Wall clock time and date at job start Tue Mar 31 2020 15:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35782 * 117.00130 * 2 1 4 4 C 1.38022 * 123.47048 * 359.70669 * 3 2 1 5 5 C 1.33612 * 115.08250 * 179.76783 * 4 3 2 6 6 S 1.70577 * 111.14702 * 0.48787 * 5 4 3 7 7 C 1.37266 * 123.46934 * 180.02562 * 3 2 1 8 8 C 1.41721 * 125.47738 * 359.97392 * 7 3 2 9 9 O 1.21777 * 119.99873 * 0.02562 * 8 7 3 10 10 N 1.34783 * 120.00111 * 180.02562 * 8 7 3 11 11 C 1.46500 * 119.99833 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.47017 * 324.99798 * 11 10 8 13 13 C 1.52997 * 109.46965 * 85.00218 * 11 10 8 14 14 C 1.53004 * 109.46835 * 205.00109 * 11 10 8 15 15 C 1.52992 * 109.47284 * 64.99959 * 14 11 10 16 16 C 1.52995 * 109.47458 * 180.02562 * 15 14 11 17 17 C 1.53004 * 109.47465 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47107 * 179.97438 * 17 16 15 19 19 C 1.36930 * 119.99866 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00239 * 359.97438 * 19 18 17 21 21 C 1.38819 * 120.00048 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99886 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99905 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47323 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46993 * 119.99979 * 23 21 19 26 26 H 1.48504 * 109.46714 * 239.99838 * 23 21 19 27 27 H 1.09001 * 109.47103 * 300.00464 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99968 * 1 2 3 29 29 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.07995 * 122.45648 * 359.97438 * 4 3 2 31 31 H 1.08001 * 124.42513 * 180.23478 * 5 4 3 32 32 H 0.96997 * 119.99950 * 0.02562 * 10 8 7 33 33 H 1.08995 * 109.47658 * 60.00123 * 13 11 10 34 34 H 1.09006 * 109.47080 * 180.02562 * 13 11 10 35 35 H 1.09004 * 109.47188 * 299.99239 * 13 11 10 36 36 H 1.08994 * 109.46573 * 185.00466 * 14 11 10 37 37 H 1.09003 * 109.46905 * 305.00167 * 14 11 10 38 38 H 1.09001 * 109.47686 * 300.00194 * 15 14 11 39 39 H 1.09006 * 109.47010 * 59.99724 * 15 14 11 40 40 H 1.09003 * 109.46957 * 299.99918 * 16 15 14 41 41 H 1.08997 * 109.47441 * 59.99709 * 16 15 14 42 42 H 1.09003 * 109.46737 * 299.99772 * 17 16 15 43 43 H 1.08994 * 109.47227 * 59.99846 * 17 16 15 44 44 H 0.97003 * 119.99697 * 359.97438 * 18 17 16 45 45 H 0.96998 * 120.00205 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 -0.0059 5 6 2.1390 3.5000 0.0000 6 16 3.7924 3.0804 0.0000 7 6 3.4094 1.3644 -0.0005 8 6 4.3567 0.3103 -0.0006 9 8 3.9793 -0.8474 -0.0006 10 7 5.6754 0.5893 -0.0006 11 6 6.6546 -0.5004 -0.0012 12 1 6.2713 -1.3336 0.5879 13 6 6.9018 -0.9630 -1.4385 14 6 7.9679 -0.0062 0.6086 15 6 7.7477 0.3393 2.0826 16 6 9.0608 0.8341 2.6922 17 6 8.8407 1.1789 4.1666 18 7 10.0983 1.6522 4.7504 19 6 10.1450 2.0219 6.0680 20 1 9.2547 1.9650 6.6768 21 6 11.3365 2.4708 6.6211 22 7 12.4211 2.5416 5.8789 23 14 11.4004 2.9745 8.4188 24 1 10.0573 2.8037 9.0287 25 1 12.3826 2.1230 9.1368 26 1 11.8120 4.3977 8.5196 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2868 2.4659 -0.0113 31 1 1.7664 4.5137 0.0003 32 1 5.9760 1.5115 -0.0002 33 1 7.2850 -0.1299 -2.0276 34 1 7.6300 -1.7741 -1.4389 35 1 5.9661 -1.3152 -1.8729 36 1 8.7230 -0.7880 0.5274 37 1 8.3053 0.8818 0.0738 38 1 6.9926 1.1211 2.1638 39 1 7.4102 -0.5486 2.6174 40 1 9.8163 0.0525 2.6112 41 1 9.3979 1.7220 2.1574 42 1 8.0852 1.9604 4.2480 43 1 8.5040 0.2908 4.7011 44 1 10.8978 1.7036 4.2035 45 1 13.2538 2.8549 6.2654 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176277331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:10 Heat of formation + Delta-G solvation = -44.685766 kcal Electronic energy + Delta-G solvation = -24675.989704 eV Core-core repulsion = 21013.547121 eV Total energy + Delta-G solvation = -3662.442583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59692 -39.43558 -36.87930 -36.26327 -35.16279 -33.20201 -31.82649 -30.56377 -29.83845 -27.38933 -27.34573 -25.21233 -24.15197 -22.56035 -21.63529 -20.72681 -20.57595 -19.93217 -18.99713 -17.29203 -16.95775 -16.48655 -16.25641 -15.92838 -15.21636 -15.04678 -14.84489 -14.61342 -14.24874 -13.87583 -13.80869 -13.52777 -13.19122 -13.13016 -12.97881 -12.82241 -12.72954 -12.24846 -11.94896 -11.70053 -11.48936 -11.39693 -11.36108 -11.19793 -10.94047 -10.79009 -10.64223 -10.35611 -10.24259 -9.98162 -9.92228 -9.63062 -9.28798 -9.02796 -8.82695 -8.43769 -6.86298 -5.72220 -3.00226 0.15152 1.07636 1.40075 1.98560 3.09960 3.16008 3.20567 3.45997 3.51409 3.53954 4.24329 4.55814 4.63385 4.70812 4.71003 4.77697 4.95545 5.02465 5.07258 5.10830 5.19577 5.34655 5.37884 5.49458 5.53692 5.59515 5.67905 5.70671 5.77855 5.85963 6.00552 6.03863 6.19195 6.30995 6.37171 6.43889 6.50183 6.53432 6.88218 6.95543 6.99384 7.43406 7.74848 8.19548 8.47338 9.58024 10.17804 10.52496 11.51057 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.002278 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.748189 B =12289.620304 C =13289.920797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.271 6.271 3 C 0.188 3.812 4 C -0.215 4.215 5 C -0.196 4.196 6 S 0.232 5.768 7 C -0.327 4.327 8 C 0.596 3.404 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.143 3.857 12 H 0.090 0.910 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.394 0.606 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.086 -0.446 -19.537 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.182 6.182 3 C 0.127 3.873 4 C -0.249 4.249 5 C -0.334 4.334 6 S 0.498 5.502 7 C -0.447 4.447 8 C 0.384 3.616 9 O -0.403 6.403 10 N -0.377 5.377 11 C 0.039 3.961 12 H 0.108 0.892 13 C -0.221 4.221 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.192 0.808 32 H 0.229 0.771 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.216 0.784 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.979 -0.642 -19.357 30.052 hybrid contribution -1.227 0.327 0.867 1.538 sum -24.206 -0.315 -18.490 30.462 Atomic orbital electron populations 1.23198 0.78316 1.04499 1.01305 1.86340 1.20893 1.24078 1.86914 1.18294 0.90276 0.85474 0.93213 1.20061 1.02165 0.90938 1.11744 1.25073 0.99206 1.03862 1.05253 1.83153 1.03431 0.95412 1.68236 1.22782 0.95421 0.98438 1.28082 1.15511 0.81638 0.87689 0.76742 1.90868 1.79541 1.20092 1.49813 1.45994 1.05452 1.09910 1.76357 1.21023 0.88321 0.90013 0.96721 0.89203 1.22177 1.02123 1.01389 0.96406 1.21942 0.95911 1.02068 0.96570 1.21523 0.98200 1.01311 0.94245 1.21725 0.96645 1.00906 0.97034 1.20654 0.90016 0.96096 0.90783 1.42404 1.07107 1.78655 1.09743 1.19307 0.95166 1.35269 0.86997 0.91189 1.24753 0.95801 1.02588 0.98168 1.69673 1.00023 1.53636 1.35080 0.86108 0.77279 0.77847 0.84951 1.20570 1.21877 1.21894 0.92488 0.92583 0.87800 0.83215 0.80759 0.77141 0.92551 0.91530 0.92237 0.90143 0.91391 0.92154 0.91932 0.92059 0.92130 0.96592 0.96562 0.78354 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.94 101.05 1.00 1.15 16 2 O -0.27 -3.18 9.36 -36.58 -0.34 -3.52 16 3 C 0.19 2.06 6.70 -40.01 -0.27 1.79 16 4 C -0.22 -1.64 9.17 -41.28 -0.38 -2.02 16 5 C -0.20 -1.27 10.90 29.11 0.32 -0.95 16 6 S 0.23 1.80 22.00 -107.50 -2.37 -0.56 16 7 C -0.33 -3.77 6.28 -38.61 -0.24 -4.01 16 8 C 0.60 8.09 7.56 -14.93 -0.11 7.98 16 9 O -0.52 -8.97 15.50 -12.40 -0.19 -9.16 16 10 N -0.72 -8.09 4.52 -56.66 -0.26 -8.35 16 11 C 0.14 1.58 2.57 -67.93 -0.17 1.41 16 12 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 13 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 14 C -0.13 -1.35 4.75 -26.73 -0.13 -1.48 16 15 C -0.11 -1.51 5.10 -26.74 -0.14 -1.64 16 16 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 17 C 0.15 3.20 6.26 -4.04 -0.03 3.18 16 18 N -0.74 -19.47 5.60 -59.91 -0.34 -19.81 16 19 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 22 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H 0.06 0.29 7.89 -51.93 -0.41 -0.12 16 28 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.15 0.75 6.99 -52.49 -0.37 0.39 16 31 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.39 3.68 7.57 -40.82 -0.31 3.37 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -36.10 387.55 -9.35 -45.46 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.22 Total: 6.13 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.18 Total: -5.67 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.13 Total: -56.37 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.53 Total: -12.69 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.37 Total: -0.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.10 -9.35 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176277331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.770 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds