Wall clock time and date at job start Tue Mar 31 2020 15:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46681 * 2 1 4 4 C 1.50703 * 109.47331 * 240.00322 * 2 1 3 5 5 N 1.28014 * 120.00125 * 119.99839 * 4 2 1 6 6 N 1.40100 * 119.99922 * 179.97438 * 5 4 2 7 7 C 1.34768 * 120.00270 * 180.02562 * 6 5 4 8 8 O 1.21720 * 119.99798 * 4.15408 * 7 6 5 9 9 C 1.46659 * 120.00332 * 184.15835 * 7 6 5 10 10 C 1.36735 * 126.85447 * 359.52392 * 9 7 6 11 11 N 1.33317 * 107.83948 * 180.02562 * 10 9 7 12 12 C 1.30880 * 109.74115 * 359.97438 * 11 10 9 13 13 N 1.34756 * 109.13549 * 0.02562 * 12 11 10 14 14 C 1.40123 * 126.50492 * 179.73480 * 13 12 11 15 15 C 1.38844 * 120.07025 * 123.42332 * 14 13 12 16 16 C 1.38113 * 119.93362 * 179.72696 * 15 14 13 17 17 C 1.38283 * 120.06394 * 0.55187 * 16 15 14 18 18 C 1.38276 * 120.13890 * 359.72208 * 17 16 15 19 19 C 1.38118 * 120.06680 * 0.02562 * 18 17 16 20 20 C 1.52996 * 109.47204 * 119.99618 * 2 1 3 21 21 C 1.50699 * 109.47320 * 295.00350 * 20 2 1 22 22 H 1.07997 * 119.99953 * 0.02562 * 21 20 2 23 23 C 1.37881 * 119.99836 * 179.97438 * 21 20 2 24 24 N 1.31517 * 120.00000 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46873 * 60.00643 * 25 23 21 27 27 H 1.48505 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47620 * 300.00566 * 25 23 21 29 29 H 1.09003 * 109.47280 * 300.00427 * 1 2 3 30 30 H 1.09000 * 109.46803 * 59.99872 * 1 2 3 31 31 H 1.08997 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.99512 * 299.99621 * 4 2 1 33 33 H 0.97007 * 119.99521 * 359.97438 * 6 5 4 34 34 H 1.08001 * 126.08413 * 0.02562 * 10 9 7 35 35 H 1.07998 * 125.43297 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.03107 * 0.02562 * 15 14 13 37 37 H 1.07998 * 119.97296 * 180.30108 * 16 15 14 38 38 H 1.08000 * 119.93123 * 179.74863 * 17 16 15 39 39 H 1.08002 * 119.96875 * 180.02562 * 18 17 16 40 40 H 1.07995 * 120.03513 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.46753 * 55.00207 * 20 2 1 42 42 H 1.09000 * 109.47185 * 175.00126 * 20 2 1 43 43 H 0.96999 * 119.99864 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.7684 -0.0882 -2.0731 6 7 3.2358 -0.7487 -3.2168 7 6 4.0111 -0.0939 -4.1036 8 8 4.3676 1.0471 -3.8744 9 6 4.4251 -0.7561 -5.3450 10 6 4.1156 -2.0285 -5.7384 11 7 4.6867 -2.2396 -6.9245 12 6 5.3382 -1.1679 -7.2984 13 7 5.2067 -0.2181 -6.3515 14 6 5.7613 1.0684 -6.3787 15 6 4.9405 2.1824 -6.2639 16 6 5.4907 3.4490 -6.2853 17 6 6.8564 3.6086 -6.4323 18 6 7.6759 2.5014 -6.5525 19 6 7.1322 1.2320 -6.5266 20 6 2.0400 -0.7211 1.2493 21 6 1.6413 0.0571 2.4766 22 1 1.0799 0.9742 2.3757 23 6 1.9924 -0.4021 3.7283 24 7 2.6756 -1.5192 3.8512 25 14 1.4988 0.5630 5.2496 26 1 0.0188 0.6704 5.3090 27 1 1.9937 -0.1371 6.4621 28 1 2.0917 1.9230 5.1871 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7715 -1.7443 -1.4014 33 1 3.0021 -1.6777 -3.3699 34 1 3.5154 -2.7367 -5.1865 35 1 5.8929 -1.0616 -8.2190 36 1 3.8734 2.0584 -6.1532 37 1 4.8534 4.3158 -6.1913 38 1 7.2839 4.6002 -6.4529 39 1 8.7422 2.6292 -6.6668 40 1 7.7727 0.3676 -6.6201 41 1 1.6054 -1.7197 1.2952 42 1 3.1263 -0.7993 1.2056 43 1 2.9229 -1.8421 4.7318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324644574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:14 Heat of formation + Delta-G solvation = 73.153906 kcal Electronic energy + Delta-G solvation = -25850.635765 eV Core-core repulsion = 22090.151893 eV Total energy + Delta-G solvation = -3760.483872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.63647 -40.46130 -40.05173 -38.40870 -36.43257 -35.23454 -34.38822 -32.82626 -32.09422 -30.79018 -30.26871 -28.84315 -26.14263 -25.07791 -24.19997 -23.97662 -23.08006 -22.12575 -21.49973 -20.65610 -19.72444 -18.72268 -18.03345 -17.84628 -17.27169 -17.16486 -16.51657 -16.22624 -15.98427 -15.72886 -15.23170 -15.05370 -14.94447 -14.84036 -14.62069 -14.51279 -14.45525 -13.86990 -13.72136 -13.23516 -12.81214 -12.75784 -12.69912 -12.49993 -12.34225 -12.25120 -11.89976 -11.78491 -11.37077 -11.32201 -11.28619 -11.15689 -10.91914 -10.50603 -10.12425 -10.01335 -9.83164 -9.67703 -8.15587 -6.24016 -0.27846 0.25850 0.32962 1.01977 1.03457 1.44314 1.46513 1.53775 1.70747 1.76159 2.19233 2.45369 2.63588 3.19184 3.24273 3.56327 3.77742 3.83044 3.83829 3.84350 4.00033 4.11938 4.14724 4.36518 4.38469 4.44903 4.56942 4.63054 4.66341 4.75197 4.92510 4.99207 5.20530 5.21794 5.28866 5.30207 5.32381 5.43979 5.48650 5.53747 5.72613 5.74163 5.87284 5.97978 6.08865 6.27561 6.40378 6.66263 6.90385 7.31090 7.44042 8.96210 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002329 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.777245 B =12019.652529 C =12930.796030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 H 0.060 0.940 4 C 0.116 3.884 5 N -0.286 5.286 6 N -0.570 5.570 7 C 0.604 3.396 8 O -0.545 6.545 9 C -0.108 4.108 10 C 0.059 3.941 11 N -0.512 5.512 12 C 0.236 3.764 13 N -0.384 5.384 14 C 0.083 3.917 15 C -0.091 4.091 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.111 4.111 20 C 0.041 3.959 21 C -0.529 4.529 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.934 5.934 25 Si 0.958 3.042 26 H -0.263 1.263 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.401 0.599 34 H 0.208 0.792 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.012 0.988 42 H -0.017 1.017 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 3.468 -26.584 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 H 0.079 0.921 4 C -0.098 4.098 5 N -0.088 5.088 6 N -0.312 5.312 7 C 0.393 3.607 8 O -0.421 6.421 9 C -0.223 4.223 10 C -0.095 4.095 11 N -0.229 5.229 12 C -0.045 4.045 13 N -0.061 5.061 14 C -0.007 4.007 15 C -0.110 4.110 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.130 4.130 20 C 0.002 3.998 21 C -0.567 4.567 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.187 1.187 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.242 0.758 34 H 0.225 0.775 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.030 0.970 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.081 4.381 -27.123 28.372 hybrid contribution -0.574 -0.392 1.704 1.841 sum 6.507 3.989 -25.418 26.539 Atomic orbital electron populations 1.21597 0.92012 1.02565 1.01698 1.20125 0.97342 0.98587 0.89399 0.92113 1.26601 0.91098 0.99077 0.92995 1.74493 1.12492 1.25909 0.95892 1.46390 1.50852 1.14300 1.19696 1.16752 0.77419 0.85092 0.81483 1.90840 1.54986 1.19007 1.77316 1.20481 1.10032 0.97476 0.94346 1.23174 0.99953 0.92782 0.93580 1.70287 1.13825 1.25549 1.13262 1.26167 1.00079 0.82374 0.95853 1.42799 1.36498 1.11479 1.15353 1.17859 0.93413 0.81732 1.07712 1.20995 0.99163 0.92698 0.98143 1.21320 0.96703 0.96338 0.99382 1.21698 0.92902 1.00838 0.96765 1.21443 1.01791 0.90830 0.98710 1.21322 0.91441 1.00052 1.00234 1.18955 0.94242 0.95441 0.91135 1.21566 1.34737 1.08749 0.91691 0.91648 1.25882 0.95225 0.96029 1.02497 1.70079 1.40092 1.22871 1.24377 0.85596 0.79180 0.78584 0.78284 1.18722 1.21264 1.19801 0.92076 0.92126 0.91711 0.84614 0.75846 0.77532 0.72978 0.87917 0.83998 0.82439 0.81865 0.83576 0.96958 0.99827 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.99 71.98 0.65 -3.32 16 2 C -0.03 -1.31 2.75 -11.54 -0.03 -1.34 16 3 H 0.06 2.60 8.11 -2.38 -0.02 2.58 16 4 C 0.12 3.91 9.66 88.67 0.86 4.76 16 5 N -0.29 -10.43 10.93 -50.46 -0.55 -10.98 16 6 N -0.57 -16.96 6.24 -176.39 -1.10 -18.06 16 7 C 0.60 19.52 7.87 86.44 0.68 20.20 16 8 O -0.55 -21.78 14.41 -4.41 -0.06 -21.84 16 9 C -0.11 -2.77 6.79 39.97 0.27 -2.50 16 10 C 0.06 1.22 11.37 84.12 0.96 2.18 16 11 N -0.51 -10.68 11.20 -199.30 -2.23 -12.91 16 12 C 0.24 4.09 12.31 180.24 2.22 6.31 16 13 N -0.38 -8.65 2.85 -339.42 -0.97 -9.62 16 14 C 0.08 1.85 5.30 38.11 0.20 2.06 16 15 C -0.09 -2.20 7.82 22.39 0.18 -2.02 16 16 C -0.12 -2.30 10.04 22.25 0.22 -2.07 16 17 C -0.10 -1.52 10.04 22.29 0.22 -1.29 16 18 C -0.11 -1.48 10.04 22.25 0.22 -1.26 16 19 C -0.11 -1.88 9.79 22.39 0.22 -1.66 16 20 C 0.04 2.02 4.43 29.85 0.13 2.15 16 21 C -0.53 -28.79 8.41 25.60 0.22 -28.57 16 22 H 0.07 3.39 7.06 -2.91 -0.02 3.37 16 23 C 0.00 0.07 5.46 84.66 0.46 0.54 16 24 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 25 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.06 2.17 6.95 -2.39 -0.02 2.16 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.14 3.57 8.00 -2.91 -0.02 3.55 16 33 H 0.40 8.51 7.57 -213.31 -1.61 6.89 16 34 H 0.21 2.88 7.46 -2.91 -0.02 2.86 16 35 H 0.25 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.10 2.85 7.87 -2.91 -0.02 2.82 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -77.80 375.00 4.49 -73.31 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.58 Total: 15.74 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 7.68 Total: -5.85 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.57 Total: -106.97 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -77.80 4.49 -73.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324644574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.460 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds