Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.30075 * 2 1 4 4 C 1.53713 * 110.33861 * 237.83846 * 2 1 3 5 5 C 1.52938 * 112.48520 * 243.84393 * 4 2 1 6 6 H 1.08998 * 109.60403 * 89.64808 * 5 4 2 7 7 N 1.46499 * 109.60220 * 209.96488 * 5 4 2 8 8 C 1.34778 * 120.00139 * 205.10048 * 7 5 4 9 9 O 1.21346 * 120.00023 * 0.27673 * 8 7 5 10 10 C 1.49447 * 119.99874 * 180.27837 * 8 7 5 11 11 O 1.21353 * 120.00508 * 6.39999 * 10 8 7 12 12 N 1.34776 * 120.00240 * 186.40488 * 10 8 7 13 13 C 1.46931 * 120.62742 * 7.07816 * 12 10 8 14 14 C 1.53192 * 108.77519 * 233.59000 * 13 12 10 15 15 C 1.53036 * 109.31246 * 305.36436 * 14 13 12 16 16 C 1.53038 * 109.54007 * 61.37158 * 15 14 13 17 17 H 1.08999 * 109.49741 * 58.61020 * 16 15 14 18 18 C 1.50697 * 109.49856 * 178.68343 * 16 15 14 19 19 H 1.07995 * 120.00215 * 359.97438 * 18 16 15 20 20 C 1.37887 * 119.99797 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99479 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 119.99753 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47205 * 59.99906 * 22 20 18 24 24 H 1.48500 * 109.46736 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47323 * 299.99591 * 22 20 18 26 26 C 1.46930 * 120.63458 * 186.80573 * 12 10 8 27 27 C 1.55153 * 108.81359 * 329.80539 * 5 4 2 28 28 S 1.83391 * 110.43397 * 122.23439 * 2 1 3 29 29 H 1.09003 * 109.46868 * 182.17216 * 1 2 3 30 30 H 1.09009 * 109.46778 * 302.16345 * 1 2 3 31 31 H 1.08995 * 109.47479 * 62.16187 * 1 2 3 32 32 H 1.08998 * 108.88511 * 123.05194 * 4 2 1 33 33 H 1.08995 * 108.88418 * 4.63176 * 4 2 1 34 34 H 0.97001 * 119.99929 * 25.38347 * 7 5 4 35 35 H 1.09001 * 109.58753 * 353.37838 * 13 12 10 36 36 H 1.08999 * 109.58267 * 113.66006 * 13 12 10 37 37 H 1.08992 * 109.49837 * 65.32205 * 14 13 12 38 38 H 1.09000 * 109.49095 * 185.38225 * 14 13 12 39 39 H 1.09007 * 109.45798 * 181.38708 * 15 14 13 40 40 H 1.09005 * 109.46327 * 301.35673 * 15 14 13 41 41 H 0.97010 * 119.99401 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.58779 * 246.19674 * 26 12 10 43 43 H 1.08996 * 109.58428 * 6.62474 * 26 12 10 44 44 H 1.09002 * 111.13519 * 159.44373 * 27 5 4 45 45 H 1.08994 * 111.13323 * 283.62256 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0224 0.0000 4 6 2.0643 -0.7672 -1.2201 5 6 2.8516 -2.0177 -0.8259 6 1 2.1747 -2.8691 -0.7558 7 7 3.8798 -2.2891 -1.8336 8 6 4.3455 -3.5427 -2.0006 9 8 3.9096 -4.4476 -1.3196 10 6 5.3988 -3.8184 -3.0243 11 8 5.9179 -2.8997 -3.6236 12 7 5.7723 -5.0875 -3.2821 13 6 5.0497 -6.2171 -2.6816 14 6 6.0566 -7.1203 -1.9625 15 6 7.1594 -7.5289 -2.9418 16 6 7.8957 -6.2805 -3.4334 17 1 8.3184 -5.7483 -2.5813 18 6 9.0022 -6.6863 -4.3725 19 1 9.1648 -7.7302 -4.5964 20 6 9.8077 -5.7247 -4.9452 21 7 9.6098 -4.4536 -4.6720 22 14 11.1796 -6.2278 -6.1087 23 1 10.6032 -6.9512 -7.2704 24 1 11.8935 -5.0160 -6.5854 25 1 12.1326 -7.1159 -5.3958 26 6 6.9061 -5.3678 -4.1736 27 6 3.5239 -1.7724 0.5507 28 16 2.1703 -0.9166 1.4536 29 1 -0.3633 -1.0270 0.0390 30 1 -0.3633 0.5471 0.8700 31 1 -0.3634 0.4799 -0.9087 32 1 2.7143 -0.1075 -1.7948 33 1 1.2230 -1.0630 -1.8469 34 1 4.2283 -1.5657 -2.3779 35 1 4.3176 -5.8435 -1.9656 36 1 4.5413 -6.7823 -3.4627 37 1 6.4962 -6.5800 -1.1243 38 1 5.5479 -8.0113 -1.5944 39 1 7.8640 -8.1916 -2.4393 40 1 6.7164 -8.0474 -3.7921 41 1 10.1763 -3.7770 -5.0752 42 1 6.5481 -5.8667 -5.0742 43 1 7.3992 -4.4337 -4.4423 44 1 3.7825 -2.7139 1.0352 45 1 4.3991 -1.1303 0.4518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329093944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -62.634309 kcal Electronic energy + Delta-G solvation = -26163.808666 eV Core-core repulsion = 22500.587775 eV Total energy + Delta-G solvation = -3663.220891 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69635 -38.68796 -37.20119 -36.80935 -34.18552 -33.23139 -31.77327 -30.94238 -29.75874 -27.13739 -26.12790 -25.04228 -23.98508 -22.35230 -21.82405 -20.86454 -20.27642 -18.84407 -17.50251 -17.34525 -16.59916 -16.05649 -15.82766 -15.51188 -15.04500 -14.82574 -14.60103 -14.57767 -14.05447 -13.91741 -13.75660 -13.45359 -13.30562 -12.89273 -12.62520 -12.61439 -12.16867 -12.12966 -11.91990 -11.73730 -11.67111 -11.43930 -11.22405 -10.98798 -10.74717 -10.50717 -10.40560 -10.30887 -10.10741 -9.92292 -9.44756 -9.25315 -9.14399 -8.58264 -8.45185 -8.03627 -7.87297 -6.04742 -4.12712 1.42078 1.65274 1.93056 2.62088 3.29746 3.35410 3.37076 3.53468 3.85039 4.08988 4.28322 4.31240 4.39469 4.49067 4.64731 4.77706 4.91541 5.07473 5.22982 5.25975 5.32882 5.40723 5.47559 5.54730 5.62954 5.66141 5.73269 5.83965 6.00755 6.21950 6.36276 6.54578 6.56775 6.70773 6.82586 6.96188 6.98278 7.12336 7.13726 7.55085 7.78656 7.89092 7.92065 8.10396 8.31640 8.51170 8.91031 9.52808 11.00985 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.002708 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.491163 B =10338.599537 C =10897.887280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 H 0.100 0.900 4 C -0.137 4.137 5 C 0.143 3.857 6 H 0.109 0.891 7 N -0.699 5.699 8 C 0.515 3.485 9 O -0.509 6.509 10 C 0.494 3.506 11 O -0.524 6.524 12 N -0.565 5.565 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.114 4.114 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.108 3.892 27 C -0.082 4.082 28 S -0.281 6.281 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.414 0.586 35 H 0.143 0.857 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.049 0.951 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.730 7.639 7.843 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 H 0.119 0.881 4 C -0.177 4.177 5 C 0.036 3.964 6 H 0.127 0.873 7 N -0.353 5.353 8 C 0.298 3.702 9 O -0.386 6.386 10 C 0.275 3.725 11 O -0.402 6.402 12 N -0.297 5.297 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.011 4.011 27 C -0.232 4.232 28 S -0.055 6.055 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.159 0.841 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.132 0.868 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.023 7.625 9.110 21.586 hybrid contribution 1.482 0.058 -2.054 2.534 sum -16.541 7.683 7.056 19.555 Atomic orbital electron populations 1.21846 0.91731 1.03396 1.02522 1.23581 0.99512 1.01009 0.92648 0.88126 1.22291 1.01296 0.95964 0.98101 1.21996 0.89256 0.99323 0.85783 0.87261 1.45950 1.40425 1.10219 1.38716 1.20890 0.82488 0.82740 0.84077 1.90318 1.58782 1.42227 1.47254 1.19696 0.84085 0.84680 0.84020 1.90764 1.55627 1.43522 1.50256 1.48465 1.31730 1.04008 1.45484 1.23082 0.96587 0.88238 0.99296 1.21849 0.97368 0.98411 0.98905 1.21673 0.96359 0.99751 0.97359 1.19043 0.92112 0.90742 0.95865 0.95220 1.21064 1.13998 0.93190 1.27578 0.92281 1.25062 0.97416 0.95002 0.96578 1.69868 1.39090 0.99710 1.43408 0.86619 0.82096 0.77886 0.81193 1.20215 1.21244 1.20242 1.22597 0.83504 1.04542 0.90486 1.24843 0.98422 1.03721 0.96178 1.87982 1.39970 1.58291 1.19262 0.91200 0.91782 0.91202 0.89859 0.89015 0.74847 0.84065 0.92660 0.92337 0.92244 0.93045 0.93226 0.92575 0.93297 0.85949 0.86756 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.05 37.16 0.34 -0.44 16 2 C -0.04 -0.27 3.91 -26.36 -0.10 -0.37 16 3 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 4 C -0.14 -0.94 5.72 -26.39 -0.15 -1.09 16 5 C 0.14 1.35 2.84 -66.82 -0.19 1.16 16 6 H 0.11 1.13 7.57 -51.93 -0.39 0.74 16 7 N -0.70 -8.12 5.09 -53.16 -0.27 -8.39 16 8 C 0.52 7.92 7.76 -11.59 -0.09 7.83 16 9 O -0.51 -8.15 12.76 5.50 0.07 -8.08 16 10 C 0.49 9.60 7.74 -11.59 -0.09 9.51 16 11 O -0.52 -11.51 15.94 5.49 0.09 -11.42 16 12 N -0.57 -11.52 2.97 -173.00 -0.51 -12.03 16 13 C 0.05 0.86 6.27 -3.71 -0.02 0.84 16 14 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 15 C -0.11 -2.32 5.10 -26.69 -0.14 -2.46 16 16 C 0.04 1.02 2.26 -91.43 -0.21 0.82 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -13.97 8.56 -34.44 -0.29 -14.27 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.24 11.41 55.43 0.63 -24.60 16 22 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.11 2.60 5.41 -3.48 -0.02 2.58 16 27 C -0.08 -0.82 7.12 38.30 0.27 -0.55 16 28 S -0.28 -2.74 22.67 -107.50 -2.44 -5.18 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.50 7.67 -51.93 -0.40 0.11 16 33 H 0.09 0.55 7.62 -51.93 -0.40 0.15 16 34 H 0.41 4.47 7.79 -40.82 -0.32 4.16 16 35 H 0.14 2.36 3.78 -56.76 -0.21 2.15 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.12 3.36 5.20 -51.93 -0.27 3.09 16 44 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -30.11 366.35 -9.91 -40.02 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.03 Total: 5.37 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.95 Total: 2.77 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.15 Total: -45.02 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.44 Total: -5.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.11 -9.91 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329093944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.617 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds