Wall clock time and date at job start Tue Mar 31 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.30075 * 2 1 4 4 C 1.53713 * 110.33861 * 237.83846 * 2 1 3 5 5 C 1.52938 * 112.48520 * 243.84393 * 4 2 1 6 6 H 1.08998 * 109.60403 * 89.64808 * 5 4 2 7 7 N 1.46499 * 109.60220 * 209.96488 * 5 4 2 8 8 C 1.34778 * 120.00139 * 205.10048 * 7 5 4 9 9 O 1.21346 * 120.00023 * 0.27673 * 8 7 5 10 10 C 1.49447 * 119.99874 * 180.27837 * 8 7 5 11 11 O 1.21353 * 120.00508 * 6.39999 * 10 8 7 12 12 N 1.34776 * 120.00240 * 186.40488 * 10 8 7 13 13 C 1.46931 * 120.62742 * 7.07816 * 12 10 8 14 14 C 1.53192 * 108.77519 * 233.59000 * 13 12 10 15 15 C 1.53036 * 109.31246 * 305.36436 * 14 13 12 16 16 C 1.53038 * 109.54007 * 61.37158 * 15 14 13 17 17 H 1.08999 * 109.49741 * 58.61020 * 16 15 14 18 18 C 1.50697 * 109.49856 * 178.68343 * 16 15 14 19 19 H 1.07995 * 120.00215 * 359.97438 * 18 16 15 20 20 C 1.37887 * 119.99797 * 180.02562 * 18 16 15 21 21 N 1.31515 * 119.99479 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 119.99753 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47205 * 59.99906 * 22 20 18 24 24 H 1.48500 * 109.46736 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47323 * 299.99591 * 22 20 18 26 26 C 1.46930 * 120.63458 * 186.80573 * 12 10 8 27 27 C 1.55153 * 108.81359 * 329.80539 * 5 4 2 28 28 S 1.83391 * 110.43397 * 122.23439 * 2 1 3 29 29 H 1.09003 * 109.46868 * 182.17216 * 1 2 3 30 30 H 1.09009 * 109.46778 * 302.16345 * 1 2 3 31 31 H 1.08995 * 109.47479 * 62.16187 * 1 2 3 32 32 H 1.08998 * 108.88511 * 123.05194 * 4 2 1 33 33 H 1.08995 * 108.88418 * 4.63176 * 4 2 1 34 34 H 0.97001 * 119.99929 * 25.38347 * 7 5 4 35 35 H 1.09001 * 109.58753 * 353.37838 * 13 12 10 36 36 H 1.08999 * 109.58267 * 113.66006 * 13 12 10 37 37 H 1.08992 * 109.49837 * 65.32205 * 14 13 12 38 38 H 1.09000 * 109.49095 * 185.38225 * 14 13 12 39 39 H 1.09007 * 109.45798 * 181.38708 * 15 14 13 40 40 H 1.09005 * 109.46327 * 301.35673 * 15 14 13 41 41 H 0.97010 * 119.99401 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.58779 * 246.19674 * 26 12 10 43 43 H 1.08996 * 109.58428 * 6.62474 * 26 12 10 44 44 H 1.09002 * 111.13519 * 159.44373 * 27 5 4 45 45 H 1.08994 * 111.13323 * 283.62256 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0224 0.0000 4 6 2.0643 -0.7672 -1.2201 5 6 2.8516 -2.0177 -0.8259 6 1 2.1747 -2.8691 -0.7558 7 7 3.8798 -2.2891 -1.8336 8 6 4.3455 -3.5427 -2.0006 9 8 3.9096 -4.4476 -1.3196 10 6 5.3988 -3.8184 -3.0243 11 8 5.9179 -2.8997 -3.6236 12 7 5.7723 -5.0875 -3.2821 13 6 5.0497 -6.2171 -2.6816 14 6 6.0566 -7.1203 -1.9625 15 6 7.1594 -7.5289 -2.9418 16 6 7.8957 -6.2805 -3.4334 17 1 8.3184 -5.7483 -2.5813 18 6 9.0022 -6.6863 -4.3725 19 1 9.1648 -7.7302 -4.5964 20 6 9.8077 -5.7247 -4.9452 21 7 9.6098 -4.4536 -4.6720 22 14 11.1796 -6.2278 -6.1087 23 1 10.6032 -6.9512 -7.2704 24 1 11.8935 -5.0160 -6.5854 25 1 12.1326 -7.1159 -5.3958 26 6 6.9061 -5.3678 -4.1736 27 6 3.5239 -1.7724 0.5507 28 16 2.1703 -0.9166 1.4536 29 1 -0.3633 -1.0270 0.0390 30 1 -0.3633 0.5471 0.8700 31 1 -0.3634 0.4799 -0.9087 32 1 2.7143 -0.1075 -1.7948 33 1 1.2230 -1.0630 -1.8469 34 1 4.2283 -1.5657 -2.3779 35 1 4.3176 -5.8435 -1.9656 36 1 4.5413 -6.7823 -3.4627 37 1 6.4962 -6.5800 -1.1243 38 1 5.5479 -8.0113 -1.5944 39 1 7.8640 -8.1916 -2.4393 40 1 6.7164 -8.0474 -3.7921 41 1 10.1763 -3.7770 -5.0752 42 1 6.5481 -5.8667 -5.0742 43 1 7.3992 -4.4337 -4.4423 44 1 3.7825 -2.7139 1.0352 45 1 4.3991 -1.1303 0.4518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329093944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:02 Heat of formation + Delta-G solvation = -81.311042 kcal Electronic energy + Delta-G solvation = -26164.618550 eV Core-core repulsion = 22500.587775 eV Total energy + Delta-G solvation = -3664.030775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04362 -40.05245 -38.55824 -38.04281 -35.38353 -34.78774 -33.46268 -31.78652 -31.55752 -27.86251 -27.63852 -26.84487 -25.10516 -23.59587 -23.35664 -21.79083 -21.52922 -20.42302 -18.95083 -18.34946 -18.21354 -17.62093 -17.01093 -16.79452 -16.52968 -15.93244 -15.92080 -15.57401 -15.41038 -15.11785 -14.88195 -14.62607 -14.53090 -14.44758 -14.14647 -13.83840 -13.47578 -13.29432 -13.07947 -12.86130 -12.82802 -12.53024 -12.34078 -12.30278 -12.28860 -12.18391 -11.86939 -11.72176 -11.62504 -11.17795 -11.12664 -10.98803 -10.55409 -10.44003 -10.01369 -9.55754 -8.80349 -8.12970 -6.29047 0.29556 0.67161 1.16971 1.40983 1.42477 1.45763 1.51474 2.11010 2.40867 2.54428 3.15205 3.26488 3.38496 3.58637 3.77659 3.86431 4.03735 4.14666 4.18588 4.32322 4.35271 4.46731 4.56384 4.60825 4.64668 4.72783 4.81194 4.82179 4.86819 4.96276 5.03693 5.05021 5.14496 5.23114 5.26260 5.30750 5.38087 5.50200 5.55975 5.82776 5.91917 5.94200 6.28829 6.42915 6.69443 6.81983 6.95584 7.40634 8.91057 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.002708 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.491163 B =10338.599537 C =10897.887280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 H 0.113 0.887 4 C -0.133 4.133 5 C 0.146 3.854 6 H 0.105 0.895 7 N -0.679 5.679 8 C 0.526 3.474 9 O -0.514 6.514 10 C 0.486 3.514 11 O -0.557 6.557 12 N -0.574 5.574 13 C 0.049 3.951 14 C -0.120 4.120 15 C -0.107 4.107 16 C 0.039 3.961 17 H -0.011 1.011 18 C -0.537 4.537 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.915 5.915 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.287 1.287 25 H -0.270 1.270 26 C 0.122 3.878 27 C -0.079 4.079 28 S -0.318 6.318 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.420 0.580 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.541 7.482 7.762 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 H 0.131 0.869 4 C -0.172 4.172 5 C 0.040 3.960 6 H 0.123 0.877 7 N -0.332 5.332 8 C 0.308 3.692 9 O -0.392 6.392 10 C 0.268 3.732 11 O -0.437 6.437 12 N -0.305 5.305 13 C -0.071 4.071 14 C -0.158 4.158 15 C -0.145 4.145 16 C 0.020 3.980 17 H 0.007 0.993 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.188 4.188 21 N -0.553 5.553 22 Si 0.784 3.216 23 H -0.192 1.192 24 H -0.213 1.213 25 H -0.195 1.195 26 C 0.000 4.000 27 C -0.229 4.229 28 S -0.091 6.091 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.259 0.741 35 H 0.173 0.827 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.871 7.472 9.056 23.081 hybrid contribution 2.007 0.173 -1.983 2.827 sum -17.864 7.645 7.074 20.679 Atomic orbital electron populations 1.21860 0.90570 1.03387 1.03519 1.23709 1.00299 1.00940 0.90504 0.86914 1.22281 1.01738 0.94831 0.98332 1.22178 0.88426 1.00673 0.84742 0.87673 1.45869 1.39960 1.08837 1.38553 1.19982 0.81916 0.84064 0.83266 1.90295 1.58884 1.42718 1.47281 1.20425 0.84583 0.83887 0.84271 1.90737 1.57009 1.44364 1.51561 1.48474 1.31169 1.05530 1.45327 1.23320 0.96397 0.87434 0.99933 1.21817 0.96579 0.99816 0.97633 1.21569 0.97008 0.97594 0.98341 1.18978 0.92412 0.92437 0.94153 0.99277 1.21461 1.14867 0.93367 1.27806 0.91970 1.25873 0.99815 0.94906 0.98183 1.70045 1.40003 1.00712 1.44555 0.85599 0.79197 0.77511 0.79304 1.19231 1.21272 1.19520 1.22035 0.84597 1.02335 0.91005 1.24744 0.98632 1.03166 0.96319 1.88145 1.40194 1.59047 1.21759 0.91646 0.91898 0.89113 0.88493 0.87320 0.74146 0.82735 0.91024 0.93574 0.88439 0.92904 0.92398 0.92930 0.93680 0.89746 0.88091 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.05 71.98 0.65 -0.51 16 2 C -0.03 -0.29 3.91 30.83 0.12 -0.17 16 3 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 4 C -0.13 -1.44 5.72 30.81 0.18 -1.27 16 5 C 0.15 2.50 2.84 45.71 0.13 2.63 16 6 H 0.11 1.98 7.57 -2.39 -0.02 1.96 16 7 N -0.68 -14.86 5.09 -440.47 -2.24 -17.10 16 8 C 0.53 15.76 7.76 87.27 0.68 16.43 16 9 O -0.51 -15.72 12.76 -3.23 -0.04 -15.76 16 10 C 0.49 19.10 7.74 87.27 0.68 19.77 16 11 O -0.56 -25.22 15.94 -3.26 -0.05 -25.27 16 12 N -0.57 -23.60 2.97 -819.62 -2.43 -26.03 16 13 C 0.05 1.65 6.27 86.36 0.54 2.19 16 14 C -0.12 -4.04 6.08 30.67 0.19 -3.85 16 15 C -0.11 -4.33 5.10 30.62 0.16 -4.17 16 16 C 0.04 2.00 2.26 -11.32 -0.03 1.97 16 17 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 18 C -0.54 -29.39 8.56 25.60 0.22 -29.18 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.01 0.66 5.30 84.66 0.45 1.11 16 21 N -0.91 -54.21 11.41 21.45 0.24 -53.96 16 22 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 26 C 0.12 6.03 5.41 86.51 0.47 6.50 16 27 C -0.08 -1.51 7.12 72.72 0.52 -1.00 16 28 S -0.32 -5.84 22.67 -56.49 -1.28 -7.12 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.85 7.67 -2.39 -0.02 0.84 16 33 H 0.11 0.89 7.62 -2.39 -0.02 0.88 16 34 H 0.42 8.51 7.79 -92.71 -0.72 7.79 16 35 H 0.16 4.86 3.78 -78.83 -0.30 4.56 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 42 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 4.87 5.20 -2.39 -0.01 4.86 16 44 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -67.69 366.35 1.16 -66.53 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.01 Total: 22.60 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.94 Total: 10.46 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -4.43 Total: -97.09 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.09 Total: -41.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -1.28 Total: -7.12 kcal Total: -67.69 1.16 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329093944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.782 kcal (2) G-P(sol) polarization free energy of solvation -67.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds