Wall clock time and date at job start Tue Mar 31 2020 14:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46503 * 2 1 4 4 C 1.53242 * 109.46999 * 240.00883 * 2 1 3 5 5 S 1.81739 * 108.90986 * 182.41041 * 4 2 1 6 6 C 1.81739 * 102.31255 * 54.46764 * 5 4 2 7 7 C 1.53239 * 108.79735 * 305.46178 * 6 5 4 8 8 N 1.46379 * 109.48868 * 57.65212 * 7 6 5 9 9 C 1.34773 * 119.64716 * 114.91404 * 8 7 6 10 10 O 1.21351 * 120.00148 * 174.95927 * 9 8 7 11 11 C 1.49455 * 119.99971 * 354.95947 * 9 8 7 12 12 O 1.21349 * 119.99613 * 275.48254 * 11 9 8 13 13 N 1.34779 * 120.00144 * 95.48369 * 11 9 8 14 14 C 1.46930 * 120.62627 * 4.53302 * 13 11 9 15 15 C 1.52761 * 109.00691 * 233.58422 * 14 13 11 16 16 C 1.53043 * 109.38508 * 305.59234 * 15 14 13 17 17 C 1.50693 * 109.46140 * 181.25852 * 16 15 14 18 18 H 1.08005 * 120.00400 * 265.80333 * 17 16 15 19 19 C 1.37875 * 120.00100 * 85.80017 * 17 16 15 20 20 N 1.31510 * 120.00317 * 185.20675 * 19 17 16 21 21 Si 1.86806 * 119.99975 * 5.20898 * 19 17 16 22 22 H 1.48496 * 109.47011 * 94.38983 * 21 19 17 23 23 H 1.48493 * 109.47045 * 214.39584 * 21 19 17 24 24 H 1.48504 * 109.46652 * 334.39748 * 21 19 17 25 25 C 1.53040 * 109.53766 * 61.23786 * 16 15 14 26 26 C 1.46923 * 120.63127 * 184.81707 * 13 11 9 27 27 H 1.09007 * 109.46865 * 177.96931 * 1 2 3 28 28 H 1.08998 * 109.47385 * 297.96510 * 1 2 3 29 29 H 1.09002 * 109.47271 * 57.97092 * 1 2 3 30 30 H 1.08991 * 109.58147 * 62.54398 * 4 2 1 31 31 H 1.09000 * 109.57768 * 302.27028 * 4 2 1 32 32 H 1.09009 * 109.58131 * 65.25119 * 6 5 4 33 33 H 1.08995 * 109.58544 * 185.66603 * 6 5 4 34 34 H 1.08997 * 109.46713 * 177.65629 * 7 6 5 35 35 H 1.09002 * 109.46841 * 297.64843 * 7 6 5 36 36 H 1.08993 * 109.58904 * 353.41967 * 14 13 11 37 37 H 1.09002 * 109.58336 * 113.85103 * 14 13 11 38 38 H 1.08993 * 109.56531 * 185.55904 * 15 14 13 39 39 H 1.08998 * 109.38355 * 65.51661 * 15 14 13 40 40 H 1.08996 * 109.45972 * 301.22305 * 16 15 14 41 41 H 0.97002 * 119.99886 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.50061 * 178.68382 * 25 16 15 43 43 H 1.09004 * 109.52473 * 58.60058 * 25 16 15 44 44 H 1.09003 * 109.58266 * 246.15645 * 26 13 11 45 45 H 1.09003 * 109.58671 * 6.57738 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0407 -0.7222 -1.2513 5 16 3.8566 -0.7762 -1.2002 6 6 4.1762 -1.5447 0.4154 7 6 3.4522 -0.7373 1.4980 8 7 2.0209 -0.6880 1.1953 9 6 1.1429 -1.2842 2.0260 10 8 -0.0496 -1.1702 1.8320 11 6 1.6378 -2.0859 3.1862 12 8 1.9490 -3.2486 3.0316 13 7 1.7386 -1.5175 4.4041 14 6 1.2732 -0.1421 4.6290 15 6 2.4063 0.6707 5.2530 16 6 2.9056 -0.0385 6.5139 17 6 4.0024 0.7774 7.1479 18 1 5.0359 0.5657 6.9162 19 6 3.6868 1.7945 8.0236 20 7 4.6354 2.5723 8.4975 21 14 1.9115 2.0675 8.5372 22 1 1.6489 1.3506 9.8108 23 1 1.6692 3.5201 8.7276 24 1 1.0055 1.5486 7.4811 25 6 3.4478 -1.4208 6.1429 26 6 2.3215 -2.2592 5.5305 27 1 -0.3633 -1.0271 -0.0364 28 1 -0.3634 0.4819 0.9076 29 1 -0.3634 0.5450 -0.8712 30 1 1.7161 -0.1840 -2.1418 31 1 1.6455 -1.7378 -1.2738 32 1 3.8033 -2.5690 0.4129 33 1 5.2478 -1.5442 0.6146 34 1 3.6023 -1.2128 2.4672 35 1 3.8529 0.2761 1.5246 36 1 0.9845 0.3060 3.6784 37 1 0.4187 -0.1516 5.3056 38 1 2.0418 1.6640 5.5145 39 1 3.2239 0.7598 4.5377 40 1 2.0816 -0.1490 7.2188 41 1 4.4133 3.2876 9.1139 42 1 3.8246 -1.9160 7.0378 43 1 4.2558 -1.3129 5.4192 44 1 1.5540 -2.4449 6.2819 45 1 2.7241 -3.2075 5.1743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325732421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:12 Heat of formation + Delta-G solvation = -64.507354 kcal Electronic energy + Delta-G solvation = -27444.254563 eV Core-core repulsion = 23780.952451 eV Total energy + Delta-G solvation = -3663.302112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44777 -40.52224 -38.67224 -37.86287 -35.36796 -34.45601 -33.43960 -32.17774 -31.45069 -28.72182 -28.28261 -26.39527 -24.70839 -24.22134 -24.03100 -22.59435 -21.09842 -19.92070 -18.99538 -18.83933 -18.17664 -17.80791 -17.34540 -16.62039 -16.43648 -16.20231 -16.00909 -15.58491 -15.22831 -15.07244 -14.89565 -14.73893 -14.62303 -14.47592 -14.18933 -14.00343 -13.91302 -13.73281 -13.44507 -13.28410 -13.12306 -12.86955 -12.47813 -12.43545 -12.24520 -12.11436 -12.02552 -11.78108 -11.47561 -11.16465 -11.07040 -11.00388 -10.63127 -10.22550 -10.10981 -9.83085 -8.78211 -8.24138 -6.27837 0.59541 0.86438 0.89574 1.34463 1.38707 1.41521 1.42426 1.51382 2.06737 2.39262 2.89858 3.12102 3.47574 3.61321 3.80099 3.86954 3.92194 4.05164 4.09386 4.10501 4.17853 4.21762 4.37787 4.43943 4.47922 4.50026 4.60589 4.67937 4.72554 4.76196 4.76295 4.94529 5.00771 5.06243 5.08302 5.14696 5.29926 5.44495 5.55889 5.69956 5.75424 5.78682 6.03612 6.36663 6.54075 6.60613 6.80580 7.38631 8.92582 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003846 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.175464 B = 7277.660494 C = 7476.216532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.140 3.860 3 H 0.111 0.889 4 C -0.091 4.091 5 S -0.264 6.264 6 C -0.095 4.095 7 C 0.104 3.896 8 N -0.591 5.591 9 C 0.520 3.480 10 O -0.519 6.519 11 C 0.509 3.491 12 O -0.550 6.550 13 N -0.582 5.582 14 C 0.109 3.891 15 C -0.118 4.118 16 C 0.012 3.988 17 C -0.510 4.510 18 H 0.031 0.969 19 C 0.014 3.986 20 N -0.952 5.952 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.228 1.228 25 C -0.107 4.107 26 C 0.112 3.888 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -5.314 -18.020 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.036 3.964 3 H 0.128 0.872 4 C -0.239 4.239 5 S -0.036 6.036 6 C -0.244 4.244 7 C -0.020 4.020 8 N -0.325 5.325 9 C 0.303 3.697 10 O -0.395 6.395 11 C 0.292 3.708 12 O -0.429 6.429 13 N -0.315 5.315 14 C -0.013 4.013 15 C -0.157 4.157 16 C -0.007 4.007 17 C -0.548 4.548 18 H 0.050 0.950 19 C -0.183 4.183 20 N -0.592 5.592 21 Si 0.757 3.243 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.150 1.150 25 C -0.145 4.145 26 C -0.009 4.009 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.743 -5.378 -18.895 20.771 hybrid contribution -0.930 -0.102 1.711 1.950 sum -7.673 -5.481 -17.184 19.601 Atomic orbital electron populations 1.22177 0.91343 1.02866 1.02304 1.21704 0.96624 0.96427 0.81598 0.87167 1.24018 0.92870 1.04855 1.02205 1.86991 1.08931 1.81536 1.26144 1.23829 1.05963 1.01219 0.93404 1.22008 0.78521 1.03147 0.98346 1.48078 1.07326 1.52669 1.24473 1.20281 0.86848 0.78803 0.83765 1.90895 1.15995 1.59527 1.73112 1.20532 0.78179 0.87659 0.84426 1.90760 1.50545 1.16999 1.84548 1.48295 1.58621 1.15693 1.08940 1.21904 0.97802 0.79921 1.01687 1.22027 0.96645 0.98537 0.98500 1.19138 0.95202 0.92791 0.93573 1.21237 0.93219 1.15235 1.25090 0.95027 1.25884 1.01213 0.95171 0.96031 1.70069 1.35261 1.20058 1.33810 0.85967 0.81412 0.77051 0.79888 1.20291 1.21976 1.15025 1.21781 0.96640 0.95965 1.00148 1.21890 0.96466 0.95366 0.87194 0.92563 0.91928 0.90540 0.83941 0.90108 0.90047 0.84587 0.89679 0.87083 0.89836 0.90063 0.91973 0.92254 0.94656 0.92787 0.90874 0.92885 0.89880 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.55 71.98 0.54 -1.80 16 2 C 0.14 2.40 3.32 45.09 0.15 2.55 16 3 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.09 -1.37 5.94 72.06 0.43 -0.94 16 5 S -0.26 -4.71 22.30 -56.49 -1.26 -5.97 16 6 C -0.10 -1.71 6.67 72.06 0.48 -1.23 16 7 C 0.10 2.06 6.12 86.48 0.53 2.59 16 8 N -0.59 -12.83 2.79 -799.05 -2.23 -15.06 16 9 C 0.52 14.28 5.36 87.27 0.47 14.75 16 10 O -0.52 -15.65 12.20 -3.25 -0.04 -15.69 16 11 C 0.51 15.52 5.37 87.27 0.47 15.99 16 12 O -0.55 -19.31 16.53 -3.24 -0.05 -19.36 16 13 N -0.58 -17.06 2.98 -821.30 -2.45 -19.51 16 14 C 0.11 3.09 6.33 86.22 0.55 3.64 16 15 C -0.12 -4.05 4.99 30.53 0.15 -3.89 16 16 C 0.01 0.47 1.60 -11.51 -0.02 0.45 16 17 C -0.51 -26.22 8.86 25.60 0.23 -25.99 16 18 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 19 C 0.01 0.75 5.47 84.65 0.46 1.21 16 20 N -0.95 -56.59 13.96 21.45 0.30 -56.29 16 21 Si 0.93 40.40 26.40 68.60 1.81 42.21 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.23 -8.57 5.96 99.48 0.59 -7.97 16 25 C -0.11 -3.61 5.34 30.67 0.16 -3.45 16 26 C 0.11 3.24 6.42 86.36 0.55 3.79 16 27 H 0.06 1.27 6.63 -2.38 -0.02 1.25 16 28 H 0.06 1.38 6.71 -2.39 -0.02 1.36 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.96 6.21 -2.39 -0.01 1.94 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.17 6.29 -2.39 -0.02 2.16 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.22 6.90 -2.39 -0.02 2.20 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.39 5.67 -2.39 -0.01 1.38 16 41 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.09 2.60 7.03 -2.39 -0.02 2.58 16 Total: -1.00 -65.20 356.18 2.11 -63.09 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.87 Total: 18.91 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.16 Total: 7.67 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -4.38 Total: -90.86 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.09 Total: -35.06 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.81 Total: 42.21 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.26 Total: -5.97 kcal Total: -65.20 2.11 -63.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325732421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.413 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds