Wall clock time and date at job start Tue Mar 31 2020 14:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 110.36007 * 2 1 4 4 C 1.54277 * 110.39853 * 237.67427 * 2 1 3 5 5 C 1.53857 * 108.92484 * 213.25535 * 4 2 1 6 6 H 1.08997 * 109.97618 * 287.85279 * 5 4 2 7 7 N 1.46506 * 109.97271 * 166.61589 * 5 4 2 8 8 C 1.34779 * 119.99747 * 155.00060 * 7 5 4 9 9 O 1.21350 * 120.00012 * 359.97438 * 8 7 5 10 10 C 1.49452 * 119.99739 * 179.72672 * 8 7 5 11 11 O 1.21344 * 120.00033 * 6.67814 * 10 8 7 12 12 N 1.34781 * 119.99761 * 186.67490 * 10 8 7 13 13 C 1.46918 * 120.62898 * 7.08350 * 12 10 8 14 14 C 1.53192 * 108.77652 * 233.58422 * 13 12 10 15 15 C 1.53038 * 109.31455 * 305.36821 * 14 13 12 16 16 C 1.53041 * 109.53649 * 61.36343 * 15 14 13 17 17 H 1.09004 * 109.49749 * 58.62114 * 16 15 14 18 18 C 1.50696 * 109.49813 * 178.68337 * 16 15 14 19 19 H 1.07999 * 120.00231 * 359.97438 * 18 16 15 20 20 C 1.37882 * 120.00289 * 180.02562 * 18 16 15 21 21 N 1.31523 * 119.99721 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00516 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.46988 * 59.99835 * 22 20 18 24 24 H 1.48492 * 109.47396 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47243 * 300.00476 * 22 20 18 26 26 C 1.46926 * 120.62836 * 186.80910 * 12 10 8 27 27 C 1.55130 * 106.89880 * 47.26015 * 5 4 2 28 28 S 1.83098 * 110.40143 * 122.45074 * 2 1 3 29 29 H 1.08999 * 109.47528 * 182.32251 * 1 2 3 30 30 H 1.09006 * 109.46924 * 302.32417 * 1 2 3 31 31 H 1.09003 * 109.47239 * 62.31786 * 1 2 3 32 32 H 1.09004 * 109.60610 * 93.33616 * 4 2 1 33 33 H 1.08999 * 109.61113 * 333.17547 * 4 2 1 34 34 H 0.97002 * 120.00346 * 335.00317 * 7 5 4 35 35 H 1.08998 * 109.59088 * 353.37729 * 13 12 10 36 36 H 1.09000 * 109.58682 * 113.80049 * 13 12 10 37 37 H 1.09001 * 109.49783 * 65.32130 * 14 13 12 38 38 H 1.09008 * 109.50071 * 185.38554 * 14 13 12 39 39 H 1.08999 * 109.46221 * 181.38618 * 15 14 13 40 40 H 1.09000 * 109.46391 * 301.34616 * 15 14 13 41 41 H 0.96991 * 119.99890 * 180.02562 * 21 20 18 42 42 H 1.08994 * 109.58133 * 246.20042 * 26 12 10 43 43 H 1.09004 * 109.58656 * 6.62199 * 26 12 10 44 44 H 1.08996 * 110.86079 * 76.06107 * 27 5 4 45 45 H 1.09006 * 110.85657 * 199.70362 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0218 0.0000 4 6 2.0677 -0.7732 -1.2219 5 6 3.3824 -1.4709 -0.8319 6 1 4.1780 -0.7335 -0.7258 7 7 3.7473 -2.4571 -1.8520 8 6 5.0364 -2.8169 -2.0108 9 8 5.8948 -2.3236 -1.3091 10 6 5.4079 -3.8275 -3.0473 11 8 4.5706 -4.2340 -3.8259 12 7 6.6729 -4.2873 -3.1173 13 6 7.6589 -3.9250 -2.0901 14 6 8.8930 -3.3331 -2.7781 15 6 9.4110 -4.3210 -3.8259 16 6 8.3324 -4.5548 -4.8861 17 1 8.0689 -3.6055 -5.3526 18 6 8.8549 -5.5026 -5.9347 19 1 9.8564 -5.8986 -5.8538 20 6 8.0549 -5.8634 -6.9982 21 7 6.8357 -5.3800 -7.0976 22 14 8.7028 -7.0376 -8.2984 23 1 9.0600 -8.3315 -7.6630 24 1 7.6558 -7.2642 -9.3267 25 1 9.9076 -6.4514 -8.9386 26 6 7.0905 -5.1651 -4.2190 27 6 3.1313 -2.1800 0.5248 28 16 2.1682 -0.9208 1.4482 29 1 -0.3634 -1.0268 0.0416 30 1 -0.3633 0.5495 0.8685 31 1 -0.3634 0.4774 -0.9101 32 1 2.2512 -0.0792 -2.0422 33 1 1.3364 -1.5189 -1.5338 34 1 3.0611 -2.8511 -2.4132 35 1 7.2279 -3.1865 -1.4141 36 1 7.9450 -4.8143 -1.5284 37 1 8.6239 -2.3952 -3.2640 38 1 9.6699 -3.1485 -2.0360 39 1 10.3036 -3.9129 -4.2998 40 1 9.6566 -5.2669 -3.3431 41 1 6.2728 -5.6341 -7.8454 42 1 7.3311 -6.1534 -3.8274 43 1 6.2842 -5.2451 -4.9482 44 1 2.5473 -3.0897 0.3851 45 1 4.0728 -2.3958 1.0300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329093947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:11 Heat of formation + Delta-G solvation = -64.619891 kcal Electronic energy + Delta-G solvation = -26128.438175 eV Core-core repulsion = 22465.131184 eV Total energy + Delta-G solvation = -3663.306992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69760 -38.68327 -37.20012 -36.81597 -34.18127 -33.23552 -31.77915 -30.98478 -29.76387 -27.15053 -26.12669 -25.04412 -23.78181 -22.17772 -21.81636 -21.22597 -20.25860 -18.84743 -17.52203 -17.00440 -16.86799 -16.24508 -15.85841 -15.68259 -15.07232 -14.86418 -14.59441 -14.33315 -13.95138 -13.83436 -13.77806 -13.36659 -13.30472 -12.90974 -12.77280 -12.61860 -12.21844 -12.10936 -12.02255 -11.79488 -11.57999 -11.44044 -11.32891 -10.98987 -10.74788 -10.50746 -10.43556 -10.30819 -10.09607 -9.92506 -9.45143 -9.26280 -9.14828 -8.59675 -8.45703 -8.03161 -7.87807 -6.05073 -4.13057 1.37530 1.63938 1.95308 2.60977 3.29513 3.35196 3.36866 3.53341 3.83180 4.10289 4.17937 4.36396 4.39491 4.53003 4.59728 4.72416 4.90660 5.11837 5.18709 5.25613 5.30495 5.40909 5.48214 5.50935 5.62185 5.65490 5.72772 5.82137 5.99386 6.21373 6.35821 6.53612 6.56317 6.70193 6.82068 6.95740 6.97642 7.11699 7.13155 7.54634 7.78075 7.88123 7.91626 8.09762 8.31168 8.50524 8.90687 9.52486 11.00692 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.002694 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.530848 B =10389.332086 C =11189.271012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 H 0.105 0.895 4 C -0.138 4.138 5 C 0.139 3.861 6 H 0.110 0.890 7 N -0.697 5.697 8 C 0.515 3.485 9 O -0.509 6.509 10 C 0.495 3.505 11 O -0.524 6.524 12 N -0.565 5.565 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.114 4.114 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.108 3.892 27 C -0.084 4.084 28 S -0.280 6.280 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.143 0.857 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.049 0.951 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 9.567 14.500 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 H 0.123 0.877 4 C -0.177 4.177 5 C 0.033 3.967 6 H 0.128 0.872 7 N -0.351 5.351 8 C 0.298 3.702 9 O -0.386 6.386 10 C 0.276 3.724 11 O -0.401 6.401 12 N -0.297 5.297 13 C -0.072 4.072 14 C -0.166 4.166 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.011 4.011 27 C -0.234 4.234 28 S -0.054 6.054 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.717 9.840 15.621 21.347 hybrid contribution 0.324 -1.092 -2.207 2.484 sum -10.393 8.747 13.414 19.091 Atomic orbital electron populations 1.21889 0.91841 1.03249 1.02508 1.23634 0.99341 1.01220 0.92808 0.87721 1.22636 0.96229 1.00463 0.98364 1.22149 0.98216 0.90617 0.85757 0.87177 1.45795 1.08767 1.43217 1.37324 1.20906 0.82605 0.82859 0.83792 1.90321 1.46867 1.54709 1.46660 1.19681 0.84244 0.83302 0.85223 1.90763 1.48564 1.58462 1.42331 1.48462 1.08116 1.46666 1.26439 1.23079 0.90480 1.02107 0.91510 1.21855 0.96533 0.99551 0.98611 1.21672 0.99510 0.97380 0.96584 1.19043 0.89886 0.97011 0.91825 0.95218 1.21063 1.00043 1.28012 1.06703 0.92280 1.25062 0.94947 0.96173 0.97876 1.69864 1.07585 1.43555 1.31084 0.86619 0.78524 0.81375 0.81272 1.20214 1.21242 1.20238 1.22598 1.02151 0.90190 0.86185 1.24728 1.02761 0.99181 0.96724 1.87716 1.64451 1.37154 1.16091 0.91432 0.91680 0.91349 0.88722 0.89520 0.74769 0.84080 0.92649 0.92341 0.92234 0.93037 0.93220 0.92575 0.93286 0.85943 0.88590 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 2 C -0.04 -0.28 3.86 -26.06 -0.10 -0.39 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.14 -0.97 5.46 -25.62 -0.14 -1.11 16 5 C 0.14 1.31 2.90 -66.35 -0.19 1.12 16 6 H 0.11 1.17 7.57 -51.93 -0.39 0.77 16 7 N -0.70 -8.09 5.11 -52.71 -0.27 -8.36 16 8 C 0.52 7.93 7.78 -11.58 -0.09 7.84 16 9 O -0.51 -8.16 12.76 5.50 0.07 -8.09 16 10 C 0.49 9.60 7.74 -11.58 -0.09 9.51 16 11 O -0.52 -11.48 15.94 5.50 0.09 -11.40 16 12 N -0.57 -11.51 2.97 -173.02 -0.51 -12.02 16 13 C 0.05 0.87 6.27 -3.71 -0.02 0.84 16 14 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 15 C -0.11 -2.32 5.10 -26.69 -0.14 -2.46 16 16 C 0.04 1.02 2.26 -91.43 -0.21 0.82 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -13.95 8.56 -34.44 -0.29 -14.24 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.69 5.30 -17.81 -0.09 1.60 16 21 N -0.88 -25.19 11.41 55.43 0.63 -24.56 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.59 5.41 -3.49 -0.02 2.58 16 27 C -0.08 -0.79 7.03 38.28 0.27 -0.52 16 28 S -0.28 -2.64 22.69 -107.50 -2.44 -5.08 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.55 7.82 -51.93 -0.41 0.14 16 34 H 0.42 4.49 8.09 -40.82 -0.33 4.16 16 35 H 0.14 2.36 3.78 -56.75 -0.21 2.15 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.12 3.36 5.20 -51.93 -0.27 3.09 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -30.02 367.17 -9.93 -39.95 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.07 Total: 5.28 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.94 Total: 2.76 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.15 Total: -44.94 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.16 Total: -19.48 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.44 Total: -5.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.02 -9.93 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329093947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.667 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds