Wall clock time and date at job start Tue Mar 31 2020 14:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 108.68206 * 2 1 4 4 C 1.45828 * 108.71894 * 118.18277 * 2 1 3 5 5 S 1.82217 * 112.65123 * 185.97911 * 4 2 1 6 6 C 1.79950 * 103.24054 * 286.04734 * 5 4 2 7 7 C 1.53823 * 111.09821 * 84.02688 * 6 5 4 8 8 N 1.46366 * 114.96994 * 316.86088 * 7 6 5 9 9 C 1.34776 * 119.69689 * 137.51203 * 8 7 6 10 10 O 1.21344 * 120.00284 * 175.78140 * 9 8 7 11 11 C 1.49458 * 119.99711 * 355.78164 * 9 8 7 12 12 O 1.21351 * 119.99538 * 84.36482 * 11 9 8 13 13 N 1.34774 * 120.00026 * 264.36530 * 11 9 8 14 14 C 1.46498 * 120.00301 * 184.68466 * 13 11 9 15 15 C 1.52993 * 109.47337 * 175.40425 * 14 13 11 16 16 C 1.50699 * 115.55435 * 39.83808 * 15 14 13 17 17 H 1.07997 * 119.99907 * 269.50298 * 16 15 14 18 18 C 1.37876 * 120.00123 * 89.48814 * 16 15 14 19 19 N 1.31515 * 120.00300 * 180.70416 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.70580 * 18 16 15 21 21 H 1.48498 * 109.46967 * 92.48430 * 20 18 16 22 22 H 1.48497 * 109.47057 * 212.48973 * 20 18 16 23 23 H 1.48502 * 109.46901 * 332.48713 * 20 18 16 24 24 C 1.53001 * 117.49815 * 254.12736 * 15 14 13 25 25 C 1.53001 * 60.00177 * 252.51220 * 24 15 14 26 26 C 1.44678 * 120.57360 * 317.58555 * 8 7 6 27 27 H 1.09007 * 109.46902 * 301.82277 * 1 2 3 28 28 H 1.08996 * 109.47129 * 61.81732 * 1 2 3 29 29 H 1.09000 * 109.47485 * 181.82119 * 1 2 3 30 30 H 1.08998 * 108.84648 * 65.15800 * 4 2 1 31 31 H 1.09004 * 108.76033 * 306.74085 * 4 2 1 32 32 H 1.09002 * 109.14139 * 204.42579 * 6 5 4 33 33 H 1.09004 * 109.14198 * 323.62154 * 6 5 4 34 34 H 1.08993 * 108.38682 * 78.34097 * 7 6 5 35 35 H 1.08997 * 108.38457 * 195.50742 * 7 6 5 36 36 H 0.97002 * 119.99503 * 4.67785 * 13 11 9 37 37 H 1.09006 * 109.46369 * 295.40285 * 14 13 11 38 38 H 1.08997 * 109.47247 * 55.39463 * 14 13 11 39 39 H 0.96996 * 120.00303 * 180.02562 * 19 18 16 40 40 H 1.08995 * 117.49733 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49814 * 145.01984 * 24 15 14 42 42 H 1.09004 * 117.49606 * 252.51176 * 25 24 15 43 43 H 1.08998 * 117.49480 * 107.48962 * 25 24 15 44 44 H 1.08995 * 109.48172 * 338.45807 * 26 8 7 45 45 H 1.09003 * 109.47869 * 218.43545 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8792 1.0325 0.0000 4 6 1.9981 -0.6523 1.2174 5 16 3.8073 -0.5583 1.4129 6 6 4.4148 -1.7411 0.2004 7 6 4.5137 -1.1020 -1.1953 8 7 3.3749 -0.2638 -1.5731 9 6 3.5892 0.9143 -2.1917 10 8 2.6486 1.5778 -2.5760 11 6 4.9853 1.4036 -2.4044 12 8 5.6199 1.0270 -3.3678 13 7 5.5394 2.2628 -1.5263 14 6 6.8679 2.8222 -1.7876 15 6 7.2117 3.8471 -0.7050 16 6 6.7966 3.4773 0.6956 17 1 5.8254 3.7703 1.0661 18 6 7.6565 2.7645 1.5040 19 7 7.2889 2.4297 2.7215 20 14 9.3439 2.2743 0.8699 21 1 10.3349 3.3147 1.2448 22 1 9.7396 0.9746 1.4694 23 1 9.2983 2.1439 -0.6087 24 6 7.1584 5.3268 -1.0906 25 6 8.5087 4.6417 -0.8708 26 6 2.0217 -0.6882 -1.2869 27 1 -0.3633 0.5419 0.8733 28 1 -0.3633 0.4853 -0.9058 29 1 -0.3634 -1.0271 0.0327 30 1 1.7006 -1.7006 1.1918 31 1 1.5258 -0.1736 2.0753 32 1 5.4017 -2.0898 0.5047 33 1 3.7333 -2.5907 0.1572 34 1 5.4168 -0.4929 -1.2313 35 1 4.6120 -1.8991 -1.9322 36 1 5.0584 2.5110 -0.7213 37 1 7.6075 2.0215 -1.7780 38 1 6.8719 3.3087 -2.7630 39 1 7.8939 1.9286 3.2904 40 1 6.8781 5.5700 -2.1154 41 1 6.8228 6.0330 -0.3311 42 1 9.0615 4.8972 0.0333 43 1 9.1170 4.4342 -1.7512 44 1 2.0009 -1.7695 -1.1515 45 1 1.3713 -0.4132 -2.1172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324391024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:50 Heat of formation + Delta-G solvation = -59.915801 kcal Electronic energy + Delta-G solvation = -27208.809048 eV Core-core repulsion = 23545.706041 eV Total energy + Delta-G solvation = -3663.103007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02365 -40.11722 -38.74287 -38.17886 -36.11239 -35.20954 -34.18821 -32.02955 -29.44233 -28.26836 -28.01355 -27.19481 -25.02554 -23.71543 -23.32919 -21.79685 -21.26761 -20.33772 -19.16640 -18.33212 -18.17172 -17.67782 -17.25508 -17.02469 -16.73276 -16.26946 -15.86329 -15.73497 -15.61596 -14.98173 -14.77277 -14.73022 -14.56160 -14.36690 -14.20975 -14.00494 -13.84449 -13.51944 -13.07655 -12.87014 -12.77349 -12.72641 -12.64732 -12.34920 -12.15301 -12.07478 -11.99517 -11.76716 -11.50285 -11.03142 -10.77595 -10.65781 -10.55120 -10.38542 -10.00204 -9.94344 -8.67557 -8.22917 -6.31136 0.76711 0.90611 1.05845 1.36148 1.42348 1.51776 1.57177 1.69094 2.38751 2.40162 3.09045 3.13940 3.41571 3.45924 3.63880 3.79106 3.92339 3.99579 4.14703 4.31960 4.33600 4.39214 4.42251 4.44690 4.50888 4.54672 4.58387 4.63193 4.75856 4.76682 4.80823 4.86146 5.04580 5.06649 5.15801 5.17839 5.27218 5.34957 5.43533 5.47801 5.71957 5.84709 6.32055 6.34142 6.60680 6.76181 6.85622 7.39440 8.89986 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.005115 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.636224 B = 5472.765129 C = 6336.608137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 H 0.047 0.953 4 C -0.061 4.061 5 S -0.304 6.304 6 C -0.088 4.088 7 C 0.102 3.898 8 N -0.573 5.573 9 C 0.523 3.477 10 O -0.538 6.538 11 C 0.507 3.493 12 O -0.560 6.560 13 N -0.672 5.672 14 C 0.158 3.842 15 C -0.041 4.041 16 C -0.483 4.483 17 H 0.042 0.958 18 C 0.042 3.958 19 N -0.927 5.927 20 Si 0.924 3.076 21 H -0.274 1.274 22 H -0.303 1.303 23 H -0.238 1.238 24 C -0.162 4.162 25 C -0.187 4.187 26 C 0.111 3.889 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.414 0.586 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.263 0.737 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 -10.949 -5.536 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.065 0.935 4 C -0.209 4.209 5 S -0.075 6.075 6 C -0.237 4.237 7 C -0.023 4.023 8 N -0.305 5.305 9 C 0.305 3.695 10 O -0.415 6.415 11 C 0.288 3.712 12 O -0.439 6.439 13 N -0.323 5.323 14 C 0.034 3.966 15 C -0.042 4.042 16 C -0.521 4.521 17 H 0.060 0.940 18 C -0.158 4.158 19 N -0.565 5.565 20 Si 0.751 3.249 21 H -0.200 1.200 22 H -0.230 1.230 23 H -0.161 1.161 24 C -0.199 4.199 25 C -0.225 4.225 26 C -0.010 4.010 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.182 -10.324 -5.511 14.875 hybrid contribution 0.282 -0.469 -0.018 0.547 sum -8.900 -10.793 -5.529 15.042 Atomic orbital electron populations 1.21808 0.91481 1.03578 1.02510 1.20577 0.98448 0.99896 0.94079 0.93477 1.22303 0.91504 1.05767 1.01284 1.88206 1.08914 1.59418 1.50969 1.23743 1.07240 0.99456 0.93282 1.21943 0.87499 0.95688 0.97172 1.47375 1.08808 1.18707 1.55649 1.20188 0.88976 0.82098 0.78226 1.90740 1.43134 1.56765 1.50812 1.20285 0.86978 0.80364 0.83602 1.90730 1.62427 1.59488 1.31292 1.46037 1.19327 1.43559 1.23389 1.21072 0.82431 0.95943 0.97135 1.19502 0.99906 0.90545 0.94239 1.20122 1.02056 1.35033 0.94857 0.93981 1.25576 1.01183 0.94681 0.94388 1.70020 1.37804 1.39559 1.09111 0.86137 0.81137 0.76822 0.80819 1.19962 1.23047 1.16072 1.22965 0.99865 0.95645 1.01398 1.22985 0.91133 1.06116 1.02226 1.21799 0.80921 1.00958 0.97367 0.91955 0.92430 0.89845 0.87041 0.87568 0.85941 0.85814 0.92222 0.87491 0.74868 0.92737 0.91408 0.92797 0.88129 0.89914 0.90283 0.88054 0.86416 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.94 71.98 0.64 -1.38 16 2 C -0.11 -2.26 2.36 -12.65 -0.03 -2.29 16 3 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 4 C -0.06 -1.21 5.00 69.78 0.35 -0.86 16 5 S -0.30 -8.93 21.62 -56.49 -1.22 -10.15 16 6 C -0.09 -1.83 5.90 72.26 0.43 -1.40 16 7 C 0.10 2.44 5.92 86.68 0.51 2.95 16 8 N -0.57 -15.32 2.41 -824.68 -1.98 -17.31 16 9 C 0.52 18.36 7.17 87.27 0.63 18.99 16 10 O -0.54 -20.99 16.74 -3.23 -0.05 -21.05 16 11 C 0.51 19.78 5.50 87.27 0.48 20.26 16 12 O -0.56 -23.74 17.11 -3.25 -0.06 -23.80 16 13 N -0.67 -27.11 5.38 -464.42 -2.50 -29.60 16 14 C 0.16 6.36 5.63 86.38 0.49 6.85 16 15 C -0.04 -1.74 1.19 -52.93 -0.06 -1.80 16 16 C -0.48 -24.97 8.00 25.60 0.20 -24.76 16 17 H 0.04 2.45 8.05 -2.91 -0.02 2.42 16 18 C 0.04 2.26 5.47 84.65 0.46 2.72 16 19 N -0.93 -54.21 13.96 21.45 0.30 -53.91 16 20 Si 0.92 42.32 24.93 68.60 1.71 44.03 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.24 -10.03 5.47 99.48 0.54 -9.49 16 24 C -0.16 -5.97 9.88 30.60 0.30 -5.67 16 25 C -0.19 -7.13 7.35 30.60 0.22 -6.90 16 26 C 0.11 2.22 4.64 87.06 0.40 2.62 16 27 H 0.06 0.93 8.11 -2.38 -0.02 0.91 16 28 H 0.06 0.96 8.02 -2.39 -0.02 0.94 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 1.47 8.11 -2.39 -0.02 1.45 16 31 H 0.11 2.11 8.04 -2.39 -0.02 2.09 16 32 H 0.12 2.51 8.14 -2.47 -0.02 2.49 16 33 H 0.12 1.60 7.90 -2.47 -0.02 1.58 16 34 H 0.06 1.83 6.23 -2.39 -0.01 1.81 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 17.62 7.34 -92.71 -0.68 16.94 16 37 H 0.05 2.29 6.80 -2.38 -0.02 2.27 16 38 H 0.07 2.54 7.95 -2.39 -0.02 2.52 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.10 3.20 8.08 -2.39 -0.02 3.18 16 41 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.08 3.20 6.88 -2.38 -0.02 3.19 16 43 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.12 1.46 7.52 -2.39 -0.02 1.44 16 45 H 0.09 1.85 7.30 -2.39 -0.02 1.84 16 Total: -1.00 -68.74 367.94 1.38 -67.36 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.15 Total: 35.11 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.03 Total: 9.31 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.18 Total: -100.82 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.11 Total: -44.84 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.71 Total: 44.03 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.22 Total: -10.15 kcal Total: -68.74 1.38 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324391024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.448 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds