Wall clock time and date at job start Tue Mar 31 2020 14:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.69931 * 2 1 4 4 S 1.83961 * 110.78767 * 236.47986 * 2 1 3 5 5 C 1.83956 * 94.80834 * 207.23237 * 4 2 1 6 6 C 1.54261 * 102.58033 * 34.48999 * 5 4 2 7 7 C 1.52332 * 112.58730 * 335.47391 * 6 5 4 8 8 H 1.09007 * 108.75303 * 239.25609 * 7 6 5 9 9 N 1.46503 * 108.86876 * 120.81896 * 7 6 5 10 10 C 1.34784 * 119.99897 * 92.31538 * 9 7 6 11 11 O 1.21349 * 119.99821 * 0.02562 * 10 9 7 12 12 C 1.49449 * 119.99574 * 180.02562 * 10 9 7 13 13 O 1.21345 * 120.00549 * 353.28129 * 12 10 9 14 14 N 1.34781 * 119.99463 * 173.28261 * 12 10 9 15 15 C 1.46920 * 120.63411 * 351.55048 * 14 12 10 16 16 C 1.53194 * 108.77422 * 233.61160 * 15 14 12 17 17 C 1.53041 * 109.31177 * 305.36120 * 16 15 14 18 18 C 1.53039 * 109.53721 * 61.36555 * 17 16 15 19 19 H 1.08999 * 109.49896 * 58.62226 * 18 17 16 20 20 C 1.50701 * 109.49757 * 178.68566 * 18 17 16 21 21 H 1.08000 * 120.00175 * 26.62717 * 20 18 17 22 22 C 1.37873 * 119.99876 * 206.63750 * 20 18 17 23 23 N 1.31512 * 120.00096 * 358.38113 * 22 20 18 24 24 Si 1.86800 * 119.99933 * 178.38665 * 22 20 18 25 25 H 1.48501 * 109.47117 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.47340 * 299.99534 * 24 22 20 27 27 H 1.48500 * 109.47223 * 59.99470 * 24 22 20 28 28 C 1.46924 * 120.62614 * 171.54799 * 14 12 10 29 29 H 1.09002 * 109.46965 * 289.12492 * 1 2 3 30 30 H 1.08990 * 109.47564 * 49.13444 * 1 2 3 31 31 H 1.09006 * 109.47191 * 169.13244 * 1 2 3 32 32 H 1.08999 * 110.79061 * 152.76464 * 5 4 2 33 33 H 1.09002 * 110.78260 * 276.03146 * 5 4 2 34 34 H 1.09003 * 108.86944 * 214.65446 * 6 5 4 35 35 H 1.09000 * 108.86753 * 96.29443 * 6 5 4 36 36 H 0.96995 * 119.99832 * 272.31890 * 9 7 6 37 37 H 1.08992 * 109.59048 * 113.82063 * 15 14 12 38 38 H 1.09003 * 109.70222 * 353.46180 * 15 14 12 39 39 H 1.09003 * 109.49566 * 185.41288 * 16 15 14 40 40 H 1.08995 * 109.52714 * 65.32965 * 16 15 14 41 41 H 1.09005 * 109.45948 * 301.35026 * 17 16 15 42 42 H 1.08998 * 109.44934 * 181.38315 * 17 16 15 43 43 H 0.96993 * 120.00317 * 356.70633 * 23 22 20 44 44 H 1.08999 * 109.59049 * 6.60589 * 28 14 12 45 45 H 1.09002 * 109.58977 * 246.17505 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1829 -0.9498 -1.4338 5 6 3.7614 -1.4092 -0.6085 6 6 3.3326 -1.5847 0.8629 7 6 2.0775 -0.7921 1.2051 8 1 2.3122 -0.0939 2.0086 9 7 1.0439 -1.7196 1.6715 10 6 0.9182 -1.9822 2.9875 11 8 1.6609 -1.4500 3.7860 12 6 -0.1359 -2.9288 3.4632 13 8 -0.9555 -3.3665 2.6826 14 7 -0.1763 -3.2964 4.7592 15 6 0.9101 -2.9263 5.6765 16 6 1.4277 -4.1935 6.3644 17 6 0.2587 -4.9189 7.0349 18 6 -0.7652 -5.3291 5.9740 19 1 -0.2869 -5.9741 5.2370 20 6 -1.9002 -6.0715 6.6310 21 1 -2.1403 -5.8838 7.6671 22 6 -2.6320 -6.9906 5.9094 23 7 -2.3602 -7.1961 4.6392 24 14 -4.0097 -7.9437 6.7358 25 1 -4.6371 -8.8610 5.7509 26 1 -3.4570 -8.7330 7.8659 27 1 -5.0305 -6.9944 7.2477 28 6 -1.3076 -4.0748 5.2816 29 1 -0.3633 0.3367 0.9710 30 1 -0.3634 0.6723 -0.7771 31 1 -0.3634 -1.0093 -0.1938 32 1 4.1512 -2.3438 -1.0120 33 1 4.4964 -0.6105 -0.7076 34 1 4.1457 -1.2537 1.5089 35 1 3.1444 -2.6417 1.0515 36 1 0.4500 -2.1448 1.0332 37 1 0.5340 -2.2309 6.4268 38 1 1.7198 -2.4576 5.1171 39 1 2.1676 -3.9222 7.1175 40 1 1.8858 -4.8489 5.6238 41 1 -0.2142 -4.2545 7.7582 42 1 0.6283 -5.8079 7.5459 43 1 -1.6773 -6.6676 4.1976 44 1 -1.9619 -4.3652 4.4597 45 1 -1.8647 -3.4730 5.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328215098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:40 Heat of formation + Delta-G solvation = -63.955873 kcal Electronic energy + Delta-G solvation = -26551.235265 eV Core-core repulsion = 22887.957067 eV Total energy + Delta-G solvation = -3663.278198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85979 -38.96781 -37.27616 -36.97483 -33.67882 -32.94108 -32.18524 -31.80254 -29.81856 -27.27315 -25.69468 -24.68121 -23.83965 -23.06527 -21.93932 -20.58590 -20.34331 -19.21237 -17.61100 -17.27658 -16.81131 -16.57567 -15.93374 -15.65944 -15.11128 -14.93896 -14.54839 -14.21544 -14.04840 -13.81586 -13.73666 -13.62744 -13.38441 -13.32067 -12.90744 -12.60482 -12.37834 -12.28693 -11.77289 -11.73798 -11.48706 -11.36374 -11.28564 -11.18002 -10.83981 -10.57790 -10.33337 -10.21638 -10.13443 -10.03874 -9.52092 -9.30911 -9.07167 -8.59771 -8.43703 -8.08188 -8.01865 -6.38654 -4.12971 1.41751 1.56925 1.89846 2.45572 3.39835 3.43087 3.44108 3.63485 3.69789 3.87487 4.34352 4.46273 4.47437 4.51683 4.60145 4.65228 4.86288 5.03050 5.27357 5.31762 5.33130 5.41572 5.43538 5.49305 5.51161 5.62333 5.72805 5.81562 5.94240 6.06832 6.20874 6.28398 6.37752 6.51246 6.61249 6.72277 6.80078 6.86249 7.05140 7.32103 7.48571 7.70058 7.85335 8.13791 8.32503 8.39573 8.82992 9.60682 10.99532 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.003016 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.215311 B = 9281.649030 C = 9950.019010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 H 0.109 0.891 4 S -0.290 6.290 5 C -0.065 4.065 6 C -0.141 4.141 7 C 0.140 3.860 8 H 0.109 0.891 9 N -0.696 5.696 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.494 3.506 13 O -0.524 6.524 14 N -0.570 5.570 15 C 0.073 3.927 16 C -0.136 4.136 17 C -0.106 4.106 18 C 0.023 3.977 19 H 0.035 0.965 20 C -0.598 4.598 21 H 0.051 0.949 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 1.068 2.932 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.287 1.287 28 C 0.111 3.889 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.417 0.583 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.273 0.727 44 H 0.086 0.914 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.046 15.323 -7.712 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 H 0.128 0.872 4 S -0.064 6.064 5 C -0.214 4.214 6 C -0.181 4.181 7 C 0.033 3.967 8 H 0.127 0.873 9 N -0.351 5.351 10 C 0.295 3.705 11 O -0.394 6.394 12 C 0.275 3.725 13 O -0.402 6.402 14 N -0.302 5.302 15 C -0.049 4.049 16 C -0.174 4.174 17 C -0.144 4.144 18 C 0.004 3.996 19 H 0.054 0.946 20 C -0.637 4.637 21 H 0.070 0.930 22 C -0.184 4.184 23 N -0.537 5.537 24 Si 0.896 3.104 25 H -0.207 1.207 26 H -0.214 1.214 27 H -0.214 1.214 28 C -0.009 4.009 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.533 14.027 -8.928 19.683 hybrid contribution 1.411 1.265 1.163 2.223 sum 11.944 15.292 -7.766 20.900 Atomic orbital electron populations 1.21683 0.90908 1.03694 1.03211 1.24233 1.00344 1.00772 0.92012 0.87247 1.88241 1.22822 1.69024 1.26316 1.24135 0.96182 1.05266 0.95771 1.22512 0.97422 1.02851 0.95268 1.21607 0.86831 0.91155 0.97129 0.87285 1.46093 1.35736 1.45736 1.07562 1.20693 0.84401 0.82567 0.82820 1.90473 1.45005 1.51016 1.52865 1.19862 0.85736 0.83033 0.83872 1.90774 1.41076 1.54781 1.53536 1.48446 1.23116 1.51177 1.07423 1.22706 0.91273 0.97036 0.93857 1.21998 0.98787 0.96993 0.99598 1.21592 0.95291 0.98774 0.98716 1.19167 0.94711 0.91829 0.93900 0.94643 1.21849 1.17296 1.25664 0.98858 0.93020 1.25886 1.00342 0.96394 0.95784 1.70779 1.31924 1.40496 1.10520 0.83563 0.75525 0.76216 0.75118 1.20748 1.21438 1.21384 1.22614 0.86779 0.93026 0.98532 0.90628 0.91265 0.90903 0.87467 0.88957 0.89505 0.89468 0.74375 0.92001 0.85502 0.91874 0.92433 0.93259 0.92675 0.91533 0.89543 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.36 37.16 0.31 -0.83 16 2 C -0.04 -0.36 3.88 -26.08 -0.10 -0.46 16 3 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 4 S -0.29 -2.73 22.72 -107.50 -2.44 -5.18 16 5 C -0.07 -0.47 7.46 37.82 0.28 -0.18 16 6 C -0.14 -1.14 6.11 -26.41 -0.16 -1.30 16 7 C 0.14 1.27 2.95 -67.61 -0.20 1.07 16 8 H 0.11 1.01 7.26 -51.93 -0.38 0.63 16 9 N -0.70 -8.18 3.84 -53.92 -0.21 -8.38 16 10 C 0.51 7.62 7.74 -11.58 -0.09 7.53 16 11 O -0.52 -7.88 12.68 5.50 0.07 -7.81 16 12 C 0.49 9.26 7.73 -11.58 -0.09 9.17 16 13 O -0.52 -11.22 15.93 5.50 0.09 -11.14 16 14 N -0.57 -11.10 2.97 -173.28 -0.51 -11.61 16 15 C 0.07 1.22 5.98 -3.71 -0.02 1.20 16 16 C -0.14 -2.30 6.08 -26.61 -0.16 -2.46 16 17 C -0.11 -2.15 5.15 -26.69 -0.14 -2.29 16 18 C 0.02 0.57 1.91 -91.65 -0.18 0.39 16 19 H 0.04 0.96 6.81 -51.93 -0.35 0.61 16 20 C -0.60 -16.24 8.32 -34.44 -0.29 -16.52 16 21 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 22 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 23 N -0.90 -27.13 13.60 55.43 0.75 -26.37 16 24 Si 1.07 24.81 29.90 -169.99 -5.08 19.72 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.11 2.53 5.67 -3.71 -0.02 2.51 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.69 6.73 -51.93 -0.35 0.34 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.84 7.79 -51.93 -0.40 0.43 16 36 H 0.42 5.04 6.48 -40.82 -0.26 4.78 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.13 2.03 4.31 -54.82 -0.24 1.79 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.27 8.31 6.47 -40.82 -0.26 8.05 16 44 H 0.09 2.23 6.78 -51.93 -0.35 1.88 16 45 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -30.99 363.85 -9.68 -40.67 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.88 Total: 6.27 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.95 Total: -1.67 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.03 Total: -46.37 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.16 Total: -18.94 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.44 Total: -5.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.99 -9.68 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328215098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.284 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds