Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.48013 * 2 1 4 4 C 1.53994 * 109.48604 * 239.97662 * 2 1 3 5 5 C 1.45820 * 113.29493 * 158.99965 * 4 2 1 6 6 S 1.82225 * 112.64831 * 65.13180 * 5 4 2 7 7 C 1.79951 * 103.24146 * 286.05513 * 6 5 4 8 8 C 1.54167 * 111.28609 * 83.91455 * 7 6 5 9 9 N 1.44684 * 109.47740 * 120.01902 * 2 1 3 10 10 C 1.34771 * 119.72793 * 38.46568 * 9 2 1 11 11 O 1.21358 * 120.00037 * 8.20956 * 10 9 2 12 12 C 1.49444 * 120.00345 * 188.19835 * 10 9 2 13 13 O 1.21351 * 119.99778 * 6.87287 * 12 10 9 14 14 N 1.34772 * 120.00464 * 187.14449 * 12 10 9 15 15 C 1.46503 * 120.00493 * 184.76021 * 14 12 10 16 16 C 1.53000 * 109.47279 * 184.87938 * 15 14 12 17 17 C 1.50703 * 115.54774 * 305.95124 * 16 15 14 18 18 H 1.07998 * 119.99605 * 146.08740 * 17 16 15 19 19 C 1.37869 * 120.00061 * 326.07808 * 17 16 15 20 20 N 1.31509 * 120.00264 * 3.87622 * 19 17 16 21 21 Si 1.86806 * 119.99869 * 183.87240 * 19 17 16 22 22 H 1.48498 * 109.46898 * 90.00218 * 21 19 17 23 23 H 1.48498 * 109.47072 * 210.00244 * 21 19 17 24 24 H 1.48496 * 109.47004 * 330.00317 * 21 19 17 25 25 C 1.53002 * 117.49772 * 160.28121 * 16 15 14 26 26 C 1.52997 * 117.49969 * 91.62027 * 16 15 14 27 27 H 1.08997 * 109.46751 * 288.50180 * 1 2 3 28 28 H 1.09002 * 109.46861 * 48.49250 * 1 2 3 29 29 H 1.08995 * 109.46895 * 168.49880 * 1 2 3 30 30 H 1.09001 * 108.71986 * 279.99003 * 4 2 1 31 31 H 1.09004 * 108.71807 * 38.01700 * 4 2 1 32 32 H 1.09000 * 108.84948 * 185.94731 * 5 4 2 33 33 H 1.08999 * 108.84799 * 304.31846 * 5 4 2 34 34 H 1.09005 * 109.14012 * 204.41788 * 7 6 5 35 35 H 1.08993 * 109.14695 * 323.61611 * 7 6 5 36 36 H 1.09004 * 108.58946 * 195.79585 * 8 7 6 37 37 H 1.08999 * 108.40242 * 78.51865 * 8 7 6 38 38 H 0.97001 * 120.00025 * 4.76422 * 14 12 10 39 39 H 1.08997 * 109.46826 * 304.88105 * 15 14 12 40 40 H 1.09004 * 109.46896 * 64.87769 * 15 14 12 41 41 H 0.97006 * 120.00427 * 185.00159 * 20 19 17 42 42 H 1.09001 * 117.49847 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.49319 * 145.01795 * 25 16 15 44 44 H 1.08997 * 117.50382 * 214.97829 * 26 16 15 45 45 H 1.09003 * 117.50073 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0437 -0.7264 -1.2569 5 6 3.4148 -0.3741 -1.6067 6 16 4.6196 -0.9099 -0.3488 7 6 4.3566 0.2557 0.9967 8 6 3.1875 -0.1860 1.8993 9 7 2.0125 -0.6824 1.1811 10 6 1.3714 -1.7808 1.6270 11 8 0.4888 -2.2807 0.9607 12 6 1.7475 -2.3835 2.9418 13 8 2.5401 -1.8163 3.6646 14 7 1.2105 -3.5596 3.3223 15 6 1.4974 -4.0993 4.6537 16 6 0.8712 -5.4890 4.7866 17 6 -0.6025 -5.5695 4.4817 18 1 -1.0109 -6.4570 4.0212 19 6 -1.4293 -4.5105 4.7909 20 7 -0.9214 -3.4010 5.2812 21 14 -3.2712 -4.6516 4.5131 22 1 -3.9165 -5.1905 5.7372 23 1 -3.8301 -3.3099 4.2087 24 1 -3.5312 -5.5665 3.3728 25 6 1.4177 -6.4085 5.8806 26 6 1.7372 -6.6930 4.4108 27 1 -0.3633 0.3261 0.9745 28 1 -0.3633 0.6811 -0.7696 29 1 -0.3633 -1.0070 -0.2049 30 1 1.9916 -1.8016 -1.0855 31 1 1.3937 -0.4766 -2.0955 32 1 3.6671 -0.8427 -2.5579 33 1 3.4823 0.7078 -1.7205 34 1 5.2652 0.3214 1.5954 35 1 4.1314 1.2375 0.5803 36 1 2.8827 0.6619 2.5128 37 1 3.5435 -0.9744 2.5624 38 1 0.6341 -4.0488 2.7146 39 1 2.5762 -4.1723 4.7914 40 1 1.0783 -3.4379 5.4119 41 1 -1.5084 -2.6834 5.5665 42 1 2.2236 -6.0235 6.5053 43 1 0.7113 -7.0719 6.3795 44 1 1.2411 -7.5436 3.9435 45 1 2.7533 -6.4952 4.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330223033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = -22.287799 kcal Electronic energy + Delta-G solvation = -27149.230907 eV Core-core repulsion = 23487.759573 eV Total energy + Delta-G solvation = -3661.471335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65344 -38.42076 -36.76833 -36.67577 -34.16826 -32.99636 -32.19025 -31.38849 -29.57682 -26.66925 -25.57461 -24.40651 -23.53432 -23.09764 -21.33980 -20.97631 -19.42329 -18.78484 -17.38071 -16.60227 -16.56846 -16.11178 -15.78373 -15.32171 -14.90569 -14.81203 -14.58521 -14.42236 -14.00565 -13.97361 -13.71743 -13.20188 -13.04372 -12.69747 -12.63753 -12.27919 -11.98379 -11.90149 -11.71938 -11.64293 -11.45190 -11.25933 -11.09315 -11.01091 -10.75478 -10.52931 -10.29225 -10.15495 -9.85098 -9.69038 -9.06028 -8.92388 -8.62563 -8.59252 -8.29990 -7.97905 -7.75158 -6.05612 -4.23020 1.58812 2.04584 2.42201 2.84231 3.23837 3.32591 3.34672 3.80355 4.09212 4.30127 4.42038 4.64952 4.72387 4.87720 4.93110 4.98315 5.13574 5.23610 5.29871 5.33867 5.45715 5.57739 5.62719 5.67165 5.74591 5.90096 5.97258 6.11886 6.13283 6.26143 6.32534 6.48997 6.58249 6.65308 6.75914 6.84027 7.01574 7.22756 7.30278 7.42650 7.53968 7.88515 8.05823 8.26042 8.46255 8.78063 8.88850 9.40822 10.84900 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.004138 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.170398 B = 6764.567255 C = 7694.804132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 H 0.079 0.921 4 C -0.139 4.139 5 C -0.075 4.075 6 S -0.249 6.249 7 C -0.101 4.101 8 C 0.079 3.921 9 N -0.577 5.577 10 C 0.516 3.484 11 O -0.512 6.512 12 C 0.495 3.505 13 O -0.545 6.545 14 N -0.636 5.636 15 C 0.163 3.837 16 C 0.032 3.968 17 C -0.494 4.494 18 H 0.063 0.937 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.197 4.197 26 C -0.211 4.211 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.141 0.859 38 H 0.412 0.588 39 H 0.030 0.970 40 H 0.118 0.882 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 9.289 -10.674 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.039 3.961 3 H 0.097 0.903 4 C -0.179 4.179 5 C -0.222 4.222 6 S -0.022 6.022 7 C -0.250 4.250 8 C -0.046 4.046 9 N -0.311 5.311 10 C 0.300 3.700 11 O -0.386 6.386 12 C 0.275 3.725 13 O -0.428 6.428 14 N -0.282 5.282 15 C 0.041 3.959 16 C 0.031 3.969 17 C -0.532 4.532 18 H 0.081 0.919 19 C -0.129 4.129 20 N -0.510 5.510 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.235 4.235 26 C -0.248 4.248 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.248 0.752 39 H 0.048 0.952 40 H 0.136 0.864 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.392 8.775 -10.557 16.090 hybrid contribution -2.056 0.908 -0.257 2.262 sum 6.336 9.683 -10.814 15.838 Atomic orbital electron populations 1.22314 0.93356 1.05063 1.01953 1.20970 0.95742 0.95108 0.84313 0.90326 1.21074 0.95034 1.03528 0.98234 1.22176 0.96659 1.03754 0.99651 1.86750 1.50422 1.48978 1.16094 1.23900 1.02842 0.99746 0.98558 1.22704 0.84264 1.04037 0.93546 1.47283 1.28661 1.27510 1.27674 1.20486 0.82137 0.80402 0.86964 1.90654 1.30979 1.59798 1.57218 1.19731 0.82972 0.83003 0.86753 1.90453 1.35190 1.61951 1.55162 1.45561 1.45926 1.18756 1.17943 1.21274 0.95042 0.95655 0.83960 1.19231 0.93647 0.86687 0.97297 1.20549 0.90006 1.01504 1.41100 0.91912 1.24983 0.99006 0.94548 0.94401 1.69859 1.34461 1.05165 1.41471 0.86511 0.84975 0.77528 0.78640 1.20595 1.21155 1.19684 1.22954 1.02923 1.06788 0.90874 1.22972 0.99845 1.03280 0.98729 0.92442 0.92400 0.88510 0.89735 0.90123 0.87818 0.90426 0.86515 0.90329 0.91350 0.84158 0.75171 0.95208 0.86430 0.92686 0.91371 0.90122 0.90499 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.13 37.16 0.30 -1.90 16 2 C 0.14 1.73 2.39 -68.38 -0.16 1.57 16 3 H 0.08 0.80 7.52 -51.93 -0.39 0.41 16 4 C -0.14 -1.52 4.72 -29.61 -0.14 -1.66 16 5 C -0.07 -0.72 5.79 33.76 0.20 -0.52 16 6 S -0.25 -3.00 21.63 -107.50 -2.33 -5.33 16 7 C -0.10 -1.06 5.90 37.77 0.22 -0.84 16 8 C 0.08 1.06 5.33 -3.49 -0.02 1.04 16 9 N -0.58 -8.55 2.32 -166.71 -0.39 -8.93 16 10 C 0.52 9.52 7.03 -11.59 -0.08 9.44 16 11 O -0.51 -10.12 13.16 5.49 0.07 -10.05 16 12 C 0.50 10.25 7.67 -11.59 -0.09 10.16 16 13 O -0.55 -11.56 13.17 5.50 0.07 -11.49 16 14 N -0.64 -13.99 4.95 -60.73 -0.30 -14.29 16 15 C 0.16 3.76 4.61 -4.04 -0.02 3.74 16 16 C 0.03 0.75 2.09 -155.66 -0.33 0.42 16 17 C -0.49 -12.52 8.30 -34.44 -0.29 -12.81 16 18 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 19 C 0.07 1.90 5.28 -17.83 -0.09 1.80 16 20 N -0.87 -22.81 9.99 55.43 0.55 -22.26 16 21 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.20 -4.19 9.96 -26.69 -0.27 -4.45 16 26 C -0.21 -4.36 9.92 -26.69 -0.26 -4.62 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.49 5.81 -51.93 -0.30 1.19 16 30 H 0.08 1.17 7.43 -51.93 -0.39 0.79 16 31 H 0.08 0.74 7.93 -51.93 -0.41 0.32 16 32 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.08 0.61 8.11 -51.92 -0.42 0.19 16 34 H 0.12 1.09 8.14 -51.79 -0.42 0.66 16 35 H 0.08 0.68 7.90 -51.80 -0.41 0.27 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.14 2.27 4.62 -53.68 -0.25 2.02 16 38 H 0.41 9.34 7.44 -40.82 -0.30 9.03 16 39 H 0.03 0.66 8.05 -51.93 -0.42 0.25 16 40 H 0.12 3.04 5.95 -51.93 -0.31 2.73 16 41 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -26.99 363.39 -9.84 -36.83 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.95 Total: 13.29 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.03 Total: 1.37 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.13 Total: -45.49 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.14 Total: -21.54 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.33 Total: -5.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.99 -9.84 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.540 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds