36526 -9.89795 -9.64543 -9.20429 -8.97662 -8.88578 -8.79296 -8.70012 -8.39756 -6.05957 -4.07543 0.67235 1.06098 1.55702 3.24551 3.25365 3.31949 3.35286 3.67016 4.05945 4.39496 4.47526 4.58276 4.86935 5.05187 5.08071 5.17672 5.20300 5.29944 5.30429 5.47109 5.51368 5.55844 5.64861 5.66713 5.84610 5.91841 5.97582 6.12886 6.15269 6.16208 6.19113 6.28581 6.36872 6.42301 6.63486 6.64760 6.72449 7.03558 7.04898 7.06806 7.33426 7.38004 7.62149 7.76518 7.93740 8.36442 8.98800 9.56129 11.03992 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.007464 B = 0.006426 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.342619 B = 4356.501806 C = 7142.066431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.150 3.850 3 H 0.076 0.924 4 C -0.119 4.119 5 C 0.024 3.976 6 C -0.520 4.520 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.889 5.889 10 Si 0.887 3.113 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.275 1.275 14 N -1.101 6.101 15 S 2.696 3.304 16 O -0.966 6.966 17 O -0.970 6.970 18 C -0.674 4.674 19 C -0.003 4.003 20 C -0.126 4.126 21 C -0.024 4.024 22 C -0.082 4.082 23 C 0.063 3.937 24 N -0.853 5.853 25 C -0.137 4.137 26 C -0.020 4.020 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.257 0.743 35 H 0.418 0.582 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.344 0.656 43 H 0.336 0.664 44 H 0.128 0.872 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 7.171 -6.940 10.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.043 3.957 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.013 4.013 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.142 4.142 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 N -0.861 5.861 15 S 2.786 3.214 16 O -0.956 6.956 17 O -0.960 6.960 18 C -0.761 4.761 19 C -0.022 4.022 20 C -0.145 4.145 21 C -0.025 4.025 22 C -0.120 4.120 23 C -0.067 4.067 24 N -0.382 5.382 25 C -0.156 4.156 26 C -0.039 4.039 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.066 0.934 35 H 0.253 0.747 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.407 7.983 -7.913 11.495 hybrid contribution 1.701 -1.617 1.684 2.889 sum -0.705 6.366 -6.229 8.935 Atomic orbital electron populations 1.22332 0.95837 1.02349 1.02362 1.20938 0.93202 0.95946 0.85575 0.90549 1.21993 1.00573 0.99194 0.93991 1.19079 0.88151 0.97064 0.97017 1.21248 0.91933 1.34280 1.08372 0.92835 1.24972 0.97123 0.95597 0.96496 1.69975 1.02070 1.43979 1.36850 0.86683 0.78303 0.79845 0.83664 1.20762 1.21391 1.19945 1.55428 1.81365 1.19263 1.30078 1.01662 0.73810 0.73313 0.72613 1.93554 1.51303 1.66763 1.83935 1.93557 1.82293 1.61771 1.58413 1.30753 1.16350 1.10729 1.18267 1.20796 0.90808 0.98744 0.91871 1.21061 0.99159 0.93823 1.00427 1.20057 0.94737 0.94242 0.93474 1.20659 0.95376 0.99258 0.96702 1.21758 0.94189 0.95551 0.95207 1.58775 1.10350 1.60858 1.08265 1.21060 0.91998 1.00505 1.02000 1.20810 0.99664 0.91555 0.91864 0.91725 0.91808 0.92323 0.91956 0.92506 0.96236 0.96791 0.93356 0.74652 0.84590 0.85503 0.91037 0.90111 0.90516 0.93930 0.84371 0.85222 0.85408 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.52 37.15 0.35 -1.92 16 2 C 0.15 2.35 2.77 -67.93 -0.19 2.16 16 3 H 0.08 1.18 7.23 -51.93 -0.38 0.81 16 4 C -0.12 -2.19 4.75 -26.73 -0.13 -2.32 16 5 C 0.02 0.57 4.86 -27.88 -0.14 0.43 16 6 C -0.52 -13.90 9.11 -34.44 -0.31 -14.22 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 10 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 N -1.10 -16.94 4.93 -4.89 -0.02 -16.96 16 15 S 2.70 43.35 5.65 -107.50 -0.61 42.75 16 16 O -0.97 -16.58 16.54 -57.17 -0.95 -17.53 16 17 O -0.97 -17.50 17.28 -57.17 -0.99 -18.49 16 18 C -0.67 -10.95 5.82 -39.58 -0.23 -11.18 16 19 C 0.00 -0.05 9.52 -39.58 -0.38 -0.42 16 20 C -0.13 -1.94 9.70 -39.58 -0.38 -2.32 16 21 C -0.02 -0.35 5.13 -104.63 -0.54 -0.88 16 22 C -0.08 -0.99 5.60 -27.89 -0.16 -1.15 16 23 C 0.06 0.85 6.77 -3.83 -0.03 0.83 16 24 N -0.85 -9.61 9.62 -10.37 -0.10 -9.71 16 25 C -0.14 -1.95 9.70 -39.58 -0.38 -2.33 16 26 C -0.02 -0.30 8.90 -39.58 -0.35 -0.65 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.86 7.64 -51.93 -0.40 0.46 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.42 5.95 8.84 -34.48 -0.30 5.65 16 36 H 0.14 2.12 7.62 -52.49 -0.40 1.72 16 37 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.34 3.62 9.08 -39.30 -0.36 3.26 16 43 H 0.34 3.20 8.99 -39.29 -0.35 2.85 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.14 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -32.36 385.89 -11.26 -43.62 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.17 Total: 11.23 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: -2.96 Total: -32.46 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.61 Total: -50.84 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.93 Total: -36.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 43.35 SS G_CDS: -0.61 Total: 42.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.36 -11.26 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.899 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds