Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.69798 * 2 1 4 4 S 1.83962 * 110.78505 * 236.47608 * 2 1 3 5 5 C 1.83955 * 94.80460 * 207.23250 * 4 2 1 6 6 C 1.54258 * 102.58153 * 34.49772 * 5 4 2 7 7 C 1.52332 * 112.58407 * 335.46797 * 6 5 4 8 8 H 1.09005 * 108.75155 * 239.25654 * 7 6 5 9 9 N 1.46499 * 108.86752 * 120.82471 * 7 6 5 10 10 C 1.34777 * 120.00543 * 86.47773 * 9 7 6 11 11 O 1.21352 * 119.99932 * 359.97438 * 10 9 7 12 12 C 1.49452 * 120.00204 * 180.02562 * 10 9 7 13 13 O 1.21342 * 119.99941 * 353.21465 * 12 10 9 14 14 N 1.34778 * 119.99705 * 173.22494 * 12 10 9 15 15 C 1.46928 * 120.63276 * 351.39641 * 14 12 10 16 16 C 1.53195 * 108.77161 * 233.63178 * 15 14 12 17 17 C 1.53041 * 109.31164 * 305.36299 * 16 15 14 18 18 C 1.50701 * 109.45758 * 181.38737 * 17 16 15 19 19 H 1.08005 * 119.99808 * 359.97254 * 18 17 16 20 20 C 1.37878 * 120.00317 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00143 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99480 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46994 * 90.00214 * 22 20 18 24 24 H 1.48502 * 109.46630 * 209.99888 * 22 20 18 25 25 H 1.48493 * 109.47261 * 329.99804 * 22 20 18 26 26 C 1.53039 * 109.52478 * 61.37675 * 17 16 15 27 27 C 1.46926 * 120.62676 * 171.41711 * 14 12 10 28 28 H 1.08996 * 109.47389 * 289.38788 * 1 2 3 29 29 H 1.09008 * 109.47327 * 49.38090 * 1 2 3 30 30 H 1.09002 * 109.47829 * 169.38109 * 1 2 3 31 31 H 1.09008 * 110.78208 * 152.76657 * 5 4 2 32 32 H 1.09002 * 110.78895 * 276.02753 * 5 4 2 33 33 H 1.08999 * 108.86884 * 214.64864 * 6 5 4 34 34 H 1.08993 * 108.86988 * 96.28823 * 6 5 4 35 35 H 0.96999 * 119.99891 * 266.47689 * 9 7 6 36 36 H 1.08998 * 109.58641 * 113.84682 * 15 14 12 37 37 H 1.08997 * 109.70544 * 353.48668 * 15 14 12 38 38 H 1.08999 * 109.49470 * 185.41391 * 16 15 14 39 39 H 1.08998 * 109.49872 * 65.31464 * 16 15 14 40 40 H 1.08994 * 109.46175 * 301.36066 * 17 16 15 41 41 H 0.97004 * 119.99602 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.50179 * 58.57981 * 26 17 16 43 43 H 1.09008 * 109.49464 * 178.67320 * 26 17 16 44 44 H 1.08995 * 109.58587 * 246.15120 * 27 14 12 45 45 H 1.09001 * 109.58776 * 6.44193 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 16 2.1828 -0.9499 -1.4338 5 6 3.7613 -1.4093 -0.6084 6 6 3.3324 -1.5849 0.8629 7 6 2.0774 -0.7922 1.2050 8 1 2.3121 -0.0940 2.0086 9 7 1.0437 -1.7196 1.6715 10 6 0.9923 -2.0734 2.9710 11 8 1.8026 -1.6241 3.7546 12 6 -0.0618 -3.0200 3.4466 13 8 -0.9444 -3.3738 2.6928 14 7 -0.0323 -3.4805 4.7130 15 6 1.1243 -3.2148 5.5793 16 6 1.6373 -4.5456 6.1385 17 6 0.4878 -5.2800 6.8323 18 6 0.9967 -6.5740 7.4132 19 1 2.0357 -6.8457 7.2986 20 6 0.1360 -7.4112 8.0909 21 7 0.5802 -8.5403 8.5983 22 14 -1.6613 -6.9417 8.2883 23 1 -2.4409 -7.4751 7.1425 24 1 -2.1863 -7.5144 9.5538 25 1 -1.7852 -5.4624 8.3255 26 6 -0.6169 -5.5771 5.8156 27 6 -1.1558 -4.2580 5.2531 28 1 -0.3634 0.3411 0.9693 29 1 -0.3634 0.6691 -0.7801 30 1 -0.3635 -1.0100 -0.1894 31 1 4.1510 -2.3439 -1.0120 32 1 4.4964 -0.6106 -0.7076 33 1 4.1455 -1.2538 1.5090 34 1 3.1442 -2.6417 1.0515 35 1 0.3963 -2.0791 1.0450 36 1 0.8236 -2.5649 6.4011 37 1 1.9130 -2.7327 5.0019 38 1 2.4339 -4.3551 6.8576 39 1 2.0214 -5.1588 5.3233 40 1 0.0877 -4.6558 7.6312 41 1 -0.0253 -9.1291 9.0754 42 1 -0.2114 -6.1805 5.0036 43 1 -1.4250 -6.1209 6.3050 44 1 -1.6423 -3.6931 6.0482 45 1 -1.8735 -4.4633 4.4588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329406815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = -49.289644 kcal Electronic energy + Delta-G solvation = -26435.173597 eV Core-core repulsion = 22772.531375 eV Total energy + Delta-G solvation = -3662.642223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03311 -39.16945 -37.42884 -37.14749 -33.70795 -32.99212 -32.25406 -31.49574 -30.64119 -27.49786 -26.64725 -24.50062 -23.83994 -23.00589 -22.18219 -20.58542 -20.37347 -19.22492 -17.68233 -17.37055 -16.92279 -16.73342 -16.14383 -15.91799 -15.26771 -15.02302 -14.64977 -14.61820 -14.25027 -14.12658 -13.89128 -13.55960 -13.46419 -13.15794 -12.80811 -12.61919 -12.52725 -12.46342 -12.19319 -11.93967 -11.83590 -11.56231 -11.34476 -11.24989 -10.98682 -10.74019 -10.32600 -10.19314 -10.06741 -9.76486 -9.69843 -9.61676 -9.13891 -8.88726 -8.56379 -8.32493 -8.15041 -6.10516 -4.09876 1.34281 1.39702 1.82676 2.26697 3.19284 3.23000 3.32909 3.35592 3.49723 3.78175 4.26324 4.30704 4.36823 4.41243 4.52895 4.58438 4.78551 4.96509 5.19003 5.21190 5.24416 5.33717 5.37056 5.45753 5.57143 5.61102 5.66683 5.68685 5.77992 5.86837 5.91574 6.06937 6.25848 6.35292 6.53283 6.63295 6.69866 6.79464 6.93734 7.15024 7.43429 7.49733 7.67521 7.72495 8.02364 8.48701 8.93529 9.51633 11.02809 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.002827 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.666799 B = 9901.922256 C =10302.346444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 H 0.111 0.889 4 S -0.291 6.291 5 C -0.065 4.065 6 C -0.141 4.141 7 C 0.142 3.858 8 H 0.107 0.893 9 N -0.696 5.696 10 C 0.512 3.488 11 O -0.508 6.508 12 C 0.502 3.498 13 O -0.534 6.534 14 N -0.564 5.564 15 C 0.066 3.934 16 C -0.113 4.113 17 C 0.012 3.988 18 C -0.513 4.513 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.885 3.115 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.265 1.265 26 C -0.133 4.133 27 C 0.103 3.897 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 19.018 -17.261 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 H 0.129 0.871 4 S -0.065 6.065 5 C -0.213 4.213 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.125 0.875 9 N -0.352 5.352 10 C 0.294 3.706 11 O -0.384 6.384 12 C 0.283 3.717 13 O -0.413 6.413 14 N -0.296 5.296 15 C -0.055 4.055 16 C -0.151 4.151 17 C -0.007 4.007 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.715 3.285 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.171 4.171 27 C -0.019 4.019 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.342 18.735 -18.086 26.145 hybrid contribution -0.793 0.004 1.063 1.326 sum 1.549 18.738 -17.023 25.364 Atomic orbital electron populations 1.21692 0.91018 1.03561 1.03312 1.24214 1.00241 1.00901 0.92032 0.87120 1.88225 1.23010 1.68942 1.26295 1.24149 0.96061 1.05339 0.95739 1.22514 0.97478 1.02831 0.95251 1.21604 0.86827 0.90979 0.97053 0.87465 1.46103 1.33450 1.46587 1.09077 1.20418 0.85025 0.82353 0.82760 1.90528 1.40951 1.53714 1.53216 1.19847 0.86110 0.82588 0.83121 1.90728 1.37867 1.58735 1.53943 1.48070 1.20302 1.50112 1.11080 1.22991 0.88458 0.99101 0.94906 1.21846 0.99350 0.94108 0.99845 1.19170 0.91728 0.96836 0.92940 1.21038 0.97751 1.02263 1.34035 0.90827 1.25046 0.98580 0.94719 0.94973 1.69899 1.35735 1.11210 1.37037 0.86880 0.85770 0.79233 0.76582 1.20471 1.22438 1.18978 1.22373 1.00092 0.94254 1.00400 1.21958 0.87917 0.93515 0.98468 0.90550 0.91159 0.90997 0.87423 0.88889 0.89320 0.89466 0.74459 0.91684 0.85396 0.91103 0.92471 0.95336 0.92645 0.91554 0.92243 0.91414 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.33 37.16 0.31 -0.60 16 2 C -0.04 -0.30 3.88 -26.08 -0.10 -0.40 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 4 S -0.29 -2.43 22.72 -107.50 -2.44 -4.87 16 5 C -0.06 -0.42 7.46 37.82 0.28 -0.13 16 6 C -0.14 -1.04 6.09 -26.41 -0.16 -1.20 16 7 C 0.14 1.12 2.86 -67.62 -0.19 0.92 16 8 H 0.11 0.87 7.44 -51.93 -0.39 0.48 16 9 N -0.70 -6.96 4.02 -53.93 -0.22 -7.18 16 10 C 0.51 6.69 7.71 -11.58 -0.09 6.60 16 11 O -0.51 -7.16 12.77 5.50 0.07 -7.09 16 12 C 0.50 7.90 7.73 -11.58 -0.09 7.81 16 13 O -0.53 -9.19 15.93 5.50 0.09 -9.11 16 14 N -0.56 -9.49 2.97 -173.28 -0.51 -10.00 16 15 C 0.07 1.08 5.98 -3.71 -0.02 1.06 16 16 C -0.11 -2.17 5.30 -26.61 -0.14 -2.31 16 17 C 0.01 0.27 1.66 -91.73 -0.15 0.12 16 18 C -0.51 -14.05 9.14 -34.44 -0.31 -14.36 16 19 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 20 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 21 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 22 Si 0.88 21.42 24.38 -169.99 -4.14 17.28 16 23 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16 24 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 26 C -0.13 -2.80 4.85 -26.61 -0.13 -2.93 16 27 C 0.10 1.83 6.44 -3.71 -0.02 1.81 16 28 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.54 6.63 -51.93 -0.34 0.19 16 31 H 0.11 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.78 7.79 -51.93 -0.40 0.37 16 35 H 0.42 4.12 6.17 -40.82 -0.25 3.87 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.13 2.00 4.32 -54.77 -0.24 1.76 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 1.32 3.24 -51.92 -0.17 1.15 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -31.11 355.72 -8.73 -39.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.78 Total: 4.09 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.92 Total: -1.78 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.04 Total: -43.71 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.16 Total: -16.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.44 Total: -4.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.11 -8.73 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329406815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.456 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds