Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 108.68206 * 2 1 4 4 C 1.45828 * 108.71894 * 118.18277 * 2 1 3 5 5 S 1.82217 * 112.65123 * 185.97911 * 4 2 1 6 6 C 1.79950 * 103.24054 * 286.04734 * 5 4 2 7 7 C 1.53823 * 111.09821 * 84.02688 * 6 5 4 8 8 N 1.46366 * 114.96994 * 316.86088 * 7 6 5 9 9 C 1.34776 * 119.69689 * 137.51203 * 8 7 6 10 10 O 1.21344 * 120.00284 * 175.78140 * 9 8 7 11 11 C 1.49458 * 119.99711 * 355.78164 * 9 8 7 12 12 O 1.21351 * 119.99538 * 84.36482 * 11 9 8 13 13 N 1.34774 * 120.00026 * 264.36530 * 11 9 8 14 14 C 1.46498 * 120.00301 * 184.68466 * 13 11 9 15 15 C 1.52993 * 109.47337 * 175.40425 * 14 13 11 16 16 C 1.50699 * 115.55435 * 39.83808 * 15 14 13 17 17 H 1.07997 * 119.99907 * 269.50298 * 16 15 14 18 18 C 1.37876 * 120.00123 * 89.48814 * 16 15 14 19 19 N 1.31515 * 120.00300 * 180.70416 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.70580 * 18 16 15 21 21 H 1.48498 * 109.46967 * 92.48430 * 20 18 16 22 22 H 1.48497 * 109.47057 * 212.48973 * 20 18 16 23 23 H 1.48502 * 109.46901 * 332.48713 * 20 18 16 24 24 C 1.53001 * 117.49815 * 254.12736 * 15 14 13 25 25 C 1.53001 * 60.00177 * 252.51220 * 24 15 14 26 26 C 1.44678 * 120.57360 * 317.58555 * 8 7 6 27 27 H 1.09007 * 109.46902 * 301.82277 * 1 2 3 28 28 H 1.08996 * 109.47129 * 61.81732 * 1 2 3 29 29 H 1.09000 * 109.47485 * 181.82119 * 1 2 3 30 30 H 1.08998 * 108.84648 * 65.15800 * 4 2 1 31 31 H 1.09004 * 108.76033 * 306.74085 * 4 2 1 32 32 H 1.09002 * 109.14139 * 204.42579 * 6 5 4 33 33 H 1.09004 * 109.14198 * 323.62154 * 6 5 4 34 34 H 1.08993 * 108.38682 * 78.34097 * 7 6 5 35 35 H 1.08997 * 108.38457 * 195.50742 * 7 6 5 36 36 H 0.97002 * 119.99503 * 4.67785 * 13 11 9 37 37 H 1.09006 * 109.46369 * 295.40285 * 14 13 11 38 38 H 1.08997 * 109.47247 * 55.39463 * 14 13 11 39 39 H 0.96996 * 120.00303 * 180.02562 * 19 18 16 40 40 H 1.08995 * 117.49733 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49814 * 145.01984 * 24 15 14 42 42 H 1.09004 * 117.49606 * 252.51176 * 25 24 15 43 43 H 1.08998 * 117.49480 * 107.48962 * 25 24 15 44 44 H 1.08995 * 109.48172 * 338.45807 * 26 8 7 45 45 H 1.09003 * 109.47869 * 218.43545 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8792 1.0325 0.0000 4 6 1.9981 -0.6523 1.2174 5 16 3.8073 -0.5583 1.4129 6 6 4.4148 -1.7411 0.2004 7 6 4.5137 -1.1020 -1.1953 8 7 3.3749 -0.2638 -1.5731 9 6 3.5892 0.9143 -2.1917 10 8 2.6486 1.5778 -2.5760 11 6 4.9853 1.4036 -2.4044 12 8 5.6199 1.0270 -3.3678 13 7 5.5394 2.2628 -1.5263 14 6 6.8679 2.8222 -1.7876 15 6 7.2117 3.8471 -0.7050 16 6 6.7966 3.4773 0.6956 17 1 5.8254 3.7703 1.0661 18 6 7.6565 2.7645 1.5040 19 7 7.2889 2.4297 2.7215 20 14 9.3439 2.2743 0.8699 21 1 10.3349 3.3147 1.2448 22 1 9.7396 0.9746 1.4694 23 1 9.2983 2.1439 -0.6087 24 6 7.1584 5.3268 -1.0906 25 6 8.5087 4.6417 -0.8708 26 6 2.0217 -0.6882 -1.2869 27 1 -0.3633 0.5419 0.8733 28 1 -0.3633 0.4853 -0.9058 29 1 -0.3634 -1.0271 0.0327 30 1 1.7006 -1.7006 1.1918 31 1 1.5258 -0.1736 2.0753 32 1 5.4017 -2.0898 0.5047 33 1 3.7333 -2.5907 0.1572 34 1 5.4168 -0.4929 -1.2313 35 1 4.6120 -1.8991 -1.9322 36 1 5.0584 2.5110 -0.7213 37 1 7.6075 2.0215 -1.7780 38 1 6.8719 3.3087 -2.7630 39 1 7.8939 1.9286 3.2904 40 1 6.8781 5.5700 -2.1154 41 1 6.8228 6.0330 -0.3311 42 1 9.0615 4.8972 0.0333 43 1 9.1170 4.4342 -1.7512 44 1 2.0009 -1.7695 -1.1515 45 1 1.3713 -0.4132 -2.1172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324391024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = -40.134175 kcal Electronic energy + Delta-G solvation = -27207.951253 eV Core-core repulsion = 23545.706041 eV Total energy + Delta-G solvation = -3662.245212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66747 -38.67403 -37.19865 -36.85870 -35.09540 -33.59108 -32.16705 -30.99855 -28.08311 -27.45464 -26.56296 -25.41785 -23.80825 -22.47238 -21.73240 -20.77107 -19.59578 -18.90206 -17.80124 -16.94510 -16.56272 -16.38743 -16.03753 -15.49433 -15.15505 -14.98537 -14.63185 -14.39873 -14.11267 -13.80601 -13.66284 -13.26263 -13.12275 -12.87291 -12.84030 -12.72676 -12.42439 -12.32353 -12.00910 -11.85633 -11.42832 -11.32552 -11.20187 -11.05359 -10.89006 -10.81591 -10.50577 -10.23606 -9.65637 -9.58159 -9.31832 -9.15399 -8.82487 -8.76924 -8.60004 -8.34135 -7.52259 -6.17719 -4.23898 1.74561 2.28675 2.46594 2.62962 2.99025 3.24123 3.35005 3.39401 3.73356 4.36070 4.40745 4.52807 4.62711 4.74341 4.83521 4.93591 5.01176 5.14091 5.18422 5.24840 5.35793 5.39837 5.47341 5.54140 5.59287 5.62615 5.65894 5.88909 5.94805 5.99628 6.05068 6.09784 6.20354 6.40787 6.43099 6.43847 6.67253 6.79487 6.99482 7.05901 7.06903 7.64155 7.90029 7.95975 8.36676 8.48020 8.82046 9.44410 10.92164 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.005115 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.636224 B = 5472.765129 C = 6336.608137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.085 4.085 5 S -0.200 6.200 6 C -0.113 4.113 7 C 0.106 3.894 8 N -0.586 5.586 9 C 0.525 3.475 10 O -0.512 6.512 11 C 0.505 3.495 12 O -0.539 6.539 13 N -0.669 5.669 14 C 0.151 3.849 15 C -0.016 4.016 16 C -0.497 4.497 17 H 0.081 0.919 18 C 0.088 3.912 19 N -0.882 5.882 20 Si 0.875 3.125 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.257 1.257 24 C -0.178 4.178 25 C -0.194 4.194 26 C 0.117 3.883 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -9.269 -3.924 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.107 0.893 4 C -0.233 4.233 5 S 0.030 5.970 6 C -0.262 4.262 7 C -0.019 4.019 8 N -0.320 5.320 9 C 0.308 3.692 10 O -0.386 6.386 11 C 0.285 3.715 12 O -0.418 6.418 13 N -0.321 5.321 14 C 0.028 3.972 15 C -0.017 4.017 16 C -0.534 4.534 17 H 0.099 0.901 18 C -0.117 4.117 19 N -0.518 5.518 20 Si 0.704 3.296 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.181 1.181 24 C -0.215 4.215 25 C -0.231 4.231 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.257 0.743 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.726 -8.631 -3.896 12.877 hybrid contribution 0.233 -1.014 -0.547 1.175 sum -8.494 -9.645 -4.443 13.598 Atomic orbital electron populations 1.21859 0.93798 1.01777 1.02650 1.20653 0.96707 1.02261 0.93854 0.89325 1.22334 0.95705 1.03737 1.01558 1.87799 1.03756 1.57005 1.48479 1.23772 1.06305 1.00098 0.96049 1.21783 0.89194 0.95653 0.95314 1.47336 1.07107 1.20085 1.57466 1.20512 0.90295 0.80993 0.77433 1.90757 1.43038 1.55725 1.49091 1.19948 0.86236 0.81059 0.84301 1.90760 1.61465 1.58931 1.30595 1.46035 1.19391 1.43306 1.23408 1.21165 0.82416 0.96584 0.97039 1.19597 0.97544 0.88701 0.95907 1.20104 1.03872 1.36270 0.93123 0.90150 1.24930 0.97968 0.94395 0.94367 1.69887 1.36517 1.37763 1.07601 0.86937 0.84896 0.77521 0.80288 1.20572 1.22225 1.18130 1.22930 1.00736 0.97775 1.00102 1.22930 0.91239 1.07369 1.01595 1.21496 0.82823 0.98772 0.97572 0.92131 0.91881 0.92669 0.90487 0.87577 0.86176 0.89683 0.89134 0.90681 0.74265 0.91815 0.92843 0.92505 0.90819 0.89344 0.89201 0.90714 0.90355 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.94 37.16 0.33 -0.90 16 2 C -0.11 -1.26 2.36 -93.49 -0.22 -1.48 16 3 H 0.09 1.27 7.82 -51.93 -0.41 0.86 16 4 C -0.09 -0.92 5.00 33.76 0.17 -0.75 16 5 S -0.20 -2.92 21.62 -107.50 -2.32 -5.24 16 6 C -0.11 -1.28 5.90 37.59 0.22 -1.06 16 7 C 0.11 1.36 5.92 -3.69 -0.02 1.33 16 8 N -0.59 -8.18 2.41 -174.60 -0.42 -8.60 16 9 C 0.52 9.19 7.17 -11.58 -0.08 9.10 16 10 O -0.51 -9.89 16.74 5.50 0.09 -9.80 16 11 C 0.50 9.78 5.50 -11.58 -0.06 9.71 16 12 O -0.54 -11.52 17.11 5.50 0.09 -11.42 16 13 N -0.67 -13.26 5.38 -60.73 -0.33 -13.59 16 14 C 0.15 3.11 5.63 -4.05 -0.02 3.08 16 15 C -0.02 -0.35 1.19 -155.66 -0.18 -0.54 16 16 C -0.50 -12.47 8.00 -34.44 -0.28 -12.74 16 17 H 0.08 2.21 8.05 -52.49 -0.42 1.78 16 18 C 0.09 2.31 5.47 -17.82 -0.10 2.22 16 19 N -0.88 -24.78 13.96 55.43 0.77 -24.00 16 20 Si 0.88 20.51 24.93 -169.99 -4.24 16.27 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.26 -5.75 5.47 56.52 0.31 -5.44 16 24 C -0.18 -3.45 9.88 -26.73 -0.26 -3.71 16 25 C -0.19 -3.90 7.35 -26.73 -0.20 -4.10 16 26 C 0.12 1.31 4.64 -4.50 -0.02 1.29 16 27 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.67 8.11 -51.92 -0.42 0.25 16 31 H 0.11 1.11 8.04 -51.92 -0.42 0.69 16 32 H 0.12 1.31 8.14 -51.80 -0.42 0.89 16 33 H 0.08 0.74 7.90 -51.80 -0.41 0.33 16 34 H 0.09 1.39 6.23 -51.93 -0.32 1.07 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.42 8.49 7.34 -40.82 -0.30 8.19 16 37 H 0.06 1.37 6.80 -51.93 -0.35 1.01 16 38 H 0.05 1.05 7.95 -51.93 -0.41 0.64 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.09 1.90 6.88 -51.93 -0.36 1.54 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 0.68 7.52 -51.93 -0.39 0.29 16 45 H 0.09 1.04 7.30 -51.93 -0.38 0.67 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -30.14 367.94 -8.72 -38.86 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.19 Total: 10.51 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.73 Total: 1.46 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.03 Total: -46.19 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.19 Total: -21.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.24 Total: 16.27 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.32 Total: -5.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.14 -8.72 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324391024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.275 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds