Wall clock time and date at job start Tue Mar 31 2020 15:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 C 1.52995 * 109.47551 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47710 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47625 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00587 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99572 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00512 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99910 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00310 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47126 * 89.99641 * 13 11 9 15 15 H 1.48497 * 109.47294 * 209.99564 * 13 11 9 16 16 H 1.48501 * 109.46823 * 329.99885 * 13 11 9 17 17 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 18 18 C 1.34780 * 119.99566 * 275.00168 * 17 2 1 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 2 21 21 O 1.42903 * 109.46878 * 179.97438 * 20 18 17 22 22 C 1.36234 * 116.99570 * 179.97438 * 21 20 18 23 23 C 1.38669 * 122.58502 * 179.73546 * 22 21 20 24 24 C 1.33430 * 114.88368 * 179.76287 * 23 22 21 25 25 S 1.75860 * 109.66024 * 0.47873 * 24 23 22 26 26 C 1.33626 * 122.59027 * 0.03057 * 22 21 20 27 27 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 28 28 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 30 30 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 31 31 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 32 32 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 33 33 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 34 34 H 1.09008 * 109.47326 * 300.00107 * 6 5 4 35 35 H 1.09000 * 109.47087 * 59.99338 * 6 5 4 36 36 H 1.09007 * 109.46548 * 299.99761 * 7 6 5 37 37 H 1.08995 * 109.47272 * 59.99043 * 7 6 5 38 38 H 0.97004 * 119.99565 * 359.97438 * 8 7 6 39 39 H 0.97001 * 119.99898 * 180.02562 * 12 11 9 40 40 H 0.96995 * 120.00423 * 94.99474 * 17 2 1 41 41 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 42 42 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 43 43 H 1.08004 * 122.55603 * 359.97438 * 23 22 21 44 44 H 1.08004 * 125.16650 * 180.23270 * 24 23 22 45 45 H 1.08004 * 125.19601 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5628 7 6 5.5997 -1.2275 -2.6270 8 7 6.0880 -1.9179 -3.8232 9 6 7.4300 -1.9543 -4.0929 10 1 8.1285 -1.4736 -3.4239 11 6 7.8928 -2.6090 -5.2261 12 7 7.0416 -3.1952 -6.0411 13 14 9.7235 -2.6592 -5.5937 14 1 10.3233 -3.8599 -4.9582 15 1 9.9320 -2.7204 -7.0626 16 1 10.3708 -1.4372 -5.0523 17 7 2.0184 -0.6907 1.1960 18 6 2.1471 -0.0184 2.3571 19 8 1.8590 1.1584 2.4116 20 6 2.6500 -0.7288 3.5873 21 8 2.6985 0.1895 4.6812 22 6 3.1341 -0.2959 5.8773 23 6 3.2321 0.4941 7.0127 24 6 3.6717 -0.1398 8.1014 25 16 4.0037 -1.8225 7.7128 26 6 3.5053 -1.5685 6.0454 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.7516 -1.7714 -1.2057 31 1 1.6053 -0.2616 -2.1370 32 1 3.8532 0.4371 -1.3574 33 1 3.9994 -1.0727 -0.4261 34 1 3.7865 -2.3851 -2.5188 35 1 3.6401 -0.8757 -3.4507 36 1 5.8884 -0.1772 -2.6708 37 1 6.0340 -1.6868 -1.7390 38 1 5.4606 -2.3493 -4.4242 39 1 7.3650 -3.6531 -6.8327 40 1 2.2490 -1.6318 1.1524 41 1 1.9778 -1.5511 3.8324 42 1 3.6493 -1.1205 3.3977 43 1 2.9692 1.5416 7.0165 44 1 3.8071 0.3128 9.0727 45 1 3.5004 -2.3253 5.2750 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176175878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:12 Heat of formation + Delta-G solvation = -65.478546 kcal Electronic energy + Delta-G solvation = -24061.518502 eV Core-core repulsion = 20398.174276 eV Total energy + Delta-G solvation = -3663.344226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37127 -40.31897 -38.08091 -37.00086 -36.68556 -34.80478 -33.13997 -31.90552 -30.06716 -29.38192 -28.81316 -25.95079 -24.72982 -23.70079 -22.18679 -21.97682 -21.57731 -20.72540 -19.32098 -19.12924 -18.14710 -17.86651 -17.44110 -17.10187 -16.68928 -16.24288 -15.72190 -15.48207 -15.30008 -15.24565 -15.01548 -14.59096 -14.33667 -14.23273 -14.09030 -13.67673 -13.65811 -13.25435 -13.04821 -12.88343 -12.87056 -12.81893 -12.46279 -12.28025 -12.16669 -11.98319 -11.89016 -11.84042 -11.82056 -11.48949 -11.40592 -10.95738 -10.94525 -10.14885 -9.80675 -9.02133 -8.97793 -7.97394 -5.26596 0.01142 0.67162 1.00656 1.46155 1.47791 1.48133 1.56806 1.61844 1.71751 2.54607 2.70183 3.35841 3.54003 3.66308 3.94922 4.00852 4.05023 4.05736 4.10381 4.14287 4.34485 4.35391 4.41274 4.44390 4.60300 4.64794 4.77322 4.87541 4.91932 4.92374 4.95130 4.98945 5.02243 5.10843 5.21952 5.27034 5.31745 5.42583 5.45427 5.53061 5.55520 6.16102 6.25644 6.49849 7.16159 7.31305 8.08147 8.31433 9.26098 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.001949 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.708301 B =14363.373829 C =16404.956029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.271 1.271 17 N -0.704 5.704 18 C 0.514 3.486 19 O -0.571 6.571 20 C 0.042 3.958 21 O -0.310 6.310 22 C 0.094 3.906 23 C -0.168 4.168 24 C -0.178 4.178 25 S 0.139 5.861 26 C -0.331 4.331 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.011 0.989 37 H 0.019 0.981 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.418 0.582 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.151 0.849 44 H 0.200 0.800 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 1.989 28.369 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.196 1.196 17 N -0.359 5.359 18 C 0.300 3.700 19 O -0.450 6.450 20 C -0.036 4.036 21 O -0.224 6.224 22 C 0.038 3.962 23 C -0.199 4.199 24 C -0.313 4.313 25 S 0.399 5.601 26 C -0.467 4.467 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.206 0.794 39 H 0.061 0.939 40 H 0.255 0.745 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.169 0.831 44 H 0.217 0.783 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.887 1.839 29.190 32.377 hybrid contribution 0.449 0.533 -1.705 1.842 sum -13.438 2.372 27.485 30.686 Atomic orbital electron populations 1.22123 0.94247 1.03056 1.02196 1.20990 0.94520 0.96715 0.83700 0.91549 1.21843 0.94655 1.02159 0.96669 1.21438 0.95852 1.00110 0.97029 1.21599 0.93635 1.01035 0.98745 1.20868 0.94356 0.94198 0.88494 1.42629 1.04508 1.65388 1.26649 1.19649 0.85357 1.27737 1.05442 0.90917 1.25616 1.02287 1.01231 0.97817 1.69814 1.34666 1.41836 1.15611 0.85107 0.79806 0.78026 0.76628 1.21109 1.21966 1.19600 1.45855 1.66660 1.14867 1.08489 1.20459 0.77481 0.86914 0.85122 1.90732 1.50973 1.17870 1.85433 1.22623 1.04789 0.92222 0.83986 1.86144 1.81891 1.38054 1.16313 1.18144 0.99155 0.92334 0.86544 1.19680 1.07044 1.02473 0.90718 1.25894 1.04770 0.97370 1.03308 1.84181 1.65213 1.08722 1.01976 1.25666 1.17289 1.00127 1.03588 0.90504 0.90774 0.94018 0.89361 0.89514 0.92815 0.91317 0.91663 0.92503 0.97095 0.96310 0.79390 0.93897 0.74470 0.86116 0.86766 0.83117 0.78342 0.79780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.48 2.57 44.99 0.12 2.60 16 3 H 0.07 1.50 7.58 -2.38 -0.02 1.48 16 4 C -0.12 -1.84 4.75 30.59 0.15 -1.69 16 5 C -0.11 -2.31 5.10 30.59 0.16 -2.16 16 6 C -0.11 -3.32 5.33 30.59 0.16 -3.16 16 7 C 0.15 5.91 6.26 86.38 0.54 6.45 16 8 N -0.75 -38.94 5.60 -343.46 -1.92 -40.87 16 9 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 10 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 11 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 12 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 13 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 N -0.70 -10.54 4.53 -442.53 -2.00 -12.54 16 18 C 0.51 10.63 7.87 87.66 0.69 11.32 16 19 O -0.57 -17.83 16.16 16.01 0.26 -17.57 16 20 C 0.04 0.63 5.35 71.24 0.38 1.01 16 21 O -0.31 -6.94 9.74 -77.19 -0.75 -7.69 16 22 C 0.09 1.76 6.64 21.33 0.14 1.90 16 23 C -0.17 -2.75 10.17 21.28 0.22 -2.54 16 24 C -0.18 -2.07 11.22 66.73 0.75 -1.32 16 25 S 0.14 1.63 23.34 -56.49 -1.32 0.31 16 26 C -0.33 -4.72 10.09 66.77 0.67 -4.05 16 27 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16 34 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.37 20.42 7.67 -92.71 -0.71 19.71 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.42 3.60 8.60 -92.71 -0.80 2.80 16 41 H 0.12 1.04 7.86 -2.39 -0.02 1.02 16 42 H 0.11 1.20 7.86 -2.39 -0.02 1.18 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.18 1.76 7.02 -2.91 -0.02 1.74 16 Total: -1.00 -77.43 391.65 2.01 -75.42 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.52 Total: 24.68 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.96 Total: -10.87 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -3.65 Total: -112.78 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.49 Total: -25.26 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -77.43 2.01 -75.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176175878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.941 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds