Wall clock time and date at job start Tue Mar 31 2020 14:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46503 * 2 1 4 4 C 1.53242 * 109.46999 * 240.00883 * 2 1 3 5 5 S 1.81739 * 108.90986 * 182.41041 * 4 2 1 6 6 C 1.81739 * 102.31255 * 54.46764 * 5 4 2 7 7 C 1.53239 * 108.79735 * 305.46178 * 6 5 4 8 8 N 1.46379 * 109.48868 * 57.65212 * 7 6 5 9 9 C 1.34773 * 119.64716 * 114.91404 * 8 7 6 10 10 O 1.21351 * 120.00148 * 174.95927 * 9 8 7 11 11 C 1.49455 * 119.99971 * 354.95947 * 9 8 7 12 12 O 1.21349 * 119.99613 * 275.48254 * 11 9 8 13 13 N 1.34779 * 120.00144 * 95.48369 * 11 9 8 14 14 C 1.46930 * 120.62627 * 4.53302 * 13 11 9 15 15 C 1.52761 * 109.00691 * 233.58422 * 14 13 11 16 16 C 1.53043 * 109.38508 * 305.59234 * 15 14 13 17 17 C 1.50693 * 109.46140 * 181.25852 * 16 15 14 18 18 H 1.08005 * 120.00400 * 265.80333 * 17 16 15 19 19 C 1.37875 * 120.00100 * 85.80017 * 17 16 15 20 20 N 1.31510 * 120.00317 * 185.20675 * 19 17 16 21 21 Si 1.86806 * 119.99975 * 5.20898 * 19 17 16 22 22 H 1.48496 * 109.47011 * 94.38983 * 21 19 17 23 23 H 1.48493 * 109.47045 * 214.39584 * 21 19 17 24 24 H 1.48504 * 109.46652 * 334.39748 * 21 19 17 25 25 C 1.53040 * 109.53766 * 61.23786 * 16 15 14 26 26 C 1.46923 * 120.63127 * 184.81707 * 13 11 9 27 27 H 1.09007 * 109.46865 * 177.96931 * 1 2 3 28 28 H 1.08998 * 109.47385 * 297.96510 * 1 2 3 29 29 H 1.09002 * 109.47271 * 57.97092 * 1 2 3 30 30 H 1.08991 * 109.58147 * 62.54398 * 4 2 1 31 31 H 1.09000 * 109.57768 * 302.27028 * 4 2 1 32 32 H 1.09009 * 109.58131 * 65.25119 * 6 5 4 33 33 H 1.08995 * 109.58544 * 185.66603 * 6 5 4 34 34 H 1.08997 * 109.46713 * 177.65629 * 7 6 5 35 35 H 1.09002 * 109.46841 * 297.64843 * 7 6 5 36 36 H 1.08993 * 109.58904 * 353.41967 * 14 13 11 37 37 H 1.09002 * 109.58336 * 113.85103 * 14 13 11 38 38 H 1.08993 * 109.56531 * 185.55904 * 15 14 13 39 39 H 1.08998 * 109.38355 * 65.51661 * 15 14 13 40 40 H 1.08996 * 109.45972 * 301.22305 * 16 15 14 41 41 H 0.97002 * 119.99886 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.50061 * 178.68382 * 25 16 15 43 43 H 1.09004 * 109.52473 * 58.60058 * 25 16 15 44 44 H 1.09003 * 109.58266 * 246.15645 * 26 13 11 45 45 H 1.09003 * 109.58671 * 6.57738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2513 5 16 3.8566 -0.7762 -1.2002 6 6 4.1762 -1.5447 0.4154 7 6 3.4522 -0.7373 1.4980 8 7 2.0209 -0.6880 1.1953 9 6 1.1429 -1.2842 2.0260 10 8 -0.0496 -1.1702 1.8320 11 6 1.6378 -2.0859 3.1862 12 8 1.9490 -3.2486 3.0316 13 7 1.7386 -1.5175 4.4041 14 6 1.2732 -0.1421 4.6290 15 6 2.4063 0.6707 5.2530 16 6 2.9056 -0.0385 6.5139 17 6 4.0024 0.7774 7.1479 18 1 5.0359 0.5657 6.9162 19 6 3.6868 1.7945 8.0236 20 7 4.6354 2.5723 8.4975 21 14 1.9115 2.0675 8.5372 22 1 1.6489 1.3506 9.8108 23 1 1.6692 3.5201 8.7276 24 1 1.0055 1.5486 7.4811 25 6 3.4478 -1.4208 6.1429 26 6 2.3215 -2.2592 5.5305 27 1 -0.3633 -1.0271 -0.0364 28 1 -0.3634 0.4819 0.9076 29 1 -0.3634 0.5450 -0.8712 30 1 1.7161 -0.1840 -2.1418 31 1 1.6455 -1.7378 -1.2738 32 1 3.8033 -2.5690 0.4129 33 1 5.2478 -1.5442 0.6146 34 1 3.6023 -1.2128 2.4672 35 1 3.8529 0.2761 1.5246 36 1 0.9845 0.3060 3.6784 37 1 0.4187 -0.1516 5.3056 38 1 2.0418 1.6640 5.5145 39 1 3.2239 0.7598 4.5377 40 1 2.0816 -0.1490 7.2188 41 1 4.4133 3.2876 9.1139 42 1 3.8246 -1.9160 7.0378 43 1 4.2558 -1.3129 5.4192 44 1 1.5540 -2.4449 6.2819 45 1 2.7241 -3.2075 5.1743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325732421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:13 Heat of formation + Delta-G solvation = -46.711686 kcal Electronic energy + Delta-G solvation = -27443.482885 eV Core-core repulsion = 23780.952451 eV Total energy + Delta-G solvation = -3662.530434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32749 -39.32322 -37.27341 -36.85580 -33.78145 -33.50908 -31.68216 -30.85818 -30.49563 -27.65361 -26.99865 -25.07878 -23.77212 -22.79743 -22.78102 -21.46415 -19.71681 -18.74531 -17.70444 -17.17966 -16.94513 -16.80272 -16.32802 -15.55506 -15.36922 -14.87388 -14.69630 -14.46429 -14.12218 -13.93958 -13.70198 -13.47224 -13.22276 -13.07944 -13.02868 -12.91759 -12.70588 -12.64220 -12.29722 -12.14301 -11.92829 -11.61777 -11.36046 -11.10401 -10.93113 -10.89471 -10.56597 -10.20043 -10.13823 -9.79723 -9.54558 -9.31367 -9.24903 -9.04434 -8.64006 -8.47539 -7.98997 -6.18694 -4.18880 1.36755 1.98377 2.01986 2.13830 2.54109 3.16811 3.19183 3.28111 3.29966 4.03291 4.26655 4.31148 4.43841 4.63619 4.71232 4.81576 4.90077 5.03457 5.09438 5.17871 5.28251 5.33446 5.43789 5.47397 5.52273 5.53610 5.61935 5.76445 5.82502 5.84148 5.93173 6.04908 6.14682 6.30140 6.46277 6.54611 6.61504 6.68452 6.77786 7.11730 7.28583 7.30643 7.60140 7.63449 7.85792 8.39874 8.86370 9.44084 10.94364 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003846 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.175464 B = 7277.660494 C = 7476.216532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.099 4.099 5 S -0.254 6.254 6 C -0.101 4.101 7 C 0.105 3.895 8 N -0.598 5.598 9 C 0.521 3.479 10 O -0.503 6.503 11 C 0.508 3.492 12 O -0.526 6.526 13 N -0.582 5.582 14 C 0.100 3.900 15 C -0.125 4.125 16 C 0.015 3.985 17 C -0.514 4.514 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.872 3.128 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.260 1.260 25 C -0.115 4.115 26 C 0.105 3.895 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -5.224 -16.403 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.248 4.248 5 S -0.026 6.026 6 C -0.250 4.250 7 C -0.019 4.019 8 N -0.334 5.334 9 C 0.304 3.696 10 O -0.378 6.378 11 C 0.290 3.710 12 O -0.403 6.403 13 N -0.316 5.316 14 C -0.023 4.023 15 C -0.164 4.164 16 C -0.005 4.005 17 C -0.552 4.552 18 H 0.091 0.909 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.699 3.301 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.185 1.185 25 C -0.153 4.153 26 C -0.016 4.016 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.913 -5.277 -17.242 18.688 hybrid contribution -1.630 -0.105 1.262 2.064 sum -6.543 -5.382 -15.980 18.086 Atomic orbital electron populations 1.22319 0.91262 1.03942 1.01909 1.21494 0.96737 0.95778 0.82166 0.88767 1.24014 0.93954 1.05026 1.01787 1.86919 1.07819 1.81707 1.26181 1.23883 1.05228 1.02143 0.93726 1.21924 0.78970 1.02382 0.98641 1.47995 1.07249 1.53642 1.24474 1.20505 0.86800 0.78509 0.83750 1.90878 1.15458 1.58695 1.72736 1.20224 0.78855 0.87813 0.84072 1.90776 1.49471 1.15882 1.84184 1.48266 1.58779 1.15645 1.08869 1.22005 0.98879 0.80475 1.00909 1.22230 0.95659 0.98815 0.99664 1.19139 0.96765 0.91839 0.92709 1.20944 0.93531 1.15185 1.25535 0.90901 1.25048 0.96867 0.95283 0.95748 1.69908 1.32666 1.18741 1.32184 0.86944 0.86143 0.77450 0.79524 1.20408 1.21445 1.18460 1.21930 0.96044 0.97227 1.00104 1.21970 0.96874 0.95778 0.86961 0.90605 0.90251 0.93270 0.86388 0.89345 0.88940 0.85994 0.88320 0.88372 0.91322 0.91033 0.91312 0.92184 0.94936 0.92599 0.90762 0.92343 0.91342 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.55 37.16 0.28 -1.12 16 2 C 0.14 1.40 3.32 -67.86 -0.23 1.18 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.10 -0.87 5.94 37.28 0.22 -0.65 16 5 S -0.25 -2.54 22.30 -107.50 -2.40 -4.93 16 6 C -0.10 -0.98 6.67 37.28 0.25 -0.73 16 7 C 0.11 1.13 6.12 -3.98 -0.02 1.10 16 8 N -0.60 -7.05 2.79 -166.50 -0.46 -7.52 16 9 C 0.52 7.57 5.36 -11.58 -0.06 7.51 16 10 O -0.50 -7.97 12.20 5.50 0.07 -7.90 16 11 C 0.51 8.13 5.37 -11.58 -0.06 8.07 16 12 O -0.53 -9.52 16.53 5.50 0.09 -9.43 16 13 N -0.58 -9.12 2.98 -173.54 -0.52 -9.64 16 14 C 0.10 1.55 6.33 -3.93 -0.02 1.52 16 15 C -0.13 -2.25 4.99 -26.83 -0.13 -2.39 16 16 C 0.01 0.30 1.60 -91.73 -0.15 0.15 16 17 C -0.51 -13.03 8.86 -34.44 -0.31 -13.33 16 18 H 0.07 2.03 8.06 -52.48 -0.42 1.61 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -25.91 13.96 55.43 0.77 -25.14 16 21 Si 0.87 19.87 26.40 -169.99 -4.49 15.38 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -5.47 5.96 56.52 0.34 -5.13 16 25 C -0.11 -1.99 5.34 -26.61 -0.14 -2.13 16 26 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16 27 H 0.08 0.92 6.63 -51.93 -0.34 0.57 16 28 H 0.08 0.96 6.71 -51.93 -0.35 0.61 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.19 6.21 -51.93 -0.32 0.86 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.99 6.29 -51.93 -0.33 0.66 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.31 6.90 -51.93 -0.36 0.95 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.68 5.67 -51.93 -0.29 0.39 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -29.72 356.18 -9.12 -38.84 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.06 Total: 2.33 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.50 Total: 2.63 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.21 Total: -42.29 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.16 Total: -17.33 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.49 Total: 15.38 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.40 Total: -4.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.72 -9.12 -38.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325732421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.869 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds