Wall clock time and date at job start Tue Mar 31 2020 14:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30555 * 2 1 4 4 C 1.53714 * 110.34076 * 237.82909 * 2 1 3 5 5 C 1.52937 * 112.48796 * 243.84615 * 4 2 1 6 6 H 1.09004 * 109.60717 * 89.64743 * 5 4 2 7 7 N 1.46500 * 109.60425 * 209.96429 * 5 4 2 8 8 C 1.34770 * 120.00494 * 204.99855 * 7 5 4 9 9 O 1.21352 * 119.99791 * 0.02562 * 8 7 5 10 10 C 1.49447 * 120.00085 * 180.02562 * 8 7 5 11 11 O 1.21352 * 120.00071 * 353.56228 * 10 8 7 12 12 N 1.34778 * 119.99923 * 173.56036 * 10 8 7 13 13 C 1.46923 * 120.63091 * 353.38949 * 12 10 8 14 14 C 1.53193 * 108.77791 * 126.11615 * 13 12 10 15 15 C 1.53044 * 109.31515 * 54.63380 * 14 13 12 16 16 C 1.53036 * 109.53459 * 298.63886 * 15 14 13 17 17 H 1.09006 * 109.50001 * 301.37624 * 16 15 14 18 18 C 1.50704 * 109.49794 * 181.31392 * 16 15 14 19 19 H 1.08003 * 119.99518 * 0.02562 * 18 16 15 20 20 C 1.37877 * 120.00371 * 179.97438 * 18 16 15 21 21 N 1.31517 * 120.00233 * 180.02562 * 20 18 16 22 22 Si 1.86799 * 119.99764 * 359.97438 * 20 18 16 23 23 H 1.48508 * 109.46787 * 90.00429 * 22 20 18 24 24 H 1.48499 * 109.47197 * 209.99866 * 22 20 18 25 25 H 1.48492 * 109.47461 * 330.00240 * 22 20 18 26 26 C 1.46928 * 120.63069 * 173.10368 * 12 10 8 27 27 C 1.55156 * 108.96445 * 329.89999 * 5 4 2 28 28 S 1.83400 * 110.43230 * 122.23152 * 2 1 3 29 29 H 1.08997 * 109.46997 * 182.17635 * 1 2 3 30 30 H 1.08999 * 109.46542 * 302.17191 * 1 2 3 31 31 H 1.08996 * 109.47039 * 62.16756 * 1 2 3 32 32 H 1.09000 * 108.88820 * 123.05101 * 4 2 1 33 33 H 1.08998 * 108.77088 * 4.56042 * 4 2 1 34 34 H 0.97001 * 119.99583 * 25.00309 * 7 5 4 35 35 H 1.09005 * 109.58811 * 245.90099 * 13 12 10 36 36 H 1.09003 * 109.58997 * 6.32390 * 13 12 10 37 37 H 1.09002 * 109.49660 * 174.58425 * 14 13 12 38 38 H 1.09000 * 109.49398 * 294.64906 * 14 13 12 39 39 H 1.09006 * 109.45745 * 58.65379 * 15 14 13 40 40 H 1.08993 * 109.46188 * 178.61299 * 15 14 13 41 41 H 0.96997 * 119.99891 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.58661 * 353.67411 * 26 12 10 43 43 H 1.09003 * 109.58351 * 114.09373 * 26 12 10 44 44 H 1.09000 * 111.13068 * 159.34885 * 27 5 4 45 45 H 1.08996 * 111.12672 * 283.52797 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0643 -0.7674 -1.2200 5 6 2.8517 -2.0178 -0.8257 6 1 2.1748 -2.8693 -0.7554 7 7 3.8799 -2.2894 -1.8333 8 6 4.3471 -3.5426 -1.9987 9 8 3.9157 -4.4463 -1.3132 10 6 5.3964 -3.8194 -3.0262 11 8 5.7438 -2.9428 -3.7901 12 7 5.9568 -5.0427 -3.1044 13 6 5.6546 -6.0703 -2.0988 14 6 5.1693 -7.3341 -2.8157 15 6 6.2102 -7.7582 -3.8545 16 6 6.3779 -6.6475 -4.8938 17 1 5.4188 -6.4490 -5.3723 18 6 7.3792 -7.0790 -5.9341 19 1 7.8489 -8.0489 -5.8618 20 6 7.6948 -6.2363 -6.9787 21 7 8.5683 -6.6132 -7.8869 22 14 6.8807 -4.5598 -7.1049 23 1 7.6976 -3.5567 -6.3756 24 1 6.7742 -4.1674 -8.5331 25 1 5.5232 -4.6224 -6.5062 26 6 6.8769 -5.3758 -4.2005 27 6 3.5236 -1.7770 0.5520 28 16 2.1703 -0.9166 1.4538 29 1 -0.3633 -1.0269 0.0390 30 1 -0.3632 0.5472 0.8699 31 1 -0.3633 0.4798 -0.9088 32 1 2.7144 -0.1078 -1.7948 33 1 1.2217 -1.0635 -1.8448 34 1 4.2244 -1.5670 -2.3814 35 1 6.5541 -6.2974 -1.5266 36 1 4.8748 -5.7079 -1.4289 37 1 5.0333 -8.1351 -2.0890 38 1 4.2212 -7.1290 -3.3128 39 1 7.1643 -7.9393 -3.3594 40 1 5.8787 -8.6712 -4.3489 41 1 8.7905 -6.0201 -8.6215 42 1 6.9035 -4.5552 -4.9174 43 1 7.8761 -5.5462 -3.7997 44 1 3.7797 -2.7202 1.0345 45 1 4.4003 -1.1366 0.4549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329093945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:04 Heat of formation + Delta-G solvation = -75.844785 kcal Electronic energy + Delta-G solvation = -26342.228165 eV Core-core repulsion = 22678.434425 eV Total energy + Delta-G solvation = -3663.793740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18550 -40.22664 -38.73812 -38.10619 -35.43745 -34.83405 -33.64278 -32.27940 -31.81294 -27.92248 -27.69023 -26.96795 -25.20753 -23.63512 -23.46333 -21.83655 -21.53707 -20.54993 -19.11993 -18.68689 -18.45160 -17.85097 -17.13175 -16.99595 -16.42510 -16.05474 -15.97079 -15.68584 -15.55379 -15.14075 -15.09303 -14.90214 -14.73772 -14.54667 -14.23749 -14.03776 -13.73018 -13.36617 -13.29708 -13.04973 -12.84335 -12.57175 -12.38009 -12.34869 -12.30763 -12.13314 -11.89747 -11.75728 -11.63168 -11.35007 -11.12218 -11.09603 -10.82362 -10.47094 -10.12579 -9.76153 -8.80621 -8.39496 -6.42663 0.17710 0.65651 1.11257 1.23475 1.28919 1.35731 1.36856 1.98742 2.20208 2.39848 2.96345 3.14068 3.36395 3.55835 3.75130 3.83534 3.95508 4.03558 4.12159 4.15603 4.33106 4.37742 4.44145 4.47535 4.54600 4.60026 4.62621 4.73118 4.79721 4.84149 4.90101 4.94364 5.01777 5.05142 5.16752 5.26593 5.28404 5.35657 5.48247 5.57172 5.62781 5.85848 6.21681 6.24652 6.57869 6.66696 6.79405 7.22699 8.76577 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022457 B = 0.003055 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.528036 B = 9163.689875 C = 9966.859985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.026 4.026 3 H 0.114 0.886 4 C -0.135 4.135 5 C 0.145 3.855 6 H 0.102 0.898 7 N -0.678 5.678 8 C 0.527 3.473 9 O -0.509 6.509 10 C 0.488 3.512 11 O -0.560 6.560 12 N -0.574 5.574 13 C 0.049 3.951 14 C -0.122 4.122 15 C -0.100 4.100 16 C 0.005 3.995 17 H 0.017 0.983 18 C -0.513 4.513 19 H 0.050 0.950 20 C 0.026 3.974 21 N -0.937 5.937 22 Si 0.936 3.064 23 H -0.273 1.273 24 H -0.291 1.291 25 H -0.265 1.265 26 C 0.105 3.895 27 C -0.075 4.075 28 S -0.319 6.319 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.421 0.579 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 13.725 18.903 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 H 0.132 0.868 4 C -0.174 4.174 5 C 0.039 3.961 6 H 0.120 0.880 7 N -0.332 5.332 8 C 0.308 3.692 9 O -0.387 6.387 10 C 0.271 3.729 11 O -0.440 6.440 12 N -0.305 5.305 13 C -0.070 4.070 14 C -0.160 4.160 15 C -0.138 4.138 16 C -0.014 4.014 17 H 0.035 0.965 18 C -0.552 4.552 19 H 0.068 0.932 20 C -0.173 4.173 21 N -0.577 5.577 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.017 4.017 27 C -0.224 4.224 28 S -0.093 6.093 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.259 0.741 35 H 0.095 0.905 36 H 0.177 0.823 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.554 13.565 20.013 29.301 hybrid contribution 0.991 0.813 -2.172 2.522 sum -15.563 14.378 17.841 27.699 Atomic orbital electron populations 1.21863 0.90838 1.03315 1.03455 1.23685 1.00135 1.00996 0.90595 0.86832 1.22293 1.01703 0.94989 0.98377 1.22182 0.88474 1.00481 0.84998 0.87951 1.45862 1.40168 1.08801 1.38347 1.19812 0.82470 0.84077 0.82799 1.90310 1.58544 1.42866 1.46942 1.20510 0.83500 0.83244 0.85627 1.90730 1.63390 1.45175 1.44686 1.48399 1.43076 1.11979 1.27042 1.23429 1.04857 0.87913 0.90842 1.21862 0.98037 0.97665 0.98432 1.21425 0.99028 0.97507 0.95813 1.19421 0.95460 0.92574 0.93990 0.96514 1.21267 1.23726 1.02818 1.07355 0.93221 1.25695 0.95093 1.01175 0.95339 1.69992 1.34673 1.38549 1.14462 0.86061 0.80220 0.81064 0.76159 1.19914 1.21791 1.19056 1.22356 0.92666 0.98674 0.88002 1.24754 0.98524 1.03381 0.95735 1.88210 1.40639 1.58919 1.21540 0.91754 0.91845 0.89337 0.88378 0.87799 0.74061 0.90524 0.82268 0.88036 0.92706 0.92220 0.92467 0.92263 0.92584 0.90933 0.87552 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.05 71.98 0.65 -0.42 16 2 C -0.03 -0.25 3.91 30.83 0.12 -0.13 16 3 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.13 -1.25 5.73 30.81 0.18 -1.08 16 5 C 0.14 2.09 2.83 45.71 0.13 2.22 16 6 H 0.10 1.73 7.57 -2.38 -0.02 1.72 16 7 N -0.68 -12.53 5.09 -440.47 -2.24 -14.77 16 8 C 0.53 13.64 7.76 87.27 0.68 14.32 16 9 O -0.51 -13.55 12.75 -3.25 -0.04 -13.59 16 10 C 0.49 16.79 7.74 87.27 0.68 17.47 16 11 O -0.56 -22.21 15.94 -3.25 -0.05 -22.26 16 12 N -0.57 -20.79 2.97 -820.48 -2.44 -23.23 16 13 C 0.05 1.43 6.27 86.36 0.54 1.97 16 14 C -0.12 -3.58 6.08 30.67 0.19 -3.40 16 15 C -0.10 -3.74 5.11 30.62 0.16 -3.58 16 16 C 0.01 0.24 1.84 -11.46 -0.02 0.22 16 17 H 0.02 0.83 7.19 -2.38 -0.02 0.81 16 18 C -0.51 -28.87 9.14 25.60 0.23 -28.64 16 19 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 20 C 0.03 1.51 5.45 84.65 0.46 1.97 16 21 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 22 Si 0.94 47.78 24.33 68.60 1.67 49.45 16 23 H -0.27 -13.84 6.92 99.48 0.69 -13.16 16 24 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -13.35 6.53 99.48 0.65 -12.70 16 26 C 0.10 4.61 5.10 86.36 0.44 5.05 16 27 C -0.07 -1.12 7.13 72.72 0.52 -0.61 16 28 S -0.32 -5.08 22.67 -56.49 -1.28 -6.36 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.68 7.67 -2.39 -0.02 0.67 16 33 H 0.10 0.81 7.61 -2.39 -0.02 0.79 16 34 H 0.42 6.99 7.79 -92.71 -0.72 6.27 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.16 4.31 3.77 -79.63 -0.30 4.01 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.06 2.73 2.39 -2.39 -0.01 2.73 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.01 359.40 0.78 -69.23 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.08 Total: 14.08 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.95 Total: 5.37 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.38 Total: -95.91 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.09 Total: -35.86 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 1.67 Total: 49.45 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.28 Total: -6.36 kcal Total: -70.01 0.78 -69.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329093945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.619 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds