Wall clock time and date at job start Tue Mar 31 2020 15:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46728 * 2 1 4 4 C 1.53005 * 109.46879 * 239.99947 * 2 1 3 5 5 C 1.52997 * 109.46784 * 174.99530 * 4 2 1 6 6 C 1.50700 * 109.47185 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99669 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00291 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47231 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46993 * 119.99952 * 10 8 6 13 13 H 1.48502 * 109.47098 * 239.99394 * 10 8 6 14 14 N 1.46502 * 109.47298 * 120.00195 * 2 1 3 15 15 C 1.39672 * 119.99793 * 65.86808 * 14 2 1 16 16 C 1.38931 * 120.07013 * 85.83577 * 15 14 2 17 17 C 1.38092 * 119.92329 * 180.22387 * 16 15 14 18 18 C 1.38307 * 120.06995 * 359.77508 * 17 16 15 19 19 C 1.38256 * 120.15300 * 359.97345 * 18 17 16 20 20 C 1.38125 * 120.07624 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.03863 * 179.97438 * 20 19 18 22 22 N 1.46903 * 109.47524 * 303.32139 * 21 20 19 23 23 S 1.65599 * 119.99806 * 245.87369 * 14 2 1 24 24 C 1.81400 * 104.44773 * 273.92576 * 23 14 2 25 25 O 1.42101 * 104.27567 * 29.99671 * 23 14 2 26 26 O 1.42097 * 104.27645 * 157.85343 * 23 14 2 27 27 H 1.08998 * 109.47061 * 301.72919 * 1 2 3 28 28 H 1.08997 * 109.47088 * 61.73520 * 1 2 3 29 29 H 1.09001 * 109.47184 * 181.73169 * 1 2 3 30 30 H 1.08995 * 109.47288 * 294.99718 * 4 2 1 31 31 H 1.09002 * 109.46969 * 55.00393 * 4 2 1 32 32 H 1.09000 * 109.47674 * 300.00506 * 5 4 2 33 33 H 1.09008 * 109.46942 * 60.00376 * 5 4 2 34 34 H 0.97000 * 120.00151 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.04149 * 359.97438 * 16 15 14 36 36 H 1.07996 * 119.96269 * 179.78801 * 17 16 15 37 37 H 1.08006 * 119.91917 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.96282 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47351 * 183.31743 * 21 20 19 40 40 H 1.09000 * 109.47135 * 63.32130 * 21 20 19 41 41 H 1.00900 * 110.99916 * 173.57641 * 22 21 20 42 42 H 1.00899 * 110.99436 * 297.53500 * 22 21 20 43 43 H 1.09001 * 109.47014 * 51.62733 * 24 23 14 44 44 H 1.08999 * 109.46660 * 171.62308 * 24 23 14 45 45 H 1.08990 * 109.47372 * 291.62626 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0671 -1.3231 -2.5446 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3600 -2.8159 9 7 6.2689 -0.7752 -2.0010 10 14 6.0409 -2.2393 -4.3420 11 1 4.8909 -2.8101 -5.0881 12 1 6.7642 -1.2745 -5.2087 13 1 6.9626 -3.3327 -3.9418 14 7 2.0184 -0.6907 1.1961 15 6 1.7849 -2.0583 1.3571 16 6 2.6583 -2.9839 0.7997 17 6 2.4220 -4.3354 0.9568 18 6 1.3200 -4.7677 1.6720 19 6 0.4517 -3.8492 2.2323 20 6 0.6827 -2.4959 2.0800 21 6 -0.2645 -1.4955 2.6906 22 7 -1.6245 -1.7415 2.1926 23 16 2.8471 0.1502 2.3574 24 6 4.5699 0.1270 1.7901 25 8 2.3155 1.4660 2.2836 26 8 2.6982 -0.6352 3.5321 27 1 -0.3633 0.5404 0.8741 28 1 -0.3633 0.4866 -0.9051 29 1 -0.3633 -1.0272 0.0311 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 3.8531 0.4370 -1.3574 33 1 3.9994 -1.0728 -0.4260 34 1 7.2196 -0.8015 -2.1917 35 1 3.5188 -2.6469 0.2408 36 1 3.0986 -5.0554 0.5209 37 1 1.1373 -5.8253 1.7929 38 1 -0.4077 -4.1902 2.7905 39 1 0.0459 -0.4871 2.4168 40 1 -0.2510 -1.5977 3.7757 41 1 -2.2944 -1.1532 2.6651 42 1 -1.6721 -1.6133 1.1929 43 1 4.6168 0.4701 0.7566 44 1 5.1684 0.7861 2.4191 45 1 4.9598 -0.8888 1.8538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:07 Heat of formation + Delta-G solvation = -44.846871 kcal Electronic energy + Delta-G solvation = -28070.854418 eV Core-core repulsion = 24408.404848 eV Total energy + Delta-G solvation = -3662.449569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88195 -37.16095 -36.56140 -35.74743 -34.80227 -33.45229 -31.90940 -30.32632 -29.77645 -29.09376 -28.28842 -25.29201 -24.78873 -22.61429 -21.75985 -20.93822 -20.14484 -18.85094 -17.68076 -16.63835 -16.36799 -16.22809 -16.10517 -15.36015 -15.17874 -14.90503 -14.58751 -13.99211 -13.82471 -13.75788 -13.27365 -13.11589 -12.79853 -12.70427 -12.55244 -12.44188 -12.30010 -12.02410 -11.88842 -11.83392 -11.77951 -11.39015 -11.35399 -11.16500 -11.06275 -10.97625 -10.70554 -10.57491 -10.31376 -9.92211 -9.59049 -9.20444 -8.86564 -8.65527 -8.46374 -8.44373 -8.36601 -6.12892 -4.13980 0.46952 1.54389 1.71718 2.77522 3.23089 3.32126 3.35542 3.94929 4.03127 4.36477 4.42061 4.63839 4.98267 5.03158 5.17072 5.23561 5.24743 5.37021 5.39827 5.45807 5.48733 5.54841 5.62108 5.74857 5.76878 5.89712 6.03214 6.11035 6.13229 6.24516 6.26761 6.38467 6.50870 6.69736 6.71434 6.79534 6.84080 6.95645 6.99537 7.11698 7.40642 7.44719 7.52409 7.63336 7.86432 8.30168 8.92029 9.51125 10.98179 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.005373 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.704991 B = 5209.676680 C = 5902.321907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.095 0.905 4 C -0.125 4.125 5 C 0.013 3.987 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.941 5.941 15 C 0.152 3.848 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.096 4.096 20 C -0.068 4.068 21 C 0.096 3.904 22 N -0.845 5.845 23 S 2.595 3.405 24 C -0.667 4.667 25 O -0.962 6.962 26 O -0.955 6.955 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.041 0.959 40 H 0.082 0.918 41 H 0.339 0.661 42 H 0.342 0.658 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -1.847 8.303 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.113 0.887 4 C -0.164 4.164 5 C -0.024 4.024 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.772 5.772 15 C 0.059 3.941 16 C -0.130 4.130 17 C -0.134 4.134 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.034 4.034 22 N -0.376 5.376 23 S 2.693 3.307 24 C -0.818 4.818 25 O -0.952 6.952 26 O -0.946 6.946 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.168 0.832 44 H 0.139 0.861 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.050 -2.073 9.375 13.899 hybrid contribution 1.196 0.339 -1.773 2.165 sum -8.854 -1.734 7.602 11.798 Atomic orbital electron populations 1.22296 0.96045 1.01943 1.01699 1.21178 0.93827 0.96084 0.84735 0.88691 1.22080 1.00286 0.99968 0.94057 1.19344 0.88574 0.96959 0.97522 1.21221 0.91841 1.34156 1.08231 0.92635 1.24974 0.97098 0.95563 0.96593 1.69923 1.02408 1.44123 1.37037 0.86587 0.78876 0.79490 0.83353 1.19775 1.21100 1.21072 1.55249 1.69937 1.15315 1.36731 1.16961 0.95515 0.82382 0.99269 1.21947 1.00247 0.92907 0.97882 1.21081 0.97787 0.95483 0.99031 1.21178 0.95127 0.99329 0.98349 1.20783 0.99062 0.91733 0.99887 1.19878 0.94687 0.94589 0.98014 1.20707 0.87431 0.95890 0.99396 1.58799 1.05520 1.62942 1.10313 1.05324 0.77707 0.73799 0.73897 1.30596 1.24230 1.11909 1.15058 1.93575 1.77067 1.38147 1.86423 1.93585 1.85848 1.70079 1.45066 0.92840 0.91467 0.92065 0.91950 0.92004 0.96826 0.95664 0.93011 0.83439 0.85874 0.86353 0.85720 0.94125 0.89990 0.84850 0.84423 0.83246 0.86087 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 7.53 37.16 0.28 -1.83 16 2 C 0.15 2.29 2.49 -67.93 -0.17 2.12 16 3 H 0.10 1.51 7.12 -51.93 -0.37 1.14 16 4 C -0.13 -2.27 4.17 -26.73 -0.11 -2.38 16 5 C 0.01 0.28 3.59 -27.88 -0.10 0.18 16 6 C -0.52 -13.21 9.11 -34.44 -0.31 -13.52 16 7 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -24.53 13.29 55.43 0.74 -23.80 16 10 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 N -0.94 -14.97 1.03 -52.17 -0.05 -15.03 16 15 C 0.15 2.43 3.39 -83.79 -0.28 2.15 16 16 C -0.11 -1.81 8.26 -39.38 -0.33 -2.13 16 17 C -0.11 -1.67 10.04 -39.61 -0.40 -2.07 16 18 C -0.12 -1.59 10.04 -39.55 -0.40 -1.98 16 19 C -0.10 -1.30 9.51 -39.62 -0.38 -1.68 16 20 C -0.07 -1.01 4.81 -104.42 -0.50 -1.52 16 21 C 0.10 1.29 5.85 -4.98 -0.03 1.26 16 22 N -0.84 -9.29 9.38 -11.41 -0.11 -9.39 16 23 S 2.60 42.17 5.68 -107.50 -0.61 41.56 16 24 C -0.67 -10.32 10.10 101.05 1.02 -9.30 16 25 O -0.96 -17.22 16.79 -57.54 -0.97 -18.19 16 26 O -0.96 -17.03 16.88 -57.54 -0.97 -18.00 16 27 H 0.05 0.68 6.83 -51.93 -0.35 0.32 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.79 5.19 -51.93 -0.27 0.52 16 30 H 0.06 1.15 6.50 -51.93 -0.34 0.82 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.01 0.32 7.89 -51.93 -0.41 -0.09 16 33 H 0.03 0.55 4.01 -51.92 -0.21 0.34 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.15 2.71 5.54 -52.49 -0.29 2.42 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.04 0.58 4.53 -51.93 -0.24 0.34 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.34 3.05 9.08 -39.29 -0.36 2.69 16 42 H 0.34 3.68 6.83 -39.29 -0.27 3.41 16 43 H 0.15 2.61 6.27 -51.92 -0.33 2.28 16 44 H 0.12 1.56 8.14 -51.92 -0.42 1.13 16 45 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -30.37 358.97 -9.74 -40.11 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.35 Total: 11.06 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -1.80 Total: -29.24 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.58 Total: -48.22 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.94 Total: -36.19 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 42.17 SS G_CDS: -0.61 Total: 41.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.37 -9.74 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.739 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds