Wall clock time and date at job start Tue Mar 31 2020 15:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46681 * 2 1 4 4 C 1.50703 * 109.47331 * 240.00322 * 2 1 3 5 5 N 1.28014 * 120.00125 * 119.99839 * 4 2 1 6 6 N 1.40100 * 119.99922 * 179.97438 * 5 4 2 7 7 C 1.34768 * 120.00270 * 180.02562 * 6 5 4 8 8 O 1.21720 * 119.99798 * 4.15408 * 7 6 5 9 9 C 1.46659 * 120.00332 * 184.15835 * 7 6 5 10 10 C 1.36735 * 126.85447 * 359.52392 * 9 7 6 11 11 N 1.33317 * 107.83948 * 180.02562 * 10 9 7 12 12 C 1.30880 * 109.74115 * 359.97438 * 11 10 9 13 13 N 1.34756 * 109.13549 * 0.02562 * 12 11 10 14 14 C 1.40123 * 126.50492 * 179.73480 * 13 12 11 15 15 C 1.38844 * 120.07025 * 123.42332 * 14 13 12 16 16 C 1.38113 * 119.93362 * 179.72696 * 15 14 13 17 17 C 1.38283 * 120.06394 * 0.55187 * 16 15 14 18 18 C 1.38276 * 120.13890 * 359.72208 * 17 16 15 19 19 C 1.38118 * 120.06680 * 0.02562 * 18 17 16 20 20 C 1.52996 * 109.47204 * 119.99618 * 2 1 3 21 21 C 1.50699 * 109.47320 * 295.00350 * 20 2 1 22 22 H 1.07997 * 119.99953 * 0.02562 * 21 20 2 23 23 C 1.37881 * 119.99836 * 179.97438 * 21 20 2 24 24 N 1.31517 * 120.00000 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46873 * 60.00643 * 25 23 21 27 27 H 1.48505 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47620 * 300.00566 * 25 23 21 29 29 H 1.09003 * 109.47280 * 300.00427 * 1 2 3 30 30 H 1.09000 * 109.46803 * 59.99872 * 1 2 3 31 31 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99512 * 299.99621 * 4 2 1 33 33 H 0.97007 * 119.99521 * 359.97438 * 6 5 4 34 34 H 1.08001 * 126.08413 * 0.02562 * 10 9 7 35 35 H 1.07998 * 125.43297 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.03107 * 0.02562 * 15 14 13 37 37 H 1.07998 * 119.97296 * 180.30108 * 16 15 14 38 38 H 1.08000 * 119.93123 * 179.74863 * 17 16 15 39 39 H 1.08002 * 119.96875 * 180.02562 * 18 17 16 40 40 H 1.07995 * 120.03513 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.46753 * 55.00207 * 20 2 1 42 42 H 1.09000 * 109.47185 * 175.00126 * 20 2 1 43 43 H 0.96999 * 119.99864 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.7684 -0.0882 -2.0731 6 7 3.2358 -0.7487 -3.2168 7 6 4.0111 -0.0939 -4.1036 8 8 4.3676 1.0471 -3.8744 9 6 4.4251 -0.7561 -5.3450 10 6 4.1156 -2.0285 -5.7384 11 7 4.6867 -2.2396 -6.9245 12 6 5.3382 -1.1679 -7.2984 13 7 5.2067 -0.2181 -6.3515 14 6 5.7613 1.0684 -6.3787 15 6 4.9405 2.1824 -6.2639 16 6 5.4907 3.4490 -6.2853 17 6 6.8564 3.6086 -6.4323 18 6 7.6759 2.5014 -6.5525 19 6 7.1322 1.2320 -6.5266 20 6 2.0400 -0.7211 1.2493 21 6 1.6413 0.0571 2.4766 22 1 1.0799 0.9742 2.3757 23 6 1.9924 -0.4021 3.7283 24 7 2.6756 -1.5192 3.8512 25 14 1.4988 0.5630 5.2496 26 1 0.0188 0.6704 5.3090 27 1 1.9937 -0.1371 6.4621 28 1 2.0917 1.9230 5.1871 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7715 -1.7443 -1.4014 33 1 3.0021 -1.6777 -3.3699 34 1 3.5154 -2.7367 -5.1865 35 1 5.8929 -1.0616 -8.2190 36 1 3.8734 2.0584 -6.1532 37 1 4.8534 4.3158 -6.1913 38 1 7.2839 4.6002 -6.4529 39 1 8.7422 2.6292 -6.6668 40 1 7.7727 0.3676 -6.6201 41 1 1.6054 -1.7197 1.2952 42 1 3.1263 -0.7993 1.2056 43 1 2.9229 -1.8421 4.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324644574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:14 Heat of formation + Delta-G solvation = 93.004737 kcal Electronic energy + Delta-G solvation = -25849.774968 eV Core-core repulsion = 22090.151893 eV Total energy + Delta-G solvation = -3759.623075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.79679 -39.35790 -39.21784 -36.97495 -34.92826 -34.36075 -32.56172 -31.51354 -31.31483 -29.88799 -29.37167 -26.99871 -24.72169 -23.92010 -23.30775 -23.01084 -21.83074 -21.15690 -20.36116 -19.45340 -18.59546 -17.29619 -16.86206 -16.48186 -16.31761 -16.13983 -15.33502 -15.06608 -14.68577 -14.52258 -14.33590 -14.22840 -13.89083 -13.78270 -13.40479 -13.16715 -13.13720 -12.78566 -12.06643 -11.97155 -11.66835 -11.59151 -11.20255 -10.94375 -10.91439 -10.79703 -10.48966 -10.45387 -10.15444 -10.00677 -9.74670 -9.55320 -9.32240 -9.14423 -9.11698 -8.94011 -8.53802 -8.37878 -6.03026 -4.05102 0.53081 0.99568 1.16117 1.97624 2.27364 2.59743 2.76297 3.30679 3.33184 3.33955 3.37856 3.40409 4.13225 4.32076 4.44589 4.46417 4.52874 4.66297 4.73706 4.89683 4.99483 5.10122 5.13872 5.28265 5.32473 5.33763 5.50118 5.61421 5.91467 5.94202 5.99976 6.03670 6.08711 6.12218 6.12749 6.40218 6.42460 6.76010 6.84006 6.92374 6.93897 7.12450 7.44076 7.58905 7.62572 7.74801 7.94749 8.34874 8.51919 8.99830 9.58730 11.08412 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002329 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.777245 B =12019.652529 C =12930.796030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.041 4.041 3 H 0.080 0.920 4 C 0.112 3.888 5 N -0.253 5.253 6 N -0.580 5.580 7 C 0.606 3.394 8 O -0.502 6.502 9 C -0.075 4.075 10 C 0.042 3.958 11 N -0.490 5.490 12 C 0.218 3.782 13 N -0.380 5.380 14 C 0.104 3.896 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.112 4.112 19 C -0.107 4.107 20 C 0.034 3.966 21 C -0.517 4.517 22 H 0.059 0.941 23 C 0.058 3.942 24 N -0.895 5.895 25 Si 0.893 3.107 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.276 1.276 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.380 0.620 34 H 0.182 0.818 35 H 0.216 0.784 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 3.412 -25.158 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 H 0.099 0.901 4 C -0.102 4.102 5 N -0.055 5.055 6 N -0.320 5.320 7 C 0.392 3.608 8 O -0.376 6.376 9 C -0.191 4.191 10 C -0.111 4.111 11 N -0.207 5.207 12 C -0.063 4.063 13 N -0.057 5.057 14 C 0.014 3.986 15 C -0.086 4.086 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.005 4.005 21 C -0.555 4.555 22 H 0.077 0.923 23 C -0.144 4.144 24 N -0.535 5.535 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.202 1.202 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.218 0.782 34 H 0.199 0.801 35 H 0.232 0.768 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.707 4.335 -25.685 26.898 hybrid contribution -0.527 -0.383 1.384 1.530 sum 6.180 3.952 -24.301 25.384 Atomic orbital electron populations 1.21676 0.94236 1.01501 1.01200 1.20411 0.95539 1.00189 0.90099 0.90144 1.26829 0.91322 0.97965 0.94098 1.74639 1.12341 1.23852 0.94662 1.46605 1.51193 1.13455 1.20769 1.16290 0.78161 0.85501 0.80844 1.90873 1.53232 1.17150 1.76297 1.20751 1.07369 0.96599 0.94402 1.22718 1.01204 0.93382 0.93842 1.70204 1.12729 1.24708 1.13045 1.25332 1.01779 0.83527 0.95690 1.42668 1.36609 1.11066 1.15381 1.17626 0.92474 0.82003 1.06527 1.21015 1.00003 0.91334 0.96221 1.21072 0.95426 0.96711 0.99244 1.21325 0.93664 0.99212 0.98106 1.21009 1.00231 0.91530 1.00317 1.21039 0.92244 0.98683 1.00678 1.19126 0.96541 0.95574 0.89214 1.21117 1.35268 1.08492 0.90617 0.92263 1.25002 0.95147 0.95064 0.99152 1.69948 1.38652 1.21152 1.23703 0.86645 0.78888 0.80148 0.82267 1.20177 1.21366 1.20204 0.90682 0.94574 0.93062 0.87886 0.78159 0.80065 0.76790 0.85579 0.84965 0.85254 0.84985 0.85297 0.96006 0.96300 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.99 37.16 0.33 -1.84 16 2 C -0.04 -0.80 2.75 -91.77 -0.25 -1.05 16 3 H 0.08 1.68 8.11 -51.92 -0.42 1.26 16 4 C 0.11 1.91 9.66 -13.87 -0.13 1.77 16 5 N -0.25 -4.59 10.93 32.67 0.36 -4.23 16 6 N -0.58 -8.65 6.24 30.26 0.19 -8.46 16 7 C 0.61 9.57 7.87 -12.87 -0.10 9.47 16 8 O -0.50 -9.60 14.41 5.17 0.07 -9.52 16 9 C -0.07 -0.97 6.79 -82.08 -0.56 -1.52 16 10 C 0.04 0.46 11.37 -17.45 -0.20 0.26 16 11 N -0.49 -5.57 11.20 -14.35 -0.16 -5.73 16 12 C 0.22 2.09 12.31 -90.32 -1.11 0.98 16 13 N -0.38 -4.37 2.85 -58.64 -0.17 -4.54 16 14 C 0.10 1.17 5.30 -83.62 -0.44 0.72 16 15 C -0.07 -0.77 7.82 -39.40 -0.31 -1.08 16 16 C -0.11 -1.02 10.04 -39.61 -0.40 -1.41 16 17 C -0.10 -0.85 10.04 -39.55 -0.40 -1.25 16 18 C -0.11 -0.89 10.04 -39.61 -0.40 -1.28 16 19 C -0.11 -0.99 9.79 -39.40 -0.39 -1.37 16 20 C 0.03 0.82 4.43 -27.89 -0.12 0.69 16 21 C -0.52 -13.86 8.41 -34.44 -0.29 -14.15 16 22 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 25 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.44 8.00 -52.49 -0.42 1.02 16 33 H 0.38 4.24 7.57 -182.59 -1.38 2.86 16 34 H 0.18 1.45 7.46 -52.49 -0.39 1.06 16 35 H 0.22 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 1.57 7.87 -52.49 -0.41 1.16 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -34.69 375.00 -9.90 -44.59 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.70 Total: 1.11 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.86 Total: -9.55 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.95 Total: -48.44 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.69 -9.90 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324644574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.592 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds