Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30555 * 2 1 4 4 C 1.53714 * 110.34076 * 237.82909 * 2 1 3 5 5 C 1.52937 * 112.48796 * 243.84615 * 4 2 1 6 6 H 1.09004 * 109.60717 * 89.64743 * 5 4 2 7 7 N 1.46500 * 109.60425 * 209.96429 * 5 4 2 8 8 C 1.34770 * 120.00494 * 204.99855 * 7 5 4 9 9 O 1.21352 * 119.99791 * 0.02562 * 8 7 5 10 10 C 1.49447 * 120.00085 * 180.02562 * 8 7 5 11 11 O 1.21352 * 120.00071 * 353.56228 * 10 8 7 12 12 N 1.34778 * 119.99923 * 173.56036 * 10 8 7 13 13 C 1.46923 * 120.63091 * 353.38949 * 12 10 8 14 14 C 1.53193 * 108.77791 * 126.11615 * 13 12 10 15 15 C 1.53044 * 109.31515 * 54.63380 * 14 13 12 16 16 C 1.53036 * 109.53459 * 298.63886 * 15 14 13 17 17 H 1.09006 * 109.50001 * 301.37624 * 16 15 14 18 18 C 1.50704 * 109.49794 * 181.31392 * 16 15 14 19 19 H 1.08003 * 119.99518 * 0.02562 * 18 16 15 20 20 C 1.37877 * 120.00371 * 179.97438 * 18 16 15 21 21 N 1.31517 * 120.00233 * 180.02562 * 20 18 16 22 22 Si 1.86799 * 119.99764 * 359.97438 * 20 18 16 23 23 H 1.48508 * 109.46787 * 90.00429 * 22 20 18 24 24 H 1.48499 * 109.47197 * 209.99866 * 22 20 18 25 25 H 1.48492 * 109.47461 * 330.00240 * 22 20 18 26 26 C 1.46928 * 120.63069 * 173.10368 * 12 10 8 27 27 C 1.55156 * 108.96445 * 329.89999 * 5 4 2 28 28 S 1.83400 * 110.43230 * 122.23152 * 2 1 3 29 29 H 1.08997 * 109.46997 * 182.17635 * 1 2 3 30 30 H 1.08999 * 109.46542 * 302.17191 * 1 2 3 31 31 H 1.08996 * 109.47039 * 62.16756 * 1 2 3 32 32 H 1.09000 * 108.88820 * 123.05101 * 4 2 1 33 33 H 1.08998 * 108.77088 * 4.56042 * 4 2 1 34 34 H 0.97001 * 119.99583 * 25.00309 * 7 5 4 35 35 H 1.09005 * 109.58811 * 245.90099 * 13 12 10 36 36 H 1.09003 * 109.58997 * 6.32390 * 13 12 10 37 37 H 1.09002 * 109.49660 * 174.58425 * 14 13 12 38 38 H 1.09000 * 109.49398 * 294.64906 * 14 13 12 39 39 H 1.09006 * 109.45745 * 58.65379 * 15 14 13 40 40 H 1.08993 * 109.46188 * 178.61299 * 15 14 13 41 41 H 0.96997 * 119.99891 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.58661 * 353.67411 * 26 12 10 43 43 H 1.09003 * 109.58351 * 114.09373 * 26 12 10 44 44 H 1.09000 * 111.13068 * 159.34885 * 27 5 4 45 45 H 1.08996 * 111.12672 * 283.52797 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0643 -0.7674 -1.2200 5 6 2.8517 -2.0178 -0.8257 6 1 2.1748 -2.8693 -0.7554 7 7 3.8799 -2.2894 -1.8333 8 6 4.3471 -3.5426 -1.9987 9 8 3.9157 -4.4463 -1.3132 10 6 5.3964 -3.8194 -3.0262 11 8 5.7438 -2.9428 -3.7901 12 7 5.9568 -5.0427 -3.1044 13 6 5.6546 -6.0703 -2.0988 14 6 5.1693 -7.3341 -2.8157 15 6 6.2102 -7.7582 -3.8545 16 6 6.3779 -6.6475 -4.8938 17 1 5.4188 -6.4490 -5.3723 18 6 7.3792 -7.0790 -5.9341 19 1 7.8489 -8.0489 -5.8618 20 6 7.6948 -6.2363 -6.9787 21 7 8.5683 -6.6132 -7.8869 22 14 6.8807 -4.5598 -7.1049 23 1 7.6976 -3.5567 -6.3756 24 1 6.7742 -4.1674 -8.5331 25 1 5.5232 -4.6224 -6.5062 26 6 6.8769 -5.3758 -4.2005 27 6 3.5236 -1.7770 0.5520 28 16 2.1703 -0.9166 1.4538 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3632 0.5472 0.8699 31 1 -0.3633 0.4798 -0.9088 32 1 2.7144 -0.1078 -1.7948 33 1 1.2217 -1.0635 -1.8448 34 1 4.2244 -1.5670 -2.3814 35 1 6.5541 -6.2974 -1.5266 36 1 4.8748 -5.7079 -1.4289 37 1 5.0333 -8.1351 -2.0890 38 1 4.2212 -7.1290 -3.3128 39 1 7.1643 -7.9393 -3.3594 40 1 5.8787 -8.6712 -4.3489 41 1 8.7905 -6.0201 -8.6215 42 1 6.9035 -4.5552 -4.9174 43 1 7.8761 -5.5462 -3.7997 44 1 3.7797 -2.7202 1.0345 45 1 4.4003 -1.1366 0.4549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329093945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -54.268730 kcal Electronic energy + Delta-G solvation = -26341.292557 eV Core-core repulsion = 22678.434425 eV Total energy + Delta-G solvation = -3662.858132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95421 -38.99031 -37.39771 -37.10154 -34.32293 -33.29191 -31.97777 -31.08728 -30.54313 -27.24813 -26.36293 -25.19711 -24.16742 -22.52035 -22.00543 -20.99939 -20.39621 -19.04548 -17.73575 -17.49874 -16.78131 -16.64432 -16.06510 -15.86570 -15.15190 -15.04494 -14.78359 -14.46524 -14.20088 -14.11672 -13.98085 -13.63872 -13.54069 -13.16198 -12.81694 -12.76011 -12.54252 -12.27027 -12.17224 -11.96543 -11.78467 -11.68169 -11.36203 -11.12225 -10.94403 -10.55546 -10.51980 -10.37196 -10.15639 -9.80918 -9.61012 -9.52014 -9.18850 -8.79077 -8.66100 -8.22019 -8.13584 -6.15388 -4.16709 1.30653 1.40685 1.81123 2.38920 3.25418 3.30961 3.38066 3.46262 3.58516 3.96560 4.16291 4.22460 4.31381 4.35981 4.44803 4.65370 4.82934 4.97260 5.14423 5.16283 5.22980 5.30791 5.33473 5.42384 5.46923 5.48388 5.62434 5.67512 5.78689 5.99724 6.08564 6.11683 6.34760 6.41571 6.47663 6.54796 6.72413 6.76662 6.88353 7.10377 7.37751 7.56780 7.65310 7.74284 8.13047 8.44446 8.88518 9.45728 10.96747 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003055 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.528036 B = 9163.689875 C = 9966.859985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 H 0.101 0.899 4 C -0.138 4.138 5 C 0.142 3.858 6 H 0.111 0.889 7 N -0.698 5.698 8 C 0.517 3.483 9 O -0.504 6.504 10 C 0.495 3.505 11 O -0.532 6.532 12 N -0.566 5.566 13 C 0.050 3.950 14 C -0.131 4.131 15 C -0.103 4.103 16 C 0.005 3.995 17 H 0.031 0.969 18 C -0.515 4.515 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.878 3.122 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.098 3.902 27 C -0.082 4.082 28 S -0.279 6.279 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.414 0.586 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.266 0.734 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 12.261 17.166 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 H 0.119 0.881 4 C -0.177 4.177 5 C 0.036 3.964 6 H 0.129 0.871 7 N -0.352 5.352 8 C 0.300 3.700 9 O -0.381 6.381 10 C 0.276 3.724 11 O -0.410 6.410 12 N -0.298 5.298 13 C -0.071 4.071 14 C -0.169 4.169 15 C -0.141 4.141 16 C -0.014 4.014 17 H 0.049 0.951 18 C -0.553 4.553 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.708 3.292 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.022 4.022 27 C -0.231 4.231 28 S -0.053 6.053 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.252 0.748 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.577 12.081 18.239 26.289 hybrid contribution 0.405 1.283 -1.680 2.152 sum -14.172 13.364 16.559 25.567 Atomic orbital electron populations 1.21852 0.91638 1.03471 1.02606 1.23587 0.99611 1.00971 0.92526 0.88086 1.22301 1.01370 0.95866 0.98187 1.22037 0.89212 0.99537 0.85646 0.87148 1.45936 1.40641 1.10064 1.38521 1.20631 0.83008 0.82883 0.83511 1.90329 1.58401 1.42426 1.46926 1.19832 0.83305 0.84047 0.85232 1.90753 1.62486 1.44397 1.43367 1.48398 1.43330 1.10682 1.27349 1.23183 1.03640 0.88811 0.91500 1.21904 0.99745 0.96455 0.98769 1.21485 0.97543 0.99137 0.95935 1.19500 0.97742 0.90391 0.93785 0.95119 1.20965 1.23833 1.04163 1.06343 0.90302 1.25055 0.94476 0.98150 0.95345 1.69886 1.32757 1.37100 1.13407 0.87001 0.81210 0.84620 0.76396 1.19783 1.22095 1.19100 1.22851 0.91870 1.00364 0.87123 1.24840 0.98481 1.03684 0.96124 1.88022 1.40020 1.58113 1.19151 0.91151 0.91723 0.91133 0.89847 0.88887 0.74829 0.92020 0.83664 0.91590 0.92200 0.92512 0.92205 0.92449 0.90327 0.90781 0.86722 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.05 37.16 0.34 -0.39 16 2 C -0.04 -0.24 3.91 -26.36 -0.10 -0.34 16 3 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -0.87 5.73 -26.39 -0.15 -1.02 16 5 C 0.14 1.21 2.83 -66.82 -0.19 1.02 16 6 H 0.11 1.07 7.57 -51.93 -0.39 0.68 16 7 N -0.70 -7.34 5.09 -53.16 -0.27 -7.61 16 8 C 0.52 7.29 7.76 -11.59 -0.09 7.20 16 9 O -0.50 -7.39 12.75 5.50 0.07 -7.32 16 10 C 0.49 8.90 7.74 -11.59 -0.09 8.81 16 11 O -0.53 -10.86 15.94 5.49 0.09 -10.77 16 12 N -0.57 -10.69 2.97 -173.27 -0.52 -11.20 16 13 C 0.05 0.79 6.27 -3.71 -0.02 0.76 16 14 C -0.13 -2.09 6.08 -26.61 -0.16 -2.26 16 15 C -0.10 -1.99 5.11 -26.69 -0.14 -2.12 16 16 C 0.01 0.12 1.84 -91.65 -0.17 -0.04 16 17 H 0.03 0.76 7.19 -51.93 -0.37 0.38 16 18 C -0.51 -14.16 9.14 -34.44 -0.31 -14.48 16 19 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 21 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 22 Si 0.88 22.61 24.33 -169.99 -4.14 18.47 16 23 H -0.27 -6.98 6.92 56.52 0.39 -6.59 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.27 -6.80 6.53 56.52 0.37 -6.44 16 26 C 0.10 2.18 5.10 -3.71 -0.02 2.16 16 27 C -0.08 -0.70 7.13 38.30 0.27 -0.42 16 28 S -0.28 -2.45 22.67 -107.50 -2.44 -4.89 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 34 H 0.41 4.01 7.79 -40.82 -0.32 3.69 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.15 2.20 3.77 -56.81 -0.21 1.98 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 42 H 0.08 1.93 2.39 -51.93 -0.12 1.80 16 43 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -31.84 359.40 -8.83 -40.68 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.89 Total: 2.67 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.93 Total: 0.86 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.01 Total: -45.12 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.16 Total: -18.08 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.44 Total: -4.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.84 -8.83 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329093945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.594 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds