Wall clock time and date at job start Tue Mar 31 2020 14:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.69798 * 2 1 4 4 S 1.83962 * 110.78505 * 236.47608 * 2 1 3 5 5 C 1.83955 * 94.80460 * 207.23250 * 4 2 1 6 6 C 1.54258 * 102.58153 * 34.49772 * 5 4 2 7 7 C 1.52332 * 112.58407 * 335.46797 * 6 5 4 8 8 H 1.09005 * 108.75155 * 239.25654 * 7 6 5 9 9 N 1.46499 * 108.86752 * 120.82471 * 7 6 5 10 10 C 1.34777 * 120.00543 * 86.47773 * 9 7 6 11 11 O 1.21352 * 119.99932 * 359.97438 * 10 9 7 12 12 C 1.49452 * 120.00204 * 180.02562 * 10 9 7 13 13 O 1.21342 * 119.99941 * 353.21465 * 12 10 9 14 14 N 1.34778 * 119.99705 * 173.22494 * 12 10 9 15 15 C 1.46928 * 120.63276 * 351.39641 * 14 12 10 16 16 C 1.53195 * 108.77161 * 233.63178 * 15 14 12 17 17 C 1.53041 * 109.31164 * 305.36299 * 16 15 14 18 18 C 1.50701 * 109.45758 * 181.38737 * 17 16 15 19 19 H 1.08005 * 119.99808 * 359.97254 * 18 17 16 20 20 C 1.37878 * 120.00317 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00143 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99480 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46994 * 90.00214 * 22 20 18 24 24 H 1.48502 * 109.46630 * 209.99888 * 22 20 18 25 25 H 1.48493 * 109.47261 * 329.99804 * 22 20 18 26 26 C 1.53039 * 109.52478 * 61.37675 * 17 16 15 27 27 C 1.46926 * 120.62676 * 171.41711 * 14 12 10 28 28 H 1.08996 * 109.47389 * 289.38788 * 1 2 3 29 29 H 1.09008 * 109.47327 * 49.38090 * 1 2 3 30 30 H 1.09002 * 109.47829 * 169.38109 * 1 2 3 31 31 H 1.09008 * 110.78208 * 152.76657 * 5 4 2 32 32 H 1.09002 * 110.78895 * 276.02753 * 5 4 2 33 33 H 1.08999 * 108.86884 * 214.64864 * 6 5 4 34 34 H 1.08993 * 108.86988 * 96.28823 * 6 5 4 35 35 H 0.96999 * 119.99891 * 266.47689 * 9 7 6 36 36 H 1.08998 * 109.58641 * 113.84682 * 15 14 12 37 37 H 1.08997 * 109.70544 * 353.48668 * 15 14 12 38 38 H 1.08999 * 109.49470 * 185.41391 * 16 15 14 39 39 H 1.08998 * 109.49872 * 65.31464 * 16 15 14 40 40 H 1.08994 * 109.46175 * 301.36066 * 17 16 15 41 41 H 0.97004 * 119.99602 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.50179 * 58.57981 * 26 17 16 43 43 H 1.09008 * 109.49464 * 178.67320 * 26 17 16 44 44 H 1.08995 * 109.58587 * 246.15120 * 27 14 12 45 45 H 1.09001 * 109.58776 * 6.44193 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0197 0.0000 4 16 2.1828 -0.9499 -1.4338 5 6 3.7613 -1.4093 -0.6084 6 6 3.3324 -1.5849 0.8629 7 6 2.0774 -0.7922 1.2050 8 1 2.3121 -0.0940 2.0086 9 7 1.0437 -1.7196 1.6715 10 6 0.9923 -2.0734 2.9710 11 8 1.8026 -1.6241 3.7546 12 6 -0.0618 -3.0200 3.4466 13 8 -0.9444 -3.3738 2.6928 14 7 -0.0323 -3.4805 4.7130 15 6 1.1243 -3.2148 5.5793 16 6 1.6373 -4.5456 6.1385 17 6 0.4878 -5.2800 6.8323 18 6 0.9967 -6.5740 7.4132 19 1 2.0357 -6.8457 7.2986 20 6 0.1360 -7.4112 8.0909 21 7 0.5802 -8.5403 8.5983 22 14 -1.6613 -6.9417 8.2883 23 1 -2.4409 -7.4751 7.1425 24 1 -2.1863 -7.5144 9.5538 25 1 -1.7852 -5.4624 8.3255 26 6 -0.6169 -5.5771 5.8156 27 6 -1.1558 -4.2580 5.2531 28 1 -0.3634 0.3411 0.9693 29 1 -0.3634 0.6691 -0.7801 30 1 -0.3635 -1.0100 -0.1894 31 1 4.1510 -2.3439 -1.0120 32 1 4.4964 -0.6106 -0.7076 33 1 4.1455 -1.2538 1.5090 34 1 3.1442 -2.6417 1.0515 35 1 0.3963 -2.0791 1.0450 36 1 0.8236 -2.5649 6.4011 37 1 1.9130 -2.7327 5.0019 38 1 2.4339 -4.3551 6.8576 39 1 2.0214 -5.1588 5.3233 40 1 0.0877 -4.6558 7.6312 41 1 -0.0253 -9.1291 9.0754 42 1 -0.2114 -6.1805 5.0036 43 1 -1.4250 -6.1209 6.3050 44 1 -1.6423 -3.6931 6.0482 45 1 -1.8735 -4.4633 4.4588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329406815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:25 Heat of formation + Delta-G solvation = -69.468559 kcal Electronic energy + Delta-G solvation = -26436.048621 eV Core-core repulsion = 22772.531375 eV Total energy + Delta-G solvation = -3663.517246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14213 -40.28981 -38.72547 -38.15773 -35.40687 -33.83875 -33.38161 -32.86357 -32.11610 -28.79078 -27.74156 -25.79028 -24.55668 -24.42733 -23.59069 -21.88640 -21.09145 -20.63705 -18.94953 -18.75929 -18.32034 -17.72755 -17.11678 -17.06383 -16.53928 -16.29276 -15.63404 -15.59716 -15.42779 -15.09743 -15.02963 -14.88215 -14.60330 -14.43595 -14.18640 -14.02614 -13.80837 -13.56318 -13.24097 -13.01963 -12.92234 -12.57240 -12.35319 -12.27715 -12.14675 -12.10492 -11.88099 -11.72057 -11.50685 -11.30493 -11.11179 -10.91162 -10.70467 -10.47677 -10.16102 -9.74722 -8.78166 -8.29683 -6.33861 0.26847 0.79235 1.18524 1.29808 1.31140 1.36500 1.47132 2.05503 2.32535 2.39058 3.05457 3.14928 3.26213 3.70006 3.84476 3.92906 3.99146 4.08190 4.10629 4.16284 4.24632 4.25611 4.40188 4.42385 4.58554 4.67703 4.71149 4.75393 4.77087 4.82735 4.89569 4.94634 4.97358 5.01984 5.05836 5.17188 5.26387 5.33171 5.51563 5.66433 5.70746 5.92562 6.21803 6.30817 6.60688 6.73448 6.85718 7.31678 8.87224 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.002827 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.666799 B = 9901.922256 C =10302.346444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 H 0.132 0.868 4 S -0.339 6.339 5 C -0.051 4.051 6 C -0.139 4.139 7 C 0.141 3.859 8 H 0.113 0.887 9 N -0.681 5.681 10 C 0.519 3.481 11 O -0.518 6.518 12 C 0.500 3.500 13 O -0.550 6.550 14 N -0.572 5.572 15 C 0.079 3.921 16 C -0.109 4.109 17 C 0.012 3.988 18 C -0.518 4.518 19 H 0.031 0.969 20 C 0.008 3.992 21 N -0.952 5.952 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.301 1.301 25 H -0.236 1.236 26 C -0.129 4.129 27 C 0.109 3.891 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.086 0.914 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 21.972 -18.291 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 H 0.150 0.850 4 S -0.113 6.113 5 C -0.199 4.199 6 C -0.179 4.179 7 C 0.035 3.965 8 H 0.131 0.869 9 N -0.336 5.336 10 C 0.300 3.700 11 O -0.395 6.395 12 C 0.283 3.717 13 O -0.429 6.429 14 N -0.304 5.304 15 C -0.041 4.041 16 C -0.147 4.147 17 C -0.007 4.007 18 C -0.556 4.556 19 H 0.050 0.950 20 C -0.189 4.189 21 N -0.593 5.593 22 Si 0.774 3.226 23 H -0.193 1.193 24 H -0.229 1.229 25 H -0.159 1.159 26 C -0.167 4.167 27 C -0.013 4.013 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.257 0.743 36 H 0.097 0.903 37 H 0.158 0.842 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.564 21.725 -19.166 29.014 hybrid contribution -0.426 -0.956 1.312 1.678 sum 1.139 20.770 -17.854 27.412 Atomic orbital electron populations 1.21693 0.90960 1.03158 1.03758 1.24240 1.00169 1.01290 0.90136 0.85046 1.88437 1.25013 1.69749 1.28095 1.24188 0.95101 1.06185 0.94469 1.22479 0.97564 1.01688 0.96144 1.21816 0.86342 0.90664 0.97664 0.86896 1.46101 1.33544 1.46038 1.07910 1.19886 0.84390 0.82087 0.83634 1.90509 1.41159 1.54224 1.53656 1.20310 0.86426 0.82507 0.82440 1.90719 1.38673 1.59311 1.54173 1.48106 1.20197 1.50449 1.11668 1.22928 0.88731 0.97103 0.95388 1.21753 0.98305 0.95355 0.99261 1.19143 0.93422 0.94553 0.93621 1.21385 0.96036 1.04368 1.33803 0.95045 1.25953 1.03685 0.94514 0.94734 1.70062 1.37627 1.12868 1.38732 0.85864 0.79696 0.80606 0.76470 1.19341 1.22879 1.15947 1.22208 0.99097 0.96059 0.99383 1.21827 0.88254 0.91984 0.99190 0.90265 0.90293 0.92056 0.87112 0.86991 0.88205 0.91102 0.74278 0.90255 0.84162 0.90979 0.93798 0.94829 0.92647 0.93135 0.93099 0.89560 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.33 71.98 0.60 -0.93 16 2 C -0.03 -0.32 3.88 31.02 0.12 -0.20 16 3 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 4 S -0.34 -5.10 22.72 -56.49 -1.28 -6.39 16 5 C -0.05 -0.55 7.46 72.41 0.54 -0.01 16 6 C -0.14 -1.74 6.09 30.80 0.19 -1.56 16 7 C 0.14 1.86 2.86 45.19 0.13 1.99 16 8 H 0.11 1.47 7.44 -2.38 -0.02 1.45 16 9 N -0.68 -12.21 4.02 -442.89 -1.78 -13.99 16 10 C 0.52 12.37 7.71 87.27 0.67 13.04 16 11 O -0.52 -13.23 12.77 -3.25 -0.04 -13.27 16 12 C 0.50 14.71 7.73 87.27 0.67 15.39 16 13 O -0.55 -17.91 15.93 -3.22 -0.05 -17.96 16 14 N -0.57 -17.95 2.97 -820.48 -2.44 -20.39 16 15 C 0.08 2.41 5.98 86.36 0.52 2.92 16 16 C -0.11 -4.08 5.30 30.67 0.16 -3.91 16 17 C 0.01 0.51 1.66 -11.51 -0.02 0.49 16 18 C -0.52 -29.12 9.14 25.60 0.23 -28.89 16 19 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 20 C 0.01 0.45 5.45 84.65 0.46 0.91 16 21 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 22 Si 0.95 43.89 24.38 68.60 1.67 45.56 16 23 H -0.27 -11.85 6.86 99.48 0.68 -11.17 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.24 -9.77 6.53 99.48 0.65 -9.12 16 26 C -0.13 -5.27 4.85 30.67 0.15 -5.12 16 27 C 0.11 3.61 6.44 86.36 0.56 4.17 16 28 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.82 6.63 -2.39 -0.02 0.81 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.15 7.79 -2.39 -0.02 1.13 16 35 H 0.42 7.56 6.17 -92.71 -0.57 6.99 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 37 H 0.14 4.03 4.32 -47.40 -0.20 3.83 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.64 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 2.16 3.24 -2.38 -0.01 2.15 16 44 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.09 2.95 7.00 -2.39 -0.02 2.93 16 Total: -1.00 -68.53 355.72 1.52 -67.01 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.16 Total: 20.55 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.99 Total: -1.71 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.92 Total: -93.80 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.09 Total: -31.22 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.67 Total: 45.56 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.28 Total: -6.39 kcal Total: -68.53 1.52 -67.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329406815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.459 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds