Wall clock time and date at job start Tue Mar 31 2020 14:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58163 * 2 1 4 4 C 1.53234 * 109.58568 * 120.27760 * 2 1 3 5 5 N 1.46376 * 109.49232 * 62.13603 * 4 2 1 6 6 C 1.34769 * 119.65120 * 245.09236 * 5 4 2 7 7 O 1.21355 * 119.99874 * 5.05256 * 6 5 4 8 8 C 1.49446 * 120.00229 * 185.06005 * 6 5 4 9 9 O 1.21357 * 120.00086 * 272.72527 * 8 6 5 10 10 N 1.34774 * 120.00215 * 92.72647 * 8 6 5 11 11 C 1.46503 * 119.99979 * 185.04152 * 10 8 6 12 12 C 1.52999 * 109.47090 * 175.04245 * 11 10 8 13 13 C 1.50700 * 115.55164 * 59.97394 * 12 11 10 14 14 H 1.07994 * 119.99991 * 215.53598 * 13 12 11 15 15 C 1.37877 * 119.99867 * 35.81146 * 13 12 11 16 16 N 1.31516 * 119.99747 * 8.80521 * 15 13 12 17 17 Si 1.86798 * 119.99957 * 188.80472 * 15 13 12 18 18 H 1.48498 * 109.46960 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46867 * 119.99985 * 17 15 13 20 20 H 1.48497 * 109.47220 * 239.99901 * 17 15 13 21 21 C 1.53009 * 117.49884 * 205.64542 * 12 11 10 22 22 C 1.53006 * 117.49834 * 274.30006 * 12 11 10 23 23 C 1.46377 * 120.70049 * 65.36066 * 5 4 2 24 24 C 1.53748 * 109.21081 * 294.63769 * 23 5 4 25 25 H 1.09001 * 109.81336 * 297.93271 * 24 23 5 26 26 C 1.52997 * 109.51583 * 177.55644 * 24 23 5 27 27 S 1.81738 * 109.58134 * 239.59009 * 2 1 3 28 28 H 1.09005 * 109.46909 * 299.72179 * 1 2 3 29 29 H 1.08989 * 109.47373 * 59.72332 * 1 2 3 30 30 H 1.09006 * 109.46553 * 179.72508 * 1 2 3 31 31 H 1.09000 * 109.46800 * 302.13408 * 4 2 1 32 32 H 1.08997 * 109.46684 * 182.14579 * 4 2 1 33 33 H 0.96999 * 119.99968 * 5.03387 * 10 8 6 34 34 H 1.09003 * 109.47208 * 55.04304 * 11 10 8 35 35 H 1.08995 * 109.47145 * 295.04521 * 11 10 8 36 36 H 0.97005 * 119.99716 * 184.99466 * 16 15 13 37 37 H 1.08997 * 117.49416 * 215.00692 * 21 12 11 38 38 H 1.09003 * 117.49690 * 0.02562 * 21 12 11 39 39 H 1.08997 * 117.50014 * 359.97438 * 22 12 11 40 40 H 1.09002 * 117.49441 * 144.97639 * 22 12 11 41 41 H 1.08997 * 109.46928 * 54.65122 * 23 5 4 42 42 H 1.09005 * 109.46937 * 174.63432 * 23 5 4 43 43 H 1.09002 * 109.46953 * 300.78817 * 26 24 23 44 44 H 1.09002 * 109.47196 * 60.78697 * 26 24 23 45 45 H 1.08998 * 109.47623 * 180.79005 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7279 1.2468 5 7 1.5998 -2.1224 1.2158 6 6 0.7412 -2.5697 2.1533 7 8 0.2689 -1.7974 2.9615 8 6 0.3708 -4.0169 2.1978 9 8 -0.5546 -4.4272 1.5284 10 7 1.0644 -4.8663 2.9812 11 6 0.7742 -6.3018 2.9420 12 6 1.7760 -7.0489 3.8246 13 6 1.7799 -6.6560 5.2795 14 1 2.7074 -6.6421 5.8325 15 6 0.5986 -6.3198 5.9059 16 7 -0.5485 -6.5065 5.2903 17 14 0.6275 -5.5989 7.6290 18 1 2.0327 -5.4897 8.0963 19 1 0.0058 -4.2504 7.6118 20 1 -0.1332 -6.4830 8.5482 21 6 2.0585 -8.5145 3.4879 22 6 3.1136 -7.4446 3.1960 23 6 2.0831 -3.0377 0.1808 24 6 1.5687 -2.5684 -1.1900 25 1 0.4792 -2.5958 -1.2049 26 6 2.1199 -3.4851 -2.2839 27 16 2.1391 -0.8667 -1.4767 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5181 -0.8874 30 1 -0.3633 -1.0277 -0.0049 31 1 1.6505 -0.2413 2.1393 32 1 3.1330 -0.6936 1.2644 33 1 1.7559 -4.5272 3.5710 34 1 0.8553 -6.6610 1.9160 35 1 -0.2365 -6.4783 3.3098 36 1 -1.3739 -6.2038 5.7003 37 1 2.2472 -9.1944 4.3187 38 1 1.5310 -8.9462 2.6372 39 1 3.2798 -7.1730 2.1536 40 1 3.9966 -7.4203 3.8347 41 1 3.1731 -3.0427 0.1804 42 1 1.7155 -4.0434 0.3847 43 1 3.2094 -3.4600 -2.2642 44 1 1.7767 -4.5050 -2.1103 45 1 1.7662 -3.1434 -3.2567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326144681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:47 Heat of formation + Delta-G solvation = -42.954637 kcal Electronic energy + Delta-G solvation = -26968.863224 eV Core-core repulsion = 23306.495708 eV Total energy + Delta-G solvation = -3662.367516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64752 -38.45583 -36.95363 -36.71468 -34.27503 -33.37921 -32.47032 -32.28118 -27.92419 -26.97045 -26.19793 -25.52099 -23.35179 -22.30761 -21.41305 -21.13337 -19.59138 -19.27227 -18.07502 -17.07981 -16.51275 -16.18521 -15.84768 -15.29119 -15.21918 -14.90057 -14.84841 -14.27611 -14.06331 -14.00073 -13.49794 -13.20884 -13.18966 -13.02920 -12.81079 -12.47212 -12.28792 -11.93947 -11.92353 -11.78746 -11.64394 -11.52816 -11.15279 -11.05272 -10.84463 -10.81596 -10.58298 -10.36148 -9.96883 -9.74716 -9.27453 -9.11072 -9.06186 -8.95613 -8.45207 -8.12145 -7.89198 -6.14709 -4.27200 1.45553 2.22305 2.30349 2.42499 2.97357 3.20692 3.31467 3.32257 3.74460 4.27070 4.30668 4.49042 4.62674 4.67198 4.77830 4.84760 4.93768 5.05312 5.17415 5.32811 5.40628 5.40855 5.46423 5.48106 5.57455 5.61205 5.68299 5.86440 5.87298 6.01763 6.16213 6.18687 6.40894 6.44406 6.54227 6.75363 6.92161 6.95569 7.12029 7.22993 7.46984 7.84156 7.85113 8.05878 8.20627 8.58107 8.72901 9.37055 10.81525 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.004009 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.682420 B = 6983.422688 C = 7949.019088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 H 0.120 0.880 4 C 0.112 3.888 5 N -0.604 5.604 6 C 0.517 3.483 7 O -0.507 6.507 8 C 0.504 3.496 9 O -0.531 6.531 10 N -0.667 5.667 11 C 0.148 3.852 12 C 0.036 3.964 13 C -0.498 4.498 14 H 0.063 0.937 15 C 0.075 3.925 16 N -0.868 5.868 17 Si 0.890 3.110 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.282 1.282 21 C -0.192 4.192 22 C -0.210 4.210 23 C 0.111 3.889 24 C -0.068 4.068 25 H 0.097 0.903 26 C -0.131 4.131 27 S -0.254 6.254 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.405 0.595 34 H 0.033 0.967 35 H 0.125 0.875 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.730 9.585 -12.526 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 H 0.138 0.862 4 C -0.012 4.012 5 N -0.340 5.340 6 C 0.300 3.700 7 O -0.380 6.380 8 C 0.282 3.718 9 O -0.409 6.409 10 N -0.316 5.316 11 C 0.026 3.974 12 C 0.035 3.965 13 C -0.535 4.535 14 H 0.081 0.919 15 C -0.130 4.130 16 N -0.504 5.504 17 Si 0.717 3.283 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.208 1.208 21 C -0.231 4.231 22 C -0.247 4.247 23 C -0.014 4.014 24 C -0.198 4.198 25 H 0.115 0.885 26 C -0.190 4.190 27 S -0.027 6.027 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.051 0.949 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.181 10.065 -13.361 17.833 hybrid contribution -0.419 0.067 2.136 2.178 sum 5.762 10.131 -11.225 16.182 Atomic orbital electron populations 1.21992 0.92487 1.03086 1.02727 1.23619 0.99807 1.01827 0.94642 0.86193 1.21771 1.00051 0.80928 0.98436 1.47911 1.45611 1.11296 1.29172 1.20951 0.78082 0.90260 0.80728 1.90768 1.51014 1.56689 1.39515 1.19747 0.84197 0.85500 0.82309 1.90773 1.28533 1.76400 1.45180 1.45933 1.36864 1.08738 1.40063 1.21395 1.04344 0.76022 0.95628 1.19170 0.90543 0.92145 0.94640 1.20549 0.93589 1.46884 0.92498 0.91865 1.24956 0.95198 0.94785 0.98045 1.69761 0.97879 1.43852 1.38927 0.86561 0.78340 0.79140 0.84268 1.19593 1.20588 1.20846 1.22929 1.03940 0.94614 1.01628 1.22944 0.94689 1.07742 0.99330 1.22066 1.00448 0.93685 0.85195 1.23681 1.03911 0.93977 0.98248 0.88509 1.21565 1.01819 0.98688 0.96940 1.86786 1.75608 1.07893 1.32380 0.91344 0.91507 0.92267 0.87507 0.89439 0.76032 0.94904 0.85757 0.92463 0.90062 0.91407 0.91333 0.90483 0.89070 0.88299 0.91316 0.90472 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.99 37.16 0.33 -1.27 16 2 C -0.07 -0.69 3.46 -26.61 -0.09 -0.78 16 3 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 1.23 5.64 -3.99 -0.02 1.20 16 5 N -0.60 -8.02 2.13 -173.79 -0.37 -8.39 16 6 C 0.52 9.07 7.41 -11.59 -0.09 8.98 16 7 O -0.51 -10.22 16.42 5.49 0.09 -10.13 16 8 C 0.50 10.03 5.49 -11.59 -0.06 9.96 16 9 O -0.53 -11.97 17.09 5.49 0.09 -11.88 16 10 N -0.67 -13.42 5.44 -60.73 -0.33 -13.75 16 11 C 0.15 3.26 4.87 -4.04 -0.02 3.24 16 12 C 0.04 0.79 1.91 -155.65 -0.30 0.50 16 13 C -0.50 -12.29 8.55 -34.44 -0.29 -12.58 16 14 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 15 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 16 N -0.87 -23.10 10.61 55.43 0.59 -22.52 16 17 Si 0.89 20.22 29.55 -169.99 -5.02 15.20 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.19 -3.97 9.95 -26.69 -0.27 -4.24 16 22 C -0.21 -4.01 9.95 -26.69 -0.27 -4.27 16 23 C 0.11 1.28 5.47 -3.72 -0.02 1.26 16 24 C -0.07 -0.73 2.93 -26.34 -0.08 -0.81 16 25 H 0.10 1.20 7.33 -51.93 -0.38 0.81 16 26 C -0.13 -1.14 9.22 37.16 0.34 -0.80 16 27 S -0.25 -2.66 21.09 -107.50 -2.27 -4.92 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.67 8.14 -51.94 -0.42 0.24 16 30 H 0.06 0.80 6.45 -51.93 -0.33 0.47 16 31 H 0.11 1.27 6.91 -51.93 -0.36 0.91 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 7.90 8.14 -40.82 -0.33 7.57 16 34 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.13 3.21 5.65 -51.93 -0.29 2.92 16 36 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.29 6.15 -51.93 -0.32 0.97 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -28.74 375.35 -9.54 -38.28 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.06 Total: 10.25 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.92 Total: 2.20 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.11 Total: -44.66 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.18 Total: -22.00 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.27 Total: -4.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.74 -9.54 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326144681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.674 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds