Wall clock time and date at job start Tue Mar 31 2020 14:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.69931 * 2 1 4 4 S 1.83961 * 110.78767 * 236.47986 * 2 1 3 5 5 C 1.83956 * 94.80834 * 207.23237 * 4 2 1 6 6 C 1.54261 * 102.58033 * 34.48999 * 5 4 2 7 7 C 1.52332 * 112.58730 * 335.47391 * 6 5 4 8 8 H 1.09007 * 108.75303 * 239.25609 * 7 6 5 9 9 N 1.46503 * 108.86876 * 120.81896 * 7 6 5 10 10 C 1.34784 * 119.99897 * 92.31538 * 9 7 6 11 11 O 1.21349 * 119.99821 * 0.02562 * 10 9 7 12 12 C 1.49449 * 119.99574 * 180.02562 * 10 9 7 13 13 O 1.21345 * 120.00549 * 353.28129 * 12 10 9 14 14 N 1.34781 * 119.99463 * 173.28261 * 12 10 9 15 15 C 1.46920 * 120.63411 * 351.55048 * 14 12 10 16 16 C 1.53194 * 108.77422 * 233.61160 * 15 14 12 17 17 C 1.53041 * 109.31177 * 305.36120 * 16 15 14 18 18 C 1.53039 * 109.53721 * 61.36555 * 17 16 15 19 19 H 1.08999 * 109.49896 * 58.62226 * 18 17 16 20 20 C 1.50701 * 109.49757 * 178.68566 * 18 17 16 21 21 H 1.08000 * 120.00175 * 26.62717 * 20 18 17 22 22 C 1.37873 * 119.99876 * 206.63750 * 20 18 17 23 23 N 1.31512 * 120.00096 * 358.38113 * 22 20 18 24 24 Si 1.86800 * 119.99933 * 178.38665 * 22 20 18 25 25 H 1.48501 * 109.47117 * 179.97438 * 24 22 20 26 26 H 1.48504 * 109.47340 * 299.99534 * 24 22 20 27 27 H 1.48500 * 109.47223 * 59.99470 * 24 22 20 28 28 C 1.46924 * 120.62614 * 171.54799 * 14 12 10 29 29 H 1.09002 * 109.46965 * 289.12492 * 1 2 3 30 30 H 1.08990 * 109.47564 * 49.13444 * 1 2 3 31 31 H 1.09006 * 109.47191 * 169.13244 * 1 2 3 32 32 H 1.08999 * 110.79061 * 152.76464 * 5 4 2 33 33 H 1.09002 * 110.78260 * 276.03146 * 5 4 2 34 34 H 1.09003 * 108.86944 * 214.65446 * 6 5 4 35 35 H 1.09000 * 108.86753 * 96.29443 * 6 5 4 36 36 H 0.96995 * 119.99832 * 272.31890 * 9 7 6 37 37 H 1.08992 * 109.59048 * 113.82063 * 15 14 12 38 38 H 1.09003 * 109.70222 * 353.46180 * 15 14 12 39 39 H 1.09003 * 109.49566 * 185.41288 * 16 15 14 40 40 H 1.08995 * 109.52714 * 65.32965 * 16 15 14 41 41 H 1.09005 * 109.45948 * 301.35026 * 17 16 15 42 42 H 1.08998 * 109.44934 * 181.38315 * 17 16 15 43 43 H 0.96993 * 120.00317 * 356.70633 * 23 22 20 44 44 H 1.08999 * 109.59049 * 6.60589 * 28 14 12 45 45 H 1.09002 * 109.58977 * 246.17505 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1829 -0.9498 -1.4338 5 6 3.7614 -1.4092 -0.6085 6 6 3.3326 -1.5847 0.8629 7 6 2.0775 -0.7921 1.2051 8 1 2.3122 -0.0939 2.0086 9 7 1.0439 -1.7196 1.6715 10 6 0.9182 -1.9822 2.9875 11 8 1.6609 -1.4500 3.7860 12 6 -0.1359 -2.9288 3.4632 13 8 -0.9555 -3.3665 2.6826 14 7 -0.1763 -3.2964 4.7592 15 6 0.9101 -2.9263 5.6765 16 6 1.4277 -4.1935 6.3644 17 6 0.2587 -4.9189 7.0349 18 6 -0.7652 -5.3291 5.9740 19 1 -0.2869 -5.9741 5.2370 20 6 -1.9002 -6.0715 6.6310 21 1 -2.1403 -5.8838 7.6671 22 6 -2.6320 -6.9906 5.9094 23 7 -2.3602 -7.1961 4.6392 24 14 -4.0097 -7.9437 6.7358 25 1 -4.6371 -8.8610 5.7509 26 1 -3.4570 -8.7330 7.8659 27 1 -5.0305 -6.9944 7.2477 28 6 -1.3076 -4.0748 5.2816 29 1 -0.3633 0.3367 0.9710 30 1 -0.3634 0.6723 -0.7771 31 1 -0.3634 -1.0093 -0.1938 32 1 4.1512 -2.3438 -1.0120 33 1 4.4964 -0.6105 -0.7076 34 1 4.1457 -1.2537 1.5089 35 1 3.1444 -2.6417 1.0515 36 1 0.4500 -2.1448 1.0332 37 1 0.5340 -2.2309 6.4268 38 1 1.7198 -2.4576 5.1171 39 1 2.1676 -3.9222 7.1175 40 1 1.8858 -4.8489 5.6238 41 1 -0.2142 -4.2545 7.7582 42 1 0.6283 -5.8079 7.5459 43 1 -1.6773 -6.6676 4.1976 44 1 -1.9619 -4.3652 4.4597 45 1 -1.8647 -3.4730 5.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328215098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:39 Heat of formation + Delta-G solvation = -82.889487 kcal Electronic energy + Delta-G solvation = -26552.056288 eV Core-core repulsion = 22887.957067 eV Total energy + Delta-G solvation = -3664.099221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16156 -40.29086 -38.69829 -38.18637 -35.55121 -33.90758 -33.45554 -32.89925 -31.61729 -28.28605 -27.06237 -26.54623 -24.64040 -24.31302 -23.63973 -22.00683 -21.19504 -20.71020 -19.14737 -18.61449 -18.20327 -17.67696 -17.17093 -16.94978 -16.32931 -15.95345 -15.69181 -15.65529 -15.46146 -15.28396 -15.02887 -14.95381 -14.64272 -14.46712 -14.17075 -13.91329 -13.50898 -13.28991 -13.21681 -13.06568 -12.87106 -12.65151 -12.39339 -12.20295 -12.17146 -11.96037 -11.91319 -11.88972 -11.72988 -11.18692 -10.91923 -10.79744 -10.59466 -10.52863 -10.16983 -9.70312 -8.80558 -8.62771 -6.36959 0.23106 0.76329 1.17987 1.28331 1.53465 1.61320 1.79996 2.01837 2.39281 2.58203 3.12531 3.19007 3.23394 3.66836 3.81485 3.90304 3.99871 4.05396 4.06733 4.16078 4.21871 4.36501 4.41505 4.49764 4.63527 4.65968 4.68417 4.72472 4.78075 4.79669 4.87509 4.92739 4.99835 5.03016 5.12037 5.13308 5.22735 5.35303 5.49935 5.59437 5.85306 6.06455 6.18421 6.25503 6.55434 6.62728 6.83807 7.45665 8.74739 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.003016 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.215311 B = 9281.649030 C = 9950.019010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 H 0.134 0.866 4 S -0.342 6.342 5 C -0.050 4.050 6 C -0.138 4.138 7 C 0.138 3.862 8 H 0.118 0.882 9 N -0.682 5.682 10 C 0.526 3.474 11 O -0.516 6.516 12 C 0.485 3.515 13 O -0.560 6.560 14 N -0.576 5.576 15 C 0.074 3.926 16 C -0.127 4.127 17 C -0.100 4.100 18 C 0.020 3.980 19 H -0.003 1.003 20 C -0.606 4.606 21 H 0.054 0.946 22 C -0.032 4.032 23 N -0.934 5.934 24 Si 1.114 2.886 25 H -0.289 1.289 26 H -0.268 1.268 27 H -0.269 1.269 28 C 0.127 3.873 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.416 0.584 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.255 0.745 44 H 0.045 0.955 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 17.297 -6.621 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 H 0.152 0.848 4 S -0.116 6.116 5 C -0.198 4.198 6 C -0.178 4.178 7 C 0.033 3.967 8 H 0.135 0.865 9 N -0.335 5.335 10 C 0.307 3.693 11 O -0.394 6.394 12 C 0.268 3.732 13 O -0.440 6.440 14 N -0.308 5.308 15 C -0.046 4.046 16 C -0.165 4.165 17 C -0.138 4.138 18 C 0.000 4.000 19 H 0.015 0.985 20 C -0.644 4.644 21 H 0.073 0.927 22 C -0.231 4.231 23 N -0.571 5.571 24 Si 0.935 3.065 25 H -0.215 1.215 26 H -0.193 1.193 27 H -0.194 1.194 28 C 0.005 3.995 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.336 16.042 -7.836 21.701 hybrid contribution 0.908 0.691 0.786 1.386 sum 13.244 16.733 -7.050 22.474 Atomic orbital electron populations 1.21673 0.91417 1.02961 1.03480 1.24247 0.99818 1.01421 0.90326 0.84794 1.88482 1.25252 1.69870 1.28042 1.24198 0.94916 1.06317 0.94326 1.22477 0.97356 1.01629 0.96349 1.21898 0.86293 0.90760 0.97774 0.86460 1.46106 1.35873 1.45357 1.06189 1.19761 0.83534 0.82103 0.83898 1.90454 1.44762 1.51094 1.53055 1.20628 0.86260 0.83081 0.83240 1.90753 1.42736 1.56106 1.54389 1.48436 1.22983 1.50905 1.08426 1.22944 0.90670 0.97160 0.93859 1.21959 0.98065 0.96432 1.00085 1.21483 0.95492 0.99223 0.97630 1.19128 0.94970 0.91680 0.94182 0.98486 1.22261 1.17575 1.25574 0.98978 0.92722 1.27334 1.02446 0.97703 0.95569 1.70913 1.32732 1.41533 1.11872 0.82981 0.73340 0.75487 0.74645 1.21474 1.19303 1.19395 1.22013 0.87421 0.93081 0.97009 0.90729 0.90239 0.92534 0.86988 0.86669 0.87656 0.91116 0.74573 0.90393 0.83996 0.87882 0.93518 0.92235 0.93192 0.93432 0.93589 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.36 71.98 0.60 -1.55 16 2 C -0.03 -0.41 3.88 31.02 0.12 -0.29 16 3 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 4 S -0.34 -6.01 22.72 -56.49 -1.28 -7.29 16 5 C -0.05 -0.59 7.46 72.41 0.54 -0.05 16 6 C -0.14 -1.91 6.11 30.80 0.19 -1.72 16 7 C 0.14 2.19 2.95 45.19 0.13 2.33 16 8 H 0.12 1.78 7.26 -2.38 -0.02 1.76 16 9 N -0.68 -15.38 3.84 -442.87 -1.70 -17.08 16 10 C 0.53 15.09 7.74 87.27 0.68 15.77 16 11 O -0.52 -14.45 12.68 -3.24 -0.04 -14.49 16 12 C 0.49 18.49 7.73 87.27 0.67 19.16 16 13 O -0.56 -25.18 15.93 -3.23 -0.05 -25.24 16 14 N -0.58 -22.55 2.97 -820.50 -2.44 -24.99 16 15 C 0.07 2.32 5.98 86.36 0.52 2.84 16 16 C -0.13 -4.05 6.08 30.67 0.19 -3.87 16 17 C -0.10 -3.99 5.15 30.62 0.16 -3.83 16 18 C 0.02 1.00 1.91 -11.46 -0.02 0.97 16 19 H 0.00 -0.18 6.81 -2.39 -0.02 -0.20 16 20 C -0.61 -33.49 8.32 25.60 0.21 -33.28 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C -0.03 -1.83 5.46 84.65 0.46 -1.37 16 23 N -0.93 -58.70 13.60 21.45 0.29 -58.41 16 24 Si 1.11 50.32 29.90 68.60 2.05 52.38 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.13 5.98 5.67 86.36 0.49 6.47 16 29 H 0.07 1.19 8.09 -2.39 -0.02 1.18 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.08 6.73 -2.38 -0.02 1.06 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 36 H 0.42 10.09 6.48 -92.71 -0.60 9.49 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.14 4.13 4.31 -48.19 -0.21 3.93 16 39 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.26 16.59 6.47 -92.71 -0.60 15.99 16 44 H 0.05 2.52 6.78 -2.39 -0.02 2.51 16 45 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -70.48 363.85 2.14 -68.34 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.37 Total: 25.20 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 4.94 Total: 1.58 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -3.85 Total: -100.48 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.09 Total: -39.73 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.38 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.28 Total: -7.29 kcal Total: -70.48 2.14 -68.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328215098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.545 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds