Wall clock time and date at job start Tue Mar 31 2020 14:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.30131 * 2 1 4 4 S 1.83393 * 110.33532 * 122.27899 * 2 1 3 5 5 C 1.83991 * 95.85013 * 138.62420 * 4 2 1 6 6 C 1.55158 * 100.90786 * 324.64677 * 5 4 2 7 7 C 1.52939 * 108.95904 * 41.44098 * 6 5 4 8 8 H 1.09007 * 108.88611 * 209.10481 * 7 6 5 9 9 N 1.46499 * 108.77771 * 90.61906 * 7 6 5 10 10 C 1.34772 * 120.00097 * 84.21055 * 9 7 6 11 11 O 1.21351 * 120.00305 * 359.97438 * 10 9 7 12 12 C 1.49449 * 120.00198 * 180.02562 * 10 9 7 13 13 O 1.21353 * 119.99768 * 353.06955 * 12 10 9 14 14 N 1.34771 * 120.00625 * 173.07041 * 12 10 9 15 15 C 1.46934 * 120.62735 * 1.67109 * 14 12 10 16 16 C 1.52761 * 109.00843 * 233.58624 * 15 14 12 17 17 C 1.53035 * 109.38105 * 305.58735 * 16 15 14 18 18 C 1.50702 * 109.44762 * 181.25234 * 17 16 15 19 19 H 1.07996 * 120.00642 * 239.93816 * 18 17 16 20 20 C 1.37882 * 119.99719 * 59.94092 * 18 17 16 21 21 N 1.31517 * 119.99996 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46809 * 89.99856 * 22 20 18 24 24 H 1.48495 * 109.47325 * 209.99869 * 22 20 18 25 25 H 1.48496 * 109.47016 * 330.00290 * 22 20 18 26 26 C 1.53045 * 109.53953 * 61.24277 * 17 16 15 27 27 C 1.46921 * 120.63508 * 181.95192 * 14 12 10 28 28 H 1.08995 * 109.47091 * 182.17395 * 1 2 3 29 29 H 1.08997 * 109.47524 * 302.17793 * 1 2 3 30 30 H 1.09006 * 109.46624 * 62.17892 * 1 2 3 31 31 H 1.09005 * 111.13328 * 82.55523 * 5 4 2 32 32 H 1.08998 * 111.13117 * 206.69351 * 5 4 2 33 33 H 1.08999 * 109.59736 * 281.50895 * 6 5 4 34 34 H 1.08997 * 109.60055 * 161.37060 * 6 5 4 35 35 H 0.96996 * 119.99694 * 264.20685 * 9 7 6 36 36 H 1.09003 * 109.58392 * 353.41833 * 15 14 12 37 37 H 1.08998 * 109.58331 * 113.84169 * 15 14 12 38 38 H 1.08995 * 109.56168 * 185.55401 * 16 15 14 39 39 H 1.08997 * 109.36158 * 65.50017 * 16 15 14 40 40 H 1.09001 * 109.46206 * 301.21927 * 17 16 15 41 41 H 0.96998 * 119.99327 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.49637 * 178.68224 * 26 17 16 43 43 H 1.08999 * 109.52483 * 58.60370 * 26 17 16 44 44 H 1.08994 * 109.59001 * 246.15361 * 27 14 12 45 45 H 1.09000 * 109.58493 * 6.58181 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 16 2.1674 -0.9184 1.4539 5 6 3.5204 -1.7802 0.5529 6 6 2.8495 -2.0193 -0.8255 7 6 2.0644 -0.7675 -1.2198 8 1 1.2233 -1.0616 -1.8478 9 7 2.9428 0.1172 -1.9892 10 6 3.0984 -0.0737 -3.3143 11 8 2.5113 -0.9787 -3.8700 12 6 3.9950 0.8284 -4.0991 13 8 4.4834 1.8064 -3.5723 14 7 4.2610 0.5558 -5.3919 15 6 3.6482 -0.6040 -6.0538 16 6 4.7488 -1.4581 -6.6806 17 6 5.6043 -0.5869 -7.6031 18 6 6.6717 -1.4346 -8.2461 19 1 7.7143 -1.2008 -8.0894 20 6 6.3170 -2.5087 -9.0345 21 7 5.0473 -2.7938 -9.2250 22 14 7.6400 -3.5590 -9.8321 23 1 8.0085 -4.6695 -8.9176 24 1 7.1258 -4.1184 -11.1079 25 1 8.8375 -2.7242 -10.1045 26 6 6.2619 0.5293 -6.7883 27 6 5.1741 1.4092 -6.1643 28 1 -0.3633 -1.0269 0.0390 29 1 -0.3634 0.5473 0.8698 30 1 -0.3633 0.4797 -0.9090 31 1 4.3982 -1.1411 0.4571 32 1 3.7752 -2.7237 1.0356 33 1 2.1718 -2.8704 -0.7595 34 1 3.6150 -2.2220 -1.5745 35 1 3.4124 0.8404 -1.5450 36 1 3.1009 -1.1963 -5.3204 37 1 2.9665 -0.2621 -6.8326 38 1 4.2995 -2.2666 -7.2573 39 1 5.3743 -1.8769 -5.8924 40 1 4.9737 -0.1487 -8.3767 41 1 4.7980 -3.5497 -9.7793 42 1 6.8896 1.1353 -7.4417 43 1 6.8736 0.0923 -5.9991 44 1 4.6194 1.9185 -6.9523 45 1 5.6333 2.1447 -5.5039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329406816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:28 Heat of formation + Delta-G solvation = -59.817381 kcal Electronic energy + Delta-G solvation = -26308.326564 eV Core-core repulsion = 22645.227825 eV Total energy + Delta-G solvation = -3663.098739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91002 -38.97996 -37.30861 -36.91162 -33.66246 -32.89610 -32.28374 -31.25203 -30.10340 -27.24821 -26.26670 -24.40809 -24.09671 -22.49779 -22.20059 -20.63782 -20.36801 -18.94004 -17.37090 -17.30250 -16.87481 -16.47429 -16.11222 -15.67698 -15.13456 -14.93393 -14.55670 -14.30373 -14.08116 -14.00360 -13.80935 -13.41026 -13.11519 -12.94528 -12.78946 -12.64935 -12.35966 -12.17514 -11.98093 -11.76053 -11.54318 -11.49481 -11.39536 -10.96512 -10.87952 -10.61480 -10.39150 -10.27904 -10.09954 -9.74871 -9.52822 -9.26274 -9.20565 -8.56467 -8.35184 -8.12829 -8.08966 -6.02598 -4.09172 1.39208 1.50417 1.89696 2.39725 3.27766 3.32882 3.35034 3.37959 3.65308 3.88068 4.36861 4.40454 4.40732 4.46017 4.50379 4.74467 4.87652 5.19021 5.23680 5.27112 5.27888 5.44009 5.45015 5.61275 5.64316 5.70590 5.80263 5.85794 6.01184 6.06543 6.20803 6.42887 6.58036 6.67356 6.76175 6.91322 7.01740 7.12813 7.26770 7.63816 7.74628 7.81987 7.92828 8.04784 8.18632 8.39972 8.94038 9.55758 11.02779 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.002831 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.579134 B = 9887.418340 C =10456.119061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 H 0.106 0.894 4 S -0.286 6.286 5 C -0.068 4.068 6 C -0.137 4.137 7 C 0.138 3.862 8 H 0.111 0.889 9 N -0.703 5.703 10 C 0.514 3.486 11 O -0.498 6.498 12 C 0.498 3.502 13 O -0.546 6.546 14 N -0.557 5.557 15 C 0.044 3.956 16 C -0.120 4.120 17 C 0.046 3.954 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 C 0.106 3.894 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.412 0.588 36 H 0.141 0.859 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.173 4.392 17.981 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 H 0.124 0.876 4 S -0.060 6.060 5 C -0.216 4.216 6 C -0.176 4.176 7 C 0.032 3.968 8 H 0.129 0.871 9 N -0.357 5.357 10 C 0.296 3.704 11 O -0.374 6.374 12 C 0.280 3.720 13 O -0.426 6.426 14 N -0.288 5.288 15 C -0.076 4.076 16 C -0.159 4.159 17 C 0.027 3.973 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.160 4.160 27 C -0.016 4.016 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.249 0.751 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.802 4.090 18.884 21.232 hybrid contribution 1.432 -0.266 -1.562 2.135 sum -7.371 3.824 17.322 19.210 Atomic orbital electron populations 1.21822 0.90976 1.03651 1.02937 1.23989 1.00191 1.01372 0.92104 0.87615 1.87936 1.40453 1.58570 1.19055 1.24410 0.97855 1.03070 0.96305 1.22807 1.00521 0.98066 0.96249 1.21797 0.93698 0.88936 0.92321 0.87124 1.46086 1.47640 1.34296 1.07686 1.20494 0.82413 0.84708 0.82768 1.90394 1.46891 1.32487 1.67635 1.19786 0.83009 0.85878 0.83342 1.90704 1.53111 1.28842 1.69895 1.48267 1.43130 1.28458 1.08926 1.23453 0.97771 0.86779 0.99606 1.21902 0.95937 0.99979 0.98058 1.18687 0.94615 0.91396 0.92599 1.21187 0.92738 1.12174 1.29043 0.92755 1.24966 0.95291 0.97423 0.96294 1.69846 1.15233 1.28786 1.38996 0.86620 0.82056 0.80627 0.78848 1.20746 1.21236 1.19992 1.22016 0.96391 0.98271 0.99364 1.21907 0.91737 0.93258 0.94676 0.90954 0.91391 0.90941 0.88917 0.87228 0.89003 0.89010 0.75139 0.84242 0.92196 0.87663 0.94649 0.95446 0.92956 0.91846 0.92918 0.91455 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.04 37.16 0.34 -0.56 16 2 C -0.05 -0.37 3.64 -26.36 -0.10 -0.46 16 3 H 0.11 0.78 7.58 -51.93 -0.39 0.38 16 4 S -0.29 -2.54 22.66 -107.50 -2.44 -4.98 16 5 C -0.07 -0.53 7.52 38.30 0.29 -0.24 16 6 C -0.14 -1.18 5.97 -25.62 -0.15 -1.33 16 7 C 0.14 1.24 2.67 -67.60 -0.18 1.06 16 8 H 0.11 1.07 7.00 -51.92 -0.36 0.71 16 9 N -0.70 -7.50 4.92 -53.91 -0.27 -7.77 16 10 C 0.51 7.36 7.58 -11.59 -0.09 7.27 16 11 O -0.50 -7.98 12.65 5.50 0.07 -7.91 16 12 C 0.50 8.35 7.76 -11.59 -0.09 8.26 16 13 O -0.55 -9.66 15.91 5.49 0.09 -9.57 16 14 N -0.56 -10.09 2.98 -173.54 -0.52 -10.61 16 15 C 0.04 0.84 6.20 -3.93 -0.02 0.82 16 16 C -0.12 -2.74 5.14 -26.84 -0.14 -2.88 16 17 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 18 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -24.65 11.30 55.43 0.63 -24.02 16 22 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 27 C 0.11 1.89 6.43 -3.71 -0.02 1.86 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.94 7.84 -51.93 -0.41 0.53 16 35 H 0.41 4.03 7.78 -40.82 -0.32 3.71 16 36 H 0.14 2.64 3.78 -56.98 -0.22 2.42 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 2.69 6.03 -51.93 -0.31 2.37 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.37 7.01 -51.93 -0.36 1.01 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -29.11 365.27 -9.83 -38.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.99 Total: 4.86 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.89 Total: -0.34 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.16 Total: -42.39 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.16 Total: -17.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.44 Total: -4.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.11 -9.83 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329406816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.880 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds