Wall clock time and date at job start Tue Mar 31 2020 15:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46728 * 2 1 4 4 C 1.53005 * 109.46879 * 239.99947 * 2 1 3 5 5 C 1.52997 * 109.46784 * 174.99530 * 4 2 1 6 6 C 1.50700 * 109.47185 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99669 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00291 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99929 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47231 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46993 * 119.99952 * 10 8 6 13 13 H 1.48502 * 109.47098 * 239.99394 * 10 8 6 14 14 N 1.46502 * 109.47298 * 120.00195 * 2 1 3 15 15 C 1.39672 * 119.99793 * 65.86808 * 14 2 1 16 16 C 1.38931 * 120.07013 * 85.83577 * 15 14 2 17 17 C 1.38092 * 119.92329 * 180.22387 * 16 15 14 18 18 C 1.38307 * 120.06995 * 359.77508 * 17 16 15 19 19 C 1.38256 * 120.15300 * 359.97345 * 18 17 16 20 20 C 1.38125 * 120.07624 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.03863 * 179.97438 * 20 19 18 22 22 N 1.46903 * 109.47524 * 303.32139 * 21 20 19 23 23 S 1.65599 * 119.99806 * 245.87369 * 14 2 1 24 24 C 1.81400 * 104.44773 * 273.92576 * 23 14 2 25 25 O 1.42101 * 104.27567 * 29.99671 * 23 14 2 26 26 O 1.42097 * 104.27645 * 157.85343 * 23 14 2 27 27 H 1.08998 * 109.47061 * 301.72919 * 1 2 3 28 28 H 1.08997 * 109.47088 * 61.73520 * 1 2 3 29 29 H 1.09001 * 109.47184 * 181.73169 * 1 2 3 30 30 H 1.08995 * 109.47288 * 294.99718 * 4 2 1 31 31 H 1.09002 * 109.46969 * 55.00393 * 4 2 1 32 32 H 1.09000 * 109.47674 * 300.00506 * 5 4 2 33 33 H 1.09008 * 109.46942 * 60.00376 * 5 4 2 34 34 H 0.97000 * 120.00151 * 179.97438 * 9 8 6 35 35 H 1.08001 * 120.04149 * 359.97438 * 16 15 14 36 36 H 1.07996 * 119.96269 * 179.78801 * 17 16 15 37 37 H 1.08006 * 119.91917 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.96282 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47351 * 183.31743 * 21 20 19 40 40 H 1.09000 * 109.47135 * 63.32130 * 21 20 19 41 41 H 1.00900 * 110.99916 * 173.57641 * 22 21 20 42 42 H 1.00899 * 110.99436 * 297.53500 * 22 21 20 43 43 H 1.09001 * 109.47014 * 51.62733 * 24 23 14 44 44 H 1.08999 * 109.46660 * 171.62308 * 24 23 14 45 45 H 1.08990 * 109.47372 * 291.62626 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0671 -1.3231 -2.5446 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3600 -2.8159 9 7 6.2689 -0.7752 -2.0010 10 14 6.0409 -2.2393 -4.3420 11 1 4.8909 -2.8101 -5.0881 12 1 6.7642 -1.2745 -5.2087 13 1 6.9626 -3.3327 -3.9418 14 7 2.0184 -0.6907 1.1961 15 6 1.7849 -2.0583 1.3571 16 6 2.6583 -2.9839 0.7997 17 6 2.4220 -4.3354 0.9568 18 6 1.3200 -4.7677 1.6720 19 6 0.4517 -3.8492 2.2323 20 6 0.6827 -2.4959 2.0800 21 6 -0.2645 -1.4955 2.6906 22 7 -1.6245 -1.7415 2.1926 23 16 2.8471 0.1502 2.3574 24 6 4.5699 0.1270 1.7901 25 8 2.3155 1.4660 2.2836 26 8 2.6982 -0.6352 3.5321 27 1 -0.3633 0.5404 0.8741 28 1 -0.3633 0.4866 -0.9051 29 1 -0.3633 -1.0272 0.0311 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 3.8531 0.4370 -1.3574 33 1 3.9994 -1.0728 -0.4260 34 1 7.2196 -0.8015 -2.1917 35 1 3.5188 -2.6469 0.2408 36 1 3.0986 -5.0554 0.5209 37 1 1.1373 -5.8253 1.7929 38 1 -0.4077 -4.1902 2.7905 39 1 0.0459 -0.4871 2.4168 40 1 -0.2510 -1.5977 3.7757 41 1 -2.2944 -1.1532 2.6651 42 1 -1.6721 -1.6133 1.1929 43 1 4.6168 0.4701 0.7566 44 1 5.1684 0.7861 2.4191 45 1 4.9598 -0.8888 1.8538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:06 Heat of formation + Delta-G solvation = -65.015048 kcal Electronic energy + Delta-G solvation = -28071.728975 eV Core-core repulsion = 24408.404848 eV Total energy + Delta-G solvation = -3663.324127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05308 -38.49959 -37.85175 -37.12919 -35.86536 -35.21075 -33.37198 -31.52357 -31.16249 -30.37698 -29.48599 -27.01382 -25.84607 -23.89637 -23.26169 -22.09728 -21.55804 -20.07967 -19.01038 -18.43969 -17.66094 -17.49564 -17.25745 -16.60008 -16.49613 -16.36043 -16.08066 -15.12854 -15.03655 -14.96569 -14.60032 -14.47450 -14.07879 -14.00338 -13.94307 -13.86264 -13.55703 -13.31485 -13.26922 -13.20071 -13.07175 -12.95785 -12.86251 -12.52060 -12.41577 -12.32676 -12.21121 -11.94696 -11.72816 -11.56083 -11.25874 -11.03576 -10.47280 -10.12251 -9.66732 -9.55871 -9.49540 -8.15035 -6.21193 -0.83330 0.41551 0.57081 1.38785 1.42602 1.49159 1.52211 2.43366 2.71773 2.82571 3.10768 3.20055 3.66921 3.76534 3.95350 3.96475 4.08531 4.15937 4.26230 4.29426 4.30537 4.42145 4.47029 4.63079 4.68798 4.75430 4.79366 4.85653 4.94072 4.98860 5.04018 5.21513 5.24771 5.30995 5.36452 5.55992 5.60601 5.68475 5.71981 5.79446 5.89662 5.96076 6.18644 6.28371 6.34647 6.61848 6.93610 7.46482 8.95525 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.005373 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.704991 B = 5209.676680 C = 5902.321907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.111 4.111 5 C 0.016 3.984 6 C -0.528 4.528 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.924 5.924 10 Si 0.947 3.053 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.282 1.282 14 N -0.938 5.938 15 C 0.139 3.861 16 C -0.129 4.129 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.076 4.076 21 C 0.099 3.901 22 N -0.838 5.838 23 S 2.609 3.391 24 C -0.666 4.666 25 O -0.978 6.978 26 O -0.970 6.970 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.064 0.936 32 H -0.010 1.010 33 H 0.027 0.973 34 H 0.260 0.740 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.352 0.648 42 H 0.345 0.655 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 -3.050 8.472 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.150 4.150 5 C -0.021 4.021 6 C -0.566 4.566 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.773 3.227 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.208 1.208 14 N -0.770 5.770 15 C 0.045 3.955 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.032 4.032 22 N -0.370 5.370 23 S 2.707 3.293 24 C -0.817 4.817 25 O -0.969 6.969 26 O -0.960 6.960 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.164 0.836 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.634 -3.273 9.544 15.400 hybrid contribution 1.678 0.676 -1.810 2.559 sum -9.956 -2.597 7.734 12.872 Atomic orbital electron populations 1.22235 0.93555 1.02608 1.02846 1.21158 0.95775 0.95342 0.83581 0.89162 1.21880 0.97372 1.00205 0.95567 1.19274 0.91452 0.94938 0.96425 1.21612 0.92011 1.33888 1.09128 0.92966 1.25683 0.97512 0.96416 0.99163 1.70027 1.02528 1.45419 1.38541 0.85675 0.78339 0.78399 0.80264 1.19155 1.21094 1.20801 1.55123 1.69894 1.15573 1.36405 1.17049 0.96188 0.81989 1.00248 1.21828 1.00008 0.94194 0.98967 1.21286 0.98698 0.94819 0.99338 1.21499 0.93846 1.00949 0.96732 1.21067 0.99573 0.91266 0.99531 1.20083 0.94482 0.95592 0.97737 1.20620 0.88384 0.95010 0.99167 1.58746 1.04459 1.63211 1.10608 1.04847 0.77616 0.73179 0.73621 1.30564 1.24437 1.12524 1.14212 1.93546 1.77546 1.39081 1.86736 1.93556 1.86134 1.70303 1.46011 0.92141 0.89892 0.91589 0.92199 0.91749 0.99142 0.95526 0.93081 0.86126 0.84766 0.83161 0.83886 0.95133 0.90214 0.83405 0.84102 0.85216 0.83551 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 7.53 71.98 0.54 -3.26 16 2 C 0.15 4.55 2.49 44.99 0.11 4.67 16 3 H 0.09 2.91 7.12 -2.39 -0.02 2.89 16 4 C -0.11 -4.07 4.17 30.60 0.13 -3.94 16 5 C 0.02 0.72 3.59 29.85 0.11 0.83 16 6 C -0.53 -27.44 9.11 25.60 0.23 -27.21 16 7 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.92 -51.65 13.29 21.45 0.28 -51.37 16 10 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 N -0.94 -29.90 1.03 -318.95 -0.33 -30.23 16 15 C 0.14 4.38 3.39 38.21 0.13 4.51 16 16 C -0.13 -4.29 8.26 22.40 0.18 -4.10 16 17 C -0.12 -3.42 10.04 22.25 0.22 -3.20 16 18 C -0.11 -2.64 10.04 22.29 0.22 -2.41 16 19 C -0.10 -2.36 9.51 22.25 0.21 -2.15 16 20 C -0.08 -2.13 4.81 -19.74 -0.09 -2.22 16 21 C 0.10 2.50 5.85 85.56 0.50 3.00 16 22 N -0.84 -16.40 9.38 -190.00 -1.78 -18.18 16 23 S 2.61 85.36 5.68 -56.49 -0.32 85.04 16 24 C -0.67 -21.12 10.10 113.37 1.14 -19.98 16 25 O -0.98 -35.08 16.79 -127.65 -2.14 -37.23 16 26 O -0.97 -34.41 16.88 -127.65 -2.16 -36.57 16 27 H 0.06 1.43 6.83 -2.39 -0.02 1.41 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.57 5.19 -2.39 -0.01 1.56 16 30 H 0.06 2.22 6.50 -2.39 -0.02 2.20 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H -0.01 -0.49 7.89 -2.39 -0.02 -0.51 16 33 H 0.03 1.21 4.01 -2.38 -0.01 1.20 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.12 4.62 5.54 -2.91 -0.02 4.60 16 36 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.03 0.83 4.53 -2.39 -0.01 0.82 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.35 5.45 9.08 -89.69 -0.81 4.63 16 42 H 0.34 6.57 6.83 -89.69 -0.61 5.95 16 43 H 0.13 4.74 6.27 -2.39 -0.01 4.73 16 44 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.13 4.14 8.14 -2.40 -0.02 4.12 16 Total: -1.00 -64.41 358.97 -0.71 -65.12 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.40 Total: 33.51 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 4.11 Total: -54.45 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -1.83 Total: -99.78 kcal Atomic # 8 Polarization: -69.49 SS G_CDS: -4.30 Total: -73.79 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 85.36 SS G_CDS: -0.32 Total: 85.04 kcal Total: -64.41 -0.71 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.102 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds